Wall clock time and date at job start Mon Mar 30 2020 03:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.28925 * 124.84317 * 2 1 4 4 C 1.31856 * 117.19255 * 179.97438 * 3 2 1 5 5 C 1.34360 * 114.30306 * 0.02562 * 4 3 2 6 6 N 1.39802 * 126.06898 * 180.02562 * 5 4 3 7 7 C 1.34772 * 119.99970 * 179.97438 * 6 5 4 8 8 O 1.21309 * 120.00070 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99903 * 180.02562 * 7 6 5 10 10 H 1.08994 * 109.47361 * 60.00077 * 9 7 6 11 11 C 1.53006 * 109.47149 * 299.99703 * 9 7 6 12 12 C 1.50703 * 109.47444 * 179.97438 * 9 7 6 13 13 H 1.08001 * 119.99661 * 35.10155 * 12 9 7 14 14 C 1.37868 * 120.00446 * 215.10473 * 12 9 7 15 15 N 1.31514 * 120.00218 * 184.90897 * 14 12 9 16 16 Si 1.86802 * 120.00093 * 4.90794 * 14 12 9 17 17 H 1.48496 * 109.47292 * 84.82010 * 16 14 12 18 18 H 1.48494 * 109.47356 * 204.82457 * 16 14 12 19 19 H 1.48500 * 109.46883 * 324.82243 * 16 14 12 20 20 S 1.70954 * 124.84263 * 180.31693 * 2 1 3 21 21 H 1.09001 * 109.46982 * 89.97322 * 1 2 3 22 22 H 1.08994 * 109.46768 * 209.97558 * 1 2 3 23 23 H 1.09002 * 109.46911 * 329.96966 * 1 2 3 24 24 H 1.07995 * 122.84918 * 180.02562 * 4 3 2 25 25 H 0.96994 * 119.99672 * 359.97438 * 6 5 4 26 26 H 1.08997 * 109.46618 * 55.07290 * 11 9 7 27 27 H 1.08997 * 109.46976 * 295.07295 * 11 9 7 28 28 H 1.08994 * 109.47083 * 175.07416 * 11 9 7 29 29 H 0.97002 * 120.00048 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2437 1.0581 0.0000 4 6 3.5505 0.8826 0.0005 5 6 3.9355 -0.4047 0.0004 6 7 5.2540 -0.8694 0.0014 7 6 5.5016 -2.1942 0.0017 8 8 4.5803 -2.9834 0.0016 9 6 6.9228 -2.6952 0.0034 10 1 7.4353 -2.3314 0.8939 11 6 7.6450 -2.1845 -1.2451 12 6 6.9244 -4.2022 0.0041 13 1 6.1602 -4.7432 -0.5343 14 6 7.9011 -4.8903 0.6919 15 7 7.9603 -6.2018 0.6140 16 14 9.1407 -3.9599 1.7346 17 1 8.5655 -3.7078 3.0803 18 1 10.3796 -4.7673 1.8692 19 1 9.4623 -2.6647 1.0833 20 16 2.4838 -1.4030 -0.0078 21 1 -0.3633 0.0005 -1.0277 22 1 -0.3632 -0.8902 0.5134 23 1 -0.3633 0.8897 0.5143 24 1 4.2519 1.7038 0.0010 25 1 5.9906 -0.2384 0.0019 26 1 7.5682 -1.0982 -1.2904 27 1 7.1861 -2.6187 -2.1334 28 1 8.6952 -2.4730 -1.2009 29 1 8.6473 -6.6860 1.0983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597431488.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:44 Heat of formation + Delta-G solvation = -0.232548 kcal Electronic energy + Delta-G solvation = -14659.978606 eV Core-core repulsion = 12095.833946 eV Total energy + Delta-G solvation = -2564.144660 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88042 -38.95126 -34.66202 -33.93639 -31.71129 -31.02966 -27.27875 -25.43366 -23.86067 -22.83347 -20.31133 -19.70137 -17.62484 -17.11556 -16.73802 -15.65317 -15.14311 -14.65125 -14.25775 -14.06578 -13.52973 -13.15566 -12.80038 -12.55865 -12.39969 -12.31555 -11.71372 -11.28377 -11.16216 -10.88740 -10.75424 -10.46774 -9.96888 -9.48930 -9.35872 -8.95795 -8.79057 -8.70518 -7.79787 -6.20748 -4.22509 0.99299 1.39152 2.11782 2.86757 3.14025 3.19981 3.24960 3.36054 3.40022 4.25309 4.46112 5.07030 5.20522 5.36979 5.49062 5.52525 5.62924 5.85516 5.94903 6.15987 6.18988 6.31300 6.58265 6.64532 6.98598 7.29931 7.63118 7.99558 8.33620 8.59042 8.93279 9.36740 10.91903 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.046711 B = 0.006188 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.291710 B = 4523.850381 C = 4800.918672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.042 4.042 3 N -0.455 5.455 4 C -0.041 4.041 5 C 0.017 3.983 6 N -0.644 5.644 7 C 0.508 3.492 8 O -0.491 6.491 9 C 0.004 3.996 10 H 0.061 0.939 11 C -0.137 4.137 12 C -0.503 4.503 13 H 0.088 0.912 14 C 0.075 3.925 15 N -0.888 5.888 16 Si 0.870 3.130 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.264 1.264 20 S 0.239 5.761 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.169 0.831 25 H 0.415 0.585 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 12.637 -0.858 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.320 4.320 3 N -0.170 5.170 4 C -0.196 4.196 5 C -0.202 4.202 6 N -0.291 5.291 7 C 0.298 3.702 8 O -0.363 6.363 9 C -0.018 4.018 10 H 0.079 0.921 11 C -0.195 4.195 12 C -0.541 4.541 13 H 0.106 0.894 14 C -0.128 4.128 15 N -0.525 5.525 16 Si 0.697 3.303 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.189 1.189 20 S 0.488 5.512 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.186 0.814 25 H 0.253 0.747 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.222 11.249 -0.805 13.957 hybrid contribution 1.906 1.555 0.654 2.545 sum -6.316 12.804 -0.152 14.278 Atomic orbital electron populations 1.20244 0.85909 1.03406 1.03103 1.27186 1.02039 0.94123 1.08625 1.66163 1.03865 1.32254 1.14677 1.21377 0.91787 0.93886 1.12519 1.23985 0.92004 0.96495 1.07736 1.43739 1.03373 1.09405 1.72594 1.22576 0.94920 0.79307 0.73445 1.90548 1.46031 1.53720 1.45985 1.19345 0.86415 0.99330 0.96660 0.92115 1.22007 1.01374 0.97044 0.99088 1.20684 1.13765 0.86533 1.33084 0.89355 1.25015 0.97037 0.94814 0.95893 1.69867 1.34272 1.06466 1.41861 0.86980 0.81473 0.80363 0.81515 1.19949 1.20969 1.18853 1.85061 0.92454 1.05714 1.67960 0.90414 0.90625 0.90137 0.81409 0.74741 0.95390 0.92576 0.92091 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.46 36.01 0.38 -0.31 15 2 C -0.04 -0.61 7.38 -13.49 -0.10 -0.71 15 3 N -0.45 -7.14 10.54 -11.70 -0.12 -7.27 15 4 C -0.04 -0.62 11.39 -18.91 -0.22 -0.83 15 5 C 0.02 0.29 7.26 -15.28 -0.11 0.18 15 6 N -0.64 -10.58 5.30 -10.60 -0.06 -10.63 15 7 C 0.51 10.56 7.11 -10.99 -0.08 10.48 15 8 O -0.49 -11.75 13.40 5.53 0.07 -11.67 15 9 C 0.00 0.10 2.30 -92.92 -0.21 -0.12 15 10 H 0.06 1.27 5.29 -51.93 -0.27 0.99 15 11 C -0.14 -2.53 9.12 37.16 0.34 -2.19 15 12 C -0.50 -13.68 8.36 -34.44 -0.29 -13.97 15 13 H 0.09 2.73 7.61 -52.49 -0.40 2.33 15 14 C 0.08 2.08 5.47 -17.82 -0.10 1.99 15 15 N -0.89 -26.34 13.96 55.43 0.77 -25.57 15 16 Si 0.87 19.92 26.99 -169.99 -4.59 15.33 15 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 19 H -0.26 -5.50 6.82 56.52 0.39 -5.11 15 20 S 0.24 3.91 20.42 -107.50 -2.20 1.72 15 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.17 2.02 8.06 -52.49 -0.42 1.60 15 25 H 0.42 5.32 8.18 -40.82 -0.33 4.98 15 26 H 0.03 0.40 7.43 -51.93 -0.39 0.02 15 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 29 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -31.90 266.07 -5.57 -37.47 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -3.08 Total: 2.09 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.39 Total: -5.48 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.59 Total: -43.47 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.59 Total: 15.33 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -2.20 Total: 1.72 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.90 -5.57 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597431488.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.240 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds