Wall clock time and date at job start Mon Mar 30 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35356 * 116.99708 * 2 1 4 4 N 1.30554 * 125.44367 * 180.02562 * 3 2 1 5 5 C 1.36333 * 108.38236 * 180.02562 * 4 3 2 6 6 C 1.47366 * 126.41182 * 180.02562 * 5 4 3 7 7 O 1.21618 * 119.99599 * 180.02562 * 6 5 4 8 8 N 1.34768 * 120.00141 * 0.02562 * 6 5 4 9 9 C 1.46500 * 120.00056 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46845 * 35.00845 * 9 8 6 11 11 C 1.52997 * 109.47473 * 275.00296 * 9 8 6 12 12 C 1.50706 * 109.47187 * 154.99900 * 9 8 6 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.46754 * 90.00468 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00299 * 16 14 12 19 19 H 1.48498 * 109.47109 * 330.00728 * 16 14 12 20 20 C 1.35919 * 107.17312 * 0.25981 * 5 4 3 21 21 O 1.34194 * 125.44950 * 0.02562 * 3 2 1 22 22 H 1.08998 * 109.47450 * 299.99856 * 1 2 3 23 23 H 1.08997 * 109.47481 * 60.00187 * 1 2 3 24 24 H 1.08997 * 109.46933 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00396 * 0.02562 * 8 6 5 26 26 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 27 27 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 28 28 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 29 29 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 30 30 H 1.07996 * 126.45850 * 179.73859 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3978 -0.0005 5 6 3.5700 2.7407 0.0003 6 6 4.8891 3.3977 -0.0004 7 8 4.9638 4.6116 0.0008 8 7 6.0126 2.6534 -0.0025 9 6 7.3240 3.3066 -0.0038 10 1 7.2747 4.2215 0.5865 11 6 7.7225 3.6477 -1.4410 12 6 8.3486 2.3774 0.5946 13 1 8.0526 1.3982 0.9408 14 6 9.6640 2.7771 0.6991 15 7 10.0245 3.9694 0.2771 16 14 10.9341 1.6252 1.4402 17 1 11.5322 0.7914 0.3667 18 1 11.9997 2.4218 2.1000 19 1 10.2801 0.7466 2.4430 20 6 2.3602 3.3601 0.0071 21 8 1.4227 2.3958 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 5.9531 1.6853 -0.0039 26 1 6.9815 4.3197 -1.8738 27 1 7.7718 2.7326 -2.0312 28 1 8.6981 4.1341 -1.4419 29 1 10.9499 4.2507 0.3510 30 1 2.1847 4.4257 0.0135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599220348.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:44 Heat of formation + Delta-G solvation = -45.688429 kcal Electronic energy + Delta-G solvation = -16694.683906 eV Core-core repulsion = 13685.815260 eV Total energy + Delta-G solvation = -3008.868646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.37176 -39.06168 -38.56893 -34.85590 -34.76479 -32.28477 -30.13456 -28.78425 -27.61415 -25.22311 -24.09102 -22.42944 -21.04704 -19.67007 -18.86856 -17.52706 -17.25156 -16.44895 -15.95570 -15.30128 -15.21067 -15.17316 -14.23615 -13.98863 -13.50704 -13.00584 -12.54017 -12.35993 -12.11994 -11.70086 -11.09477 -11.02492 -10.85372 -10.68878 -10.67830 -10.29986 -10.18763 -9.38192 -9.00559 -8.65809 -8.51291 -7.88912 -6.07955 -4.16524 1.26618 1.87391 2.22885 2.74645 3.29508 3.35777 3.39214 3.89182 3.93071 4.39950 4.61964 4.69851 4.82788 5.01670 5.06178 5.24605 5.39003 5.59639 5.97785 6.57297 6.86138 7.00313 7.17228 7.42819 7.49331 7.65523 7.76087 7.95398 8.17581 8.68280 8.79729 9.08502 9.50364 10.98252 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.037919 B = 0.005247 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.230679 B = 5335.200428 C = 5880.902118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.246 6.246 3 C 0.370 3.630 4 N -0.450 5.450 5 C -0.032 4.032 6 C 0.584 3.416 7 O -0.550 6.550 8 N -0.684 5.684 9 C 0.261 3.739 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.532 4.532 13 H 0.063 0.937 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.903 3.097 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.014 4.014 21 O -0.230 6.230 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.400 0.600 26 H 0.015 0.985 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.264 0.736 30 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.897 -5.469 -1.069 18.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.154 6.154 3 C 0.124 3.876 4 N -0.196 5.196 5 C -0.151 4.151 6 C 0.367 3.633 7 O -0.430 6.430 8 N -0.330 5.330 9 C 0.160 3.840 10 H 0.070 0.930 11 C -0.206 4.206 12 C -0.571 4.571 13 H 0.081 0.919 14 C -0.137 4.137 15 N -0.522 5.522 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.085 4.085 21 O -0.121 6.121 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.135 0.865 25 H 0.233 0.767 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -17.181 -5.221 -1.080 17.989 hybrid contribution -0.147 -0.554 0.349 0.671 sum -17.328 -5.775 -0.731 18.279 Atomic orbital electron populations 1.23251 0.75516 1.05377 1.02860 1.86377 1.23335 1.16108 1.89539 1.23401 0.85776 0.79498 0.98912 1.71171 1.09423 1.16256 1.22730 1.22199 0.96776 0.87904 1.08223 1.16743 0.81973 0.86294 0.78287 1.90785 1.86588 1.12743 1.52847 1.46445 1.06654 1.10454 1.69442 1.18867 0.76588 0.94255 0.94271 0.93040 1.22086 1.02479 0.98861 0.97171 1.21229 0.92858 1.01632 1.41340 0.91872 1.24874 0.98280 0.95336 0.95171 1.69900 1.17951 1.18321 1.46076 0.86423 0.80799 0.80469 0.79282 1.20528 1.21104 1.19801 1.24936 0.85006 0.93596 1.05005 1.84337 1.39674 1.15861 1.72265 0.91550 0.91556 0.86521 0.76661 0.96554 0.95292 0.88960 0.92596 0.74879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.73 101.05 1.08 1.24 16 2 O -0.25 -2.88 10.55 -40.99 -0.43 -3.31 16 3 C 0.37 5.30 8.98 52.22 0.47 5.77 16 4 N -0.45 -7.84 11.10 -11.71 -0.13 -7.97 16 5 C -0.03 -0.56 6.99 -82.98 -0.58 -1.14 16 6 C 0.58 12.64 7.78 -12.55 -0.10 12.55 16 7 O -0.55 -13.21 16.55 5.26 0.09 -13.12 16 8 N -0.68 -15.64 5.07 -56.03 -0.28 -15.93 16 9 C 0.26 6.90 2.56 -69.08 -0.18 6.72 16 10 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 11 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 12 C -0.53 -14.58 8.73 -34.44 -0.30 -14.88 16 13 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 14 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 15 N -0.88 -25.19 11.32 55.43 0.63 -24.57 16 16 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 C -0.01 -0.19 11.93 29.90 0.36 0.17 16 21 O -0.23 -2.94 10.20 -17.74 -0.18 -3.12 16 22 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.40 8.58 8.27 -40.82 -0.34 8.25 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.24 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 274.63 15.07 4.14 4.14 Total: -1.00 -32.15 274.63 -3.31 -35.47 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.12 Total: 3.62 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 1.00 Total: 8.73 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.21 Total: -48.47 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.53 Total: -19.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.15 -3.31 -35.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599220348.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.221 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds