Wall clock time and date at job start Mon Mar 30 2020 03:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31867 * 122.84742 * 2 1 4 4 C 1.28919 * 117.19615 * 180.02562 * 3 2 1 5 5 S 1.70958 * 110.31157 * 359.72808 * 4 3 2 6 6 C 1.34363 * 122.85143 * 180.02562 * 2 1 3 7 7 N 1.39798 * 126.06569 * 359.97438 * 6 2 1 8 8 C 1.34778 * 119.99661 * 180.02562 * 7 6 2 9 9 O 1.21300 * 119.99906 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99637 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47374 * 59.99792 * 10 8 7 12 12 C 1.53006 * 109.47239 * 299.99654 * 10 8 7 13 13 C 1.50699 * 109.46956 * 179.97438 * 10 8 7 14 14 H 1.08003 * 120.00271 * 359.97438 * 13 10 8 15 15 C 1.37879 * 120.00161 * 179.97438 * 13 10 8 16 16 N 1.31509 * 119.99895 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00268 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46680 * 60.00301 * 17 15 13 19 19 H 1.48492 * 109.47298 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46944 * 300.00817 * 17 15 13 21 21 H 1.09001 * 109.47508 * 269.97695 * 1 2 3 22 22 H 1.08999 * 109.47268 * 29.98150 * 1 2 3 23 23 H 1.09002 * 109.46945 * 149.97701 * 1 2 3 24 24 H 1.07996 * 124.85065 * 180.02562 * 4 3 2 25 25 H 0.96994 * 119.99866 * 0.02562 * 7 6 2 26 26 H 1.09001 * 109.47002 * 60.00070 * 12 10 8 27 27 H 1.08993 * 109.46955 * 180.02562 * 12 10 8 28 28 H 1.09000 * 109.47050 * 300.00336 * 12 10 8 29 29 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2222 1.1078 0.0000 4 6 3.5051 0.9809 -0.0005 5 16 3.9378 -0.6730 0.0065 6 6 2.2358 -1.1288 -0.0005 7 7 1.7330 -2.4332 -0.0006 8 6 2.5797 -3.4818 -0.0006 9 8 3.7780 -3.2936 -0.0010 10 6 2.0376 -4.8878 -0.0013 11 1 1.4278 -5.0418 -0.8915 12 6 1.1807 -5.1047 1.2477 13 6 3.1826 -5.8676 -0.0018 14 1 4.2011 -5.5081 -0.0020 15 6 2.9301 -7.2231 -0.0019 16 7 1.6901 -7.6609 -0.0021 17 14 4.3495 -8.4376 -0.0032 18 1 5.1815 -8.2278 1.2087 19 1 3.8154 -9.8231 -0.0038 20 1 5.1799 -8.2271 -1.2163 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 4.2065 1.8021 -0.0002 25 1 0.7747 -2.5835 -0.0006 26 1 0.3525 -4.3960 1.2476 27 1 0.7890 -6.1219 1.2474 28 1 1.7905 -4.9508 2.1379 29 1 1.5124 -8.6146 -0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597387027.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:42 Heat of formation + Delta-G solvation = -1.781304 kcal Electronic energy + Delta-G solvation = -14817.735193 eV Core-core repulsion = 12253.523373 eV Total energy + Delta-G solvation = -2564.211819 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.97375 -38.90525 -34.57923 -33.99287 -31.23207 -30.39865 -26.85461 -25.30145 -24.44600 -22.87386 -20.29406 -19.48106 -17.53195 -16.89194 -16.33647 -15.55620 -15.16526 -14.78327 -14.11733 -13.79566 -13.29336 -13.25048 -12.75405 -12.42034 -12.35330 -11.79514 -11.17237 -11.03178 -10.97060 -10.84066 -10.77230 -10.42397 -10.13603 -9.43506 -9.17212 -8.90987 -8.71299 -8.49772 -7.74542 -6.16736 -4.21546 1.04084 1.45042 2.16833 2.89437 3.29050 3.32193 3.35043 3.43980 3.49611 4.36563 4.52692 5.16859 5.19194 5.34530 5.61801 5.68809 5.82808 5.97516 6.28922 6.42764 6.60494 6.64556 6.71915 7.23965 7.51119 7.67356 7.89895 8.00669 8.11552 8.66827 8.86858 9.44739 10.90794 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043340 B = 0.006397 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.900916 B = 4376.225649 C = 4932.552402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.022 4.022 3 N -0.448 5.448 4 C -0.067 4.067 5 S 0.230 5.770 6 C 0.024 3.976 7 N -0.640 5.640 8 C 0.510 3.490 9 O -0.506 6.506 10 C 0.038 3.962 11 H 0.060 0.940 12 C -0.136 4.136 13 C -0.508 4.508 14 H 0.076 0.924 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.191 0.809 25 H 0.416 0.584 26 H 0.013 0.987 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.783 11.378 0.340 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.158 4.158 3 N -0.162 5.162 4 C -0.365 4.365 5 S 0.479 5.521 6 C -0.196 4.196 7 N -0.286 5.286 8 C 0.301 3.699 9 O -0.380 6.380 10 C 0.017 3.983 11 H 0.078 0.922 12 C -0.194 4.194 13 C -0.547 4.547 14 H 0.094 0.906 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.084 0.916 24 H 0.208 0.792 25 H 0.254 0.746 26 H 0.032 0.968 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.280 11.249 0.346 11.258 hybrid contribution -0.710 -0.635 0.002 0.953 sum -0.990 10.613 0.348 10.665 Atomic orbital electron populations 1.20150 0.87539 1.02685 1.02319 1.19968 0.97927 0.85463 1.12439 1.66090 1.05470 1.30688 1.13904 1.28342 0.95516 1.03036 1.09580 1.84990 1.01308 0.98070 1.67735 1.23700 0.98131 0.89923 1.07814 1.43714 1.11508 1.01263 1.72128 1.22730 0.86535 0.88015 0.72639 1.90497 1.15879 1.84457 1.47161 1.18906 0.97680 0.84333 0.97418 0.92236 1.21806 0.96806 1.03786 0.97014 1.21039 0.92717 0.89802 1.51107 0.90613 1.24939 0.96036 0.98332 0.94693 1.69842 1.18329 1.14709 1.50420 0.86448 0.82046 0.79420 0.78935 1.20079 1.21268 1.20072 0.91294 0.90800 0.91619 0.79220 0.74583 0.96755 0.88293 0.94647 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.07 36.00 0.36 -0.45 15 2 C -0.02 -0.35 6.77 -83.95 -0.57 -0.92 15 3 N -0.45 -7.10 10.53 -11.75 -0.12 -7.22 15 4 C -0.07 -0.94 12.21 51.54 0.63 -0.31 15 5 S 0.23 3.73 20.47 -107.50 -2.20 1.53 15 6 C 0.02 0.41 7.18 -15.28 -0.11 0.30 15 7 N -0.64 -11.13 5.29 -10.60 -0.06 -11.19 15 8 C 0.51 10.95 7.11 -10.99 -0.08 10.87 15 9 O -0.51 -12.04 13.09 5.54 0.07 -11.97 15 10 C 0.04 0.88 2.64 -92.92 -0.25 0.64 15 11 H 0.06 1.42 8.14 -51.93 -0.42 1.00 15 12 C -0.14 -2.93 8.87 37.16 0.33 -2.60 15 13 C -0.51 -13.66 8.38 -34.44 -0.29 -13.95 15 14 H 0.08 2.14 6.75 -52.48 -0.35 1.78 15 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 16 N -0.89 -24.02 11.32 55.43 0.63 -23.39 15 17 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 15 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 21 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.06 0.70 7.21 -51.93 -0.37 0.32 15 24 H 0.19 1.96 8.06 -52.49 -0.42 1.54 15 25 H 0.42 6.04 7.04 -40.82 -0.29 5.75 15 26 H 0.01 0.24 7.56 -51.93 -0.39 -0.15 15 27 H 0.10 2.36 6.07 -51.93 -0.32 2.04 15 28 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 LS Contribution 263.65 15.07 3.97 3.97 Total: -1.00 -29.70 263.65 -5.76 -35.47 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.97 Total: 1.66 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -0.06 Total: -4.88 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.45 Total: -41.80 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.20 Total: 1.53 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.70 -5.76 -35.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597387027.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.685 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds