Wall clock time and date at job start Mon Mar 30 2020 03:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.28925 * 124.84317 * 2 1 4 4 C 1.31856 * 117.19255 * 179.97438 * 3 2 1 5 5 C 1.34360 * 114.30306 * 0.02562 * 4 3 2 6 6 N 1.39802 * 126.06898 * 180.02562 * 5 4 3 7 7 C 1.34772 * 119.99970 * 179.97438 * 6 5 4 8 8 O 1.21309 * 120.00070 * 359.97438 * 7 6 5 9 9 C 1.50695 * 119.99903 * 180.02562 * 7 6 5 10 10 H 1.08994 * 109.47361 * 60.00077 * 9 7 6 11 11 C 1.53006 * 109.47149 * 299.99703 * 9 7 6 12 12 C 1.50703 * 109.47444 * 179.97438 * 9 7 6 13 13 H 1.08001 * 119.99661 * 35.10155 * 12 9 7 14 14 C 1.37868 * 120.00446 * 215.10473 * 12 9 7 15 15 N 1.31514 * 120.00218 * 184.90897 * 14 12 9 16 16 Si 1.86802 * 120.00093 * 4.90794 * 14 12 9 17 17 H 1.48496 * 109.47292 * 84.82010 * 16 14 12 18 18 H 1.48494 * 109.47356 * 204.82457 * 16 14 12 19 19 H 1.48500 * 109.46883 * 324.82243 * 16 14 12 20 20 S 1.70954 * 124.84263 * 180.31693 * 2 1 3 21 21 H 1.09001 * 109.46982 * 89.97322 * 1 2 3 22 22 H 1.08994 * 109.46768 * 209.97558 * 1 2 3 23 23 H 1.09002 * 109.46911 * 329.96966 * 1 2 3 24 24 H 1.07995 * 122.84918 * 180.02562 * 4 3 2 25 25 H 0.96994 * 119.99672 * 359.97438 * 6 5 4 26 26 H 1.08997 * 109.46618 * 55.07290 * 11 9 7 27 27 H 1.08997 * 109.46976 * 295.07295 * 11 9 7 28 28 H 1.08994 * 109.47083 * 175.07416 * 11 9 7 29 29 H 0.97002 * 120.00048 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2437 1.0581 0.0000 4 6 3.5505 0.8826 0.0005 5 6 3.9355 -0.4047 0.0004 6 7 5.2540 -0.8694 0.0014 7 6 5.5016 -2.1942 0.0017 8 8 4.5803 -2.9834 0.0016 9 6 6.9228 -2.6952 0.0034 10 1 7.4353 -2.3314 0.8939 11 6 7.6450 -2.1845 -1.2451 12 6 6.9244 -4.2022 0.0041 13 1 6.1602 -4.7432 -0.5343 14 6 7.9011 -4.8903 0.6919 15 7 7.9603 -6.2018 0.6140 16 14 9.1407 -3.9599 1.7346 17 1 8.5655 -3.7078 3.0803 18 1 10.3796 -4.7673 1.8692 19 1 9.4623 -2.6647 1.0833 20 16 2.4838 -1.4030 -0.0078 21 1 -0.3633 0.0005 -1.0277 22 1 -0.3632 -0.8902 0.5134 23 1 -0.3633 0.8897 0.5143 24 1 4.2519 1.7038 0.0010 25 1 5.9906 -0.2384 0.0019 26 1 7.5682 -1.0982 -1.2904 27 1 7.1861 -2.6187 -2.1334 28 1 8.6952 -2.4730 -1.2009 29 1 8.6473 -6.6860 1.0983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597431488.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:44 Heat of formation + Delta-G solvation = -23.950638 kcal Electronic energy + Delta-G solvation = -14661.007099 eV Core-core repulsion = 12095.833946 eV Total energy + Delta-G solvation = -2565.173154 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.30788 -40.28987 -36.10062 -35.78037 -33.48582 -32.23384 -28.51036 -27.27338 -25.12306 -24.36182 -21.76774 -21.06904 -19.28163 -18.75857 -18.07607 -17.17555 -16.54706 -16.38794 -15.66152 -15.34941 -15.06462 -14.50188 -14.26990 -14.16352 -13.58092 -13.27959 -13.12062 -12.99977 -12.63887 -12.39154 -12.28828 -12.01475 -11.78401 -11.32123 -10.94293 -10.75923 -10.34467 -10.06600 -9.04572 -8.30386 -6.38760 -0.23941 0.18889 0.91454 1.35315 1.37895 1.46414 1.51641 1.98267 2.02422 2.33080 3.05617 3.41619 4.00948 4.15225 4.30722 4.32946 4.64686 4.68806 4.73702 4.76429 4.90216 5.06938 5.13419 5.38874 5.42364 5.52999 6.12442 6.36724 6.72834 6.79652 7.06882 7.25692 8.86991 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.046711 B = 0.006188 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.291710 B = 4523.850381 C = 4800.918672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.015 4.015 3 N -0.475 5.475 4 C -0.019 4.019 5 C -0.011 4.011 6 N -0.624 5.624 7 C 0.508 3.492 8 O -0.537 6.537 9 C 0.002 3.998 10 H 0.080 0.920 11 C -0.132 4.132 12 C -0.511 4.511 13 H 0.027 0.973 14 C 0.010 3.990 15 N -0.948 5.948 16 Si 0.942 3.058 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.219 1.219 20 S 0.182 5.818 21 H 0.096 0.904 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.202 0.798 25 H 0.434 0.566 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 16.406 -0.343 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.293 4.293 3 N -0.190 5.190 4 C -0.173 4.173 5 C -0.230 4.230 6 N -0.272 5.272 7 C 0.297 3.703 8 O -0.412 6.412 9 C -0.020 4.020 10 H 0.098 0.902 11 C -0.189 4.189 12 C -0.549 4.549 13 H 0.046 0.954 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.764 3.236 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.141 1.141 20 S 0.432 5.568 21 H 0.114 0.886 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.218 0.782 25 H 0.276 0.724 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.770 15.094 -0.311 16.979 hybrid contribution 1.542 0.435 0.430 1.659 sum -6.228 15.529 0.119 16.732 Atomic orbital electron populations 1.20493 0.82967 1.04863 1.04731 1.27843 1.03530 0.92485 1.05417 1.66303 1.04284 1.32292 1.16151 1.21885 0.92079 0.93996 1.09307 1.23970 0.91386 0.96749 1.10855 1.43159 1.04275 1.08063 1.71742 1.22208 0.94028 0.80575 0.73441 1.90551 1.47008 1.55418 1.48261 1.19302 0.87864 0.95703 0.99089 0.90212 1.21897 1.00609 1.00070 0.96370 1.20825 1.12066 0.89846 1.32198 0.95438 1.26049 0.99680 0.95658 0.97365 1.70059 1.35886 1.08936 1.43783 0.85825 0.77832 0.80565 0.79361 1.19524 1.21176 1.14128 1.85326 0.94386 1.08179 1.68872 0.88563 0.89075 0.88708 0.78171 0.72446 0.90384 0.94163 0.91815 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.46 71.24 0.75 -0.51 15 2 C -0.01 -0.40 7.38 88.54 0.65 0.26 15 3 N -0.48 -13.55 10.54 -190.94 -2.01 -15.56 15 4 C -0.02 -0.50 11.39 83.80 0.95 0.46 15 5 C -0.01 -0.35 7.26 82.53 0.60 0.24 15 6 N -0.62 -19.12 5.30 -305.84 -1.62 -20.74 15 7 C 0.51 20.96 7.11 87.66 0.62 21.58 15 8 O -0.54 -26.70 13.40 -3.12 -0.04 -26.74 15 9 C 0.00 0.09 2.30 -12.28 -0.03 0.06 15 10 H 0.08 3.07 5.29 -2.39 -0.01 3.06 15 11 C -0.13 -4.52 9.12 71.98 0.66 -3.87 15 12 C -0.51 -28.86 8.36 25.60 0.21 -28.65 15 13 H 0.03 1.83 7.61 -2.91 -0.02 1.81 15 14 C 0.01 0.56 5.47 84.65 0.46 1.02 15 15 N -0.95 -58.85 13.96 21.44 0.30 -58.55 15 16 Si 0.94 40.33 26.99 68.60 1.85 42.18 15 17 H -0.27 -11.34 7.11 99.48 0.71 -10.64 15 18 H -0.29 -12.26 7.11 99.48 0.71 -11.56 15 19 H -0.22 -7.76 6.82 99.48 0.68 -7.08 15 20 S 0.18 5.93 20.42 -56.49 -1.15 4.77 15 21 H 0.10 1.43 8.14 -2.39 -0.02 1.41 15 22 H 0.09 1.37 8.14 -2.39 -0.02 1.35 15 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 24 H 0.20 3.88 8.06 -2.91 -0.02 3.86 15 25 H 0.43 9.41 8.18 -92.71 -0.76 8.65 15 26 H 0.08 1.90 7.43 -2.39 -0.02 1.88 15 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 15 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 29 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 Total: -1.00 -74.13 266.07 2.59 -71.54 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.39 Total: 12.51 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.88 Total: -9.40 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -3.33 Total: -94.85 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.04 Total: -26.74 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 1.85 Total: 42.18 kcal Atomic # 16 Polarization: 5.93 SS G_CDS: -1.15 Total: 4.77 kcal Total: -74.13 2.59 -71.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597431488.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.585 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds