Wall clock time and date at job start Mon Mar 30 2020 03:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29065 * 124.85648 * 2 1 4 4 C 1.32040 * 117.10197 * 179.97438 * 3 2 1 5 5 N 1.40466 * 122.83206 * 179.97438 * 4 3 2 6 6 C 1.34773 * 120.00242 * 5.33691 * 5 4 3 7 7 O 1.21310 * 119.99820 * 354.93235 * 6 5 4 8 8 C 1.50697 * 120.00328 * 174.93506 * 6 5 4 9 9 H 1.09008 * 109.47259 * 60.00265 * 8 6 5 10 10 C 1.52994 * 109.47109 * 299.99949 * 8 6 5 11 11 C 1.50702 * 109.47142 * 179.97438 * 8 6 5 12 12 H 1.07997 * 119.99991 * 0.02562 * 11 8 6 13 13 C 1.37883 * 120.00114 * 179.97438 * 11 8 6 14 14 N 1.31510 * 119.99700 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 120.00273 * 180.02562 * 13 11 8 16 16 H 1.48509 * 109.46836 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47262 * 119.99826 * 15 13 11 18 18 H 1.48498 * 109.47216 * 240.00173 * 15 13 11 19 19 C 1.34163 * 114.34043 * 0.23290 * 4 3 2 20 20 S 1.70952 * 124.85234 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.47000 * 90.00448 * 1 2 3 22 22 H 1.09004 * 109.47062 * 210.00001 * 1 2 3 23 23 H 1.08998 * 109.46897 * 330.00387 * 1 2 3 24 24 H 0.97005 * 119.99832 * 185.34505 * 5 4 3 25 25 H 1.09003 * 109.47348 * 179.97438 * 10 8 6 26 26 H 1.09001 * 109.47042 * 60.00301 * 10 8 6 27 27 H 1.08997 * 109.47251 * 299.99821 * 10 8 6 28 28 H 0.97001 * 120.00107 * 180.02562 * 14 13 11 29 29 H 1.07994 * 126.04599 * 179.73569 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2447 1.0591 0.0000 4 6 3.5530 0.8809 0.0005 5 7 4.4669 1.9477 0.0001 6 6 4.0228 3.2156 0.1076 7 8 2.8311 3.4425 0.1122 8 6 5.0065 4.3514 0.2221 9 1 5.6445 4.3700 -0.6616 10 6 5.8694 4.1550 1.4701 11 6 4.2582 5.6552 0.3282 12 1 3.1784 5.6607 0.3146 13 6 4.9523 6.8410 0.4437 14 7 6.2673 6.8342 0.4608 15 14 4.0249 8.4571 0.5760 16 1 2.5638 8.1942 0.5334 17 1 4.3704 9.1226 1.8577 18 1 4.4029 9.3390 -0.5574 19 6 3.9360 -0.4049 -0.0040 20 16 2.4840 -1.4029 0.0006 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 5.4177 1.7717 -0.0778 25 1 6.5812 4.9763 1.5527 26 1 6.4106 3.2120 1.3929 27 1 5.2314 4.1365 2.3537 28 1 6.7556 7.6684 0.5425 29 1 4.9542 -0.7646 -0.0084 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597432916.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:50 Heat of formation + Delta-G solvation = 12.872374 kcal Electronic energy + Delta-G solvation = -14739.691989 eV Core-core repulsion = 12176.115601 eV Total energy + Delta-G solvation = -2563.576388 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 4.22 seconds Orbital eigenvalues (eV) -40.20274 -38.12607 -34.13142 -33.76075 -31.36242 -30.17404 -28.00940 -25.16782 -23.90822 -22.40460 -20.01842 -19.74454 -17.46412 -16.61775 -16.08610 -15.15518 -15.09469 -14.61133 -14.29829 -13.94774 -13.29872 -13.01026 -12.77518 -12.37682 -12.14237 -11.74094 -11.59836 -11.04150 -10.76528 -10.68990 -10.35573 -10.00427 -9.97288 -9.43324 -9.24841 -9.00160 -8.56582 -8.32597 -7.76087 -6.05836 -4.08984 0.86687 1.50452 1.83367 2.95413 3.31975 3.39311 3.46592 3.55490 3.90452 4.39904 4.51850 5.15894 5.27941 5.37423 5.43696 5.49513 5.72806 5.95581 6.15454 6.56716 6.77570 6.84860 7.00867 7.40360 7.58800 7.76282 7.99044 8.15954 8.41959 9.00567 9.14861 9.56823 11.01987 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.045472 B = 0.005760 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.615404 B = 4859.716505 C = 5386.188128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.069 3.931 3 N -0.449 5.449 4 C 0.330 3.670 5 N -0.663 5.663 6 C 0.509 3.491 7 O -0.484 6.484 8 C 0.033 3.967 9 H 0.055 0.945 10 C -0.134 4.134 11 C -0.501 4.501 12 H 0.076 0.924 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.901 3.099 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.334 4.334 20 S 0.098 5.902 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.414 0.586 25 H 0.096 0.904 26 H 0.012 0.988 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -15.922 -0.661 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.211 4.211 3 N -0.166 5.166 4 C 0.105 3.895 5 N -0.312 5.312 6 C 0.297 3.703 7 O -0.353 6.353 8 C 0.012 3.988 9 H 0.073 0.927 10 C -0.192 4.192 11 C -0.539 4.539 12 H 0.094 0.906 13 C -0.142 4.142 14 N -0.536 5.536 15 Si 0.729 3.271 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.477 4.477 20 S 0.348 5.652 21 H 0.104 0.896 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.251 0.749 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.435 -16.006 -0.621 16.915 hybrid contribution 0.944 1.427 0.031 1.712 sum -4.491 -14.578 -0.590 15.266 Atomic orbital electron populations 1.20460 0.85161 1.04189 1.03891 1.27047 1.01787 0.90245 1.02031 1.66061 1.03399 1.30522 1.16656 1.17607 0.86958 0.87135 0.97755 1.44198 1.08603 1.04551 1.73854 1.22414 0.91697 0.82413 0.73751 1.90641 1.17549 1.82741 1.44368 1.18918 0.92649 0.90196 0.97026 0.92727 1.21764 1.00187 0.99861 0.97341 1.21174 0.94179 0.89028 1.49561 0.90615 1.24947 0.94933 0.99314 0.95024 1.69873 1.05787 1.26967 1.50971 0.86371 0.80359 0.82915 0.77487 1.19495 1.21016 1.21007 1.25951 1.03154 0.94257 1.24358 1.83584 0.97410 1.13083 1.71095 0.89563 0.90176 0.88990 0.74909 0.88590 0.96870 0.94882 0.92949 0.80804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.46 36.01 0.38 -0.44 15 2 C 0.07 1.03 7.38 -13.44 -0.10 0.93 15 3 N -0.45 -8.77 8.45 -10.81 -0.09 -8.86 15 4 C 0.33 6.02 7.36 -155.64 -1.15 4.88 15 5 N -0.66 -12.62 5.30 -12.36 -0.07 -12.69 15 6 C 0.51 12.13 7.11 -10.99 -0.08 12.05 15 7 O -0.48 -13.24 13.98 5.53 0.08 -13.17 15 8 C 0.03 0.84 2.63 -92.93 -0.24 0.60 15 9 H 0.06 1.40 8.14 -51.92 -0.42 0.97 15 10 C -0.13 -3.08 8.87 37.15 0.33 -2.75 15 11 C -0.50 -14.34 8.38 -34.44 -0.29 -14.63 15 12 H 0.08 2.30 6.75 -52.49 -0.35 1.95 15 13 C 0.06 1.63 5.30 -17.82 -0.09 1.54 15 14 N -0.90 -25.15 11.32 55.43 0.63 -24.53 15 15 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 15 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 18 H -0.28 -6.81 7.11 56.52 0.40 -6.40 15 19 C -0.33 -4.72 11.30 29.30 0.33 -4.39 15 20 S 0.10 1.18 23.17 -107.50 -2.49 -1.31 15 21 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 23 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.41 6.38 8.36 -40.82 -0.34 6.04 15 25 H 0.10 2.42 6.07 -51.93 -0.32 2.10 15 26 H 0.01 0.24 7.69 -51.93 -0.40 -0.16 15 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 29 H 0.17 1.94 8.06 -52.49 -0.42 1.51 15 LS Contribution 267.84 15.07 4.04 4.04 Total: -1.00 -33.36 267.84 -6.92 -40.28 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.08 Total: 1.52 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.91 Total: -2.22 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.47 Total: -46.07 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.36 -6.92 -40.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597432916.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.152 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.22 seconds