Wall clock time and date at job start Mon Mar 30 2020 03:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31867 * 122.84742 * 2 1 4 4 C 1.28919 * 117.19615 * 180.02562 * 3 2 1 5 5 S 1.70958 * 110.31157 * 359.72808 * 4 3 2 6 6 C 1.34363 * 122.85143 * 180.02562 * 2 1 3 7 7 N 1.39798 * 126.06569 * 359.97438 * 6 2 1 8 8 C 1.34778 * 119.99661 * 180.02562 * 7 6 2 9 9 O 1.21300 * 119.99906 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99637 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47374 * 59.99792 * 10 8 7 12 12 C 1.53006 * 109.47239 * 299.99654 * 10 8 7 13 13 C 1.50699 * 109.46956 * 179.97438 * 10 8 7 14 14 H 1.08003 * 120.00271 * 359.97438 * 13 10 8 15 15 C 1.37879 * 120.00161 * 179.97438 * 13 10 8 16 16 N 1.31509 * 119.99895 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00268 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46680 * 60.00301 * 17 15 13 19 19 H 1.48492 * 109.47298 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46944 * 300.00817 * 17 15 13 21 21 H 1.09001 * 109.47508 * 269.97695 * 1 2 3 22 22 H 1.08999 * 109.47268 * 29.98150 * 1 2 3 23 23 H 1.09002 * 109.46945 * 149.97701 * 1 2 3 24 24 H 1.07996 * 124.85065 * 180.02562 * 4 3 2 25 25 H 0.96994 * 119.99866 * 0.02562 * 7 6 2 26 26 H 1.09001 * 109.47002 * 60.00070 * 12 10 8 27 27 H 1.08993 * 109.46955 * 180.02562 * 12 10 8 28 28 H 1.09000 * 109.47050 * 300.00336 * 12 10 8 29 29 H 0.97006 * 120.00358 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2222 1.1078 0.0000 4 6 3.5051 0.9809 -0.0005 5 16 3.9378 -0.6730 0.0065 6 6 2.2358 -1.1288 -0.0005 7 7 1.7330 -2.4332 -0.0006 8 6 2.5797 -3.4818 -0.0006 9 8 3.7780 -3.2936 -0.0010 10 6 2.0376 -4.8878 -0.0013 11 1 1.4278 -5.0418 -0.8915 12 6 1.1807 -5.1047 1.2477 13 6 3.1826 -5.8676 -0.0018 14 1 4.2011 -5.5081 -0.0020 15 6 2.9301 -7.2231 -0.0019 16 7 1.6901 -7.6609 -0.0021 17 14 4.3495 -8.4376 -0.0032 18 1 5.1815 -8.2278 1.2087 19 1 3.8154 -9.8231 -0.0038 20 1 5.1799 -8.2271 -1.2163 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3633 -0.8898 -0.5142 24 1 4.2065 1.8021 -0.0002 25 1 0.7747 -2.5835 -0.0006 26 1 0.3525 -4.3960 1.2476 27 1 0.7890 -6.1219 1.2474 28 1 1.7905 -4.9508 2.1379 29 1 1.5124 -8.6146 -0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597387027.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:34 Heat of formation + Delta-G solvation = -21.695854 kcal Electronic energy + Delta-G solvation = -14818.598752 eV Core-core repulsion = 12253.523373 eV Total energy + Delta-G solvation = -2565.075379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.38065 -40.32548 -36.05258 -35.89139 -32.82804 -31.83759 -28.10603 -27.23282 -25.65871 -24.54325 -21.85585 -20.82499 -18.91206 -18.45577 -18.01724 -17.14745 -16.61933 -16.55227 -15.58263 -15.25271 -14.75320 -14.55308 -14.40320 -13.63410 -13.40464 -13.27512 -13.01733 -12.78564 -12.65662 -12.38875 -12.21148 -12.15248 -12.06256 -11.11579 -10.91812 -10.53724 -10.32669 -9.97105 -9.03272 -8.18406 -6.29134 -0.21002 0.23077 0.95781 1.42844 1.43067 1.51525 1.51633 1.99611 2.04264 2.44605 3.12460 3.45254 4.02556 4.16161 4.33311 4.65733 4.70081 4.78518 4.85861 4.94094 4.96124 5.13728 5.40474 5.42415 5.70288 5.84606 6.10060 6.35818 6.78104 6.79298 7.08226 7.39736 8.87288 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.043340 B = 0.006397 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.900916 B = 4376.225649 C = 4932.552402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.007 4.007 3 N -0.469 5.469 4 C -0.033 4.033 5 S 0.192 5.808 6 C -0.013 4.013 7 N -0.624 5.624 8 C 0.513 3.487 9 O -0.539 6.539 10 C 0.034 3.966 11 H 0.052 0.948 12 C -0.124 4.124 13 C -0.532 4.532 14 H 0.054 0.946 15 C 0.024 3.976 16 N -0.909 5.909 17 Si 0.955 3.045 18 H -0.276 1.276 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.230 0.770 25 H 0.429 0.571 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.025 0.975 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.435 12.711 0.465 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.142 4.142 3 N -0.183 5.183 4 C -0.331 4.331 5 S 0.442 5.558 6 C -0.232 4.232 7 N -0.271 5.271 8 C 0.303 3.697 9 O -0.416 6.416 10 C 0.013 3.987 11 H 0.069 0.931 12 C -0.182 4.182 13 C -0.570 4.570 14 H 0.072 0.928 15 C -0.176 4.176 16 N -0.547 5.547 17 Si 0.781 3.219 18 H -0.202 1.202 19 H -0.201 1.201 20 H -0.202 1.202 21 H 0.102 0.898 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.246 0.754 25 H 0.269 0.731 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.044 0.956 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.973 12.605 0.471 12.651 hybrid contribution -0.518 -0.870 -0.050 1.014 sum -1.491 11.735 0.421 11.837 Atomic orbital electron populations 1.20331 0.85124 1.03955 1.03629 1.20534 0.99513 0.84784 1.09381 1.66231 1.06053 1.30571 1.15453 1.28978 0.95594 1.02606 1.05877 1.85145 1.02290 1.00118 1.68259 1.23765 0.98300 0.89787 1.11304 1.43176 1.11563 1.00856 1.71535 1.22188 0.86352 0.88235 0.72887 1.90486 1.17069 1.85076 1.48936 1.18797 0.96778 0.85303 0.97816 0.93051 1.21627 0.97500 1.03506 0.95609 1.21213 0.92898 0.91135 1.51772 0.92810 1.25548 0.98104 0.99560 0.94420 1.69920 1.19309 1.15036 1.50483 0.85652 0.79633 0.78003 0.78613 1.20155 1.20137 1.20165 0.89838 0.89758 0.90182 0.75353 0.73054 0.92719 0.90550 0.95594 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.07 71.23 0.72 -0.78 15 2 C -0.01 -0.19 6.77 41.67 0.28 0.09 15 3 N -0.47 -13.57 10.53 -191.08 -2.01 -15.59 15 4 C -0.03 -0.83 12.21 130.67 1.60 0.77 15 5 S 0.19 6.08 20.47 -56.49 -1.16 4.92 15 6 C -0.01 -0.44 7.18 82.53 0.59 0.16 15 7 N -0.62 -21.10 5.29 -305.84 -1.62 -22.72 15 8 C 0.51 22.16 7.11 87.66 0.62 22.78 15 9 O -0.54 -26.21 13.09 -3.09 -0.04 -26.26 15 10 C 0.03 1.61 2.64 -12.29 -0.03 1.58 15 11 H 0.05 2.49 8.14 -2.39 -0.02 2.47 15 12 C -0.12 -5.30 8.87 71.98 0.64 -4.66 15 13 C -0.53 -29.18 8.38 25.60 0.21 -28.96 15 14 H 0.05 3.13 6.75 -2.91 -0.02 3.11 15 15 C 0.02 1.26 5.30 84.66 0.45 1.71 15 16 N -0.91 -48.91 11.32 21.45 0.24 -48.66 15 17 Si 0.96 43.34 29.54 68.60 2.03 45.36 15 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 19 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 21 H 0.08 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 23 H 0.08 1.45 7.21 -2.39 -0.02 1.43 15 24 H 0.23 3.83 8.06 -2.91 -0.02 3.80 15 25 H 0.43 11.68 7.04 -92.71 -0.65 11.02 15 26 H 0.05 1.83 7.56 -2.39 -0.02 1.81 15 27 H 0.08 3.63 6.07 -2.39 -0.01 3.61 15 28 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15 29 H 0.27 13.65 8.31 -92.70 -0.77 12.88 15 Total: -1.00 -63.74 263.65 3.05 -60.69 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.53 Total: 9.57 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.08 Total: -7.32 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -3.39 Total: -86.97 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.04 Total: -26.26 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.16 Total: 4.92 kcal Total: -63.74 3.05 -60.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597387027.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.998 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds