Wall clock time and date at job start Mon Mar 30 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35356 * 116.99708 * 2 1 4 4 N 1.30554 * 125.44367 * 180.02562 * 3 2 1 5 5 C 1.36333 * 108.38236 * 180.02562 * 4 3 2 6 6 C 1.47366 * 126.41182 * 180.02562 * 5 4 3 7 7 O 1.21618 * 119.99599 * 180.02562 * 6 5 4 8 8 N 1.34768 * 120.00141 * 0.02562 * 6 5 4 9 9 C 1.46500 * 120.00056 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.46845 * 35.00845 * 9 8 6 11 11 C 1.52997 * 109.47473 * 275.00296 * 9 8 6 12 12 C 1.50706 * 109.47187 * 154.99900 * 9 8 6 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.46754 * 90.00468 * 16 14 12 18 18 H 1.48498 * 109.47278 * 210.00299 * 16 14 12 19 19 H 1.48498 * 109.47109 * 330.00728 * 16 14 12 20 20 C 1.35919 * 107.17312 * 0.25981 * 5 4 3 21 21 O 1.34194 * 125.44950 * 0.02562 * 3 2 1 22 22 H 1.08998 * 109.47450 * 299.99856 * 1 2 3 23 23 H 1.08997 * 109.47481 * 60.00187 * 1 2 3 24 24 H 1.08997 * 109.46933 * 180.02562 * 1 2 3 25 25 H 0.97001 * 120.00396 * 0.02562 * 8 6 5 26 26 H 1.09002 * 109.47153 * 59.99757 * 11 9 8 27 27 H 1.09001 * 109.46832 * 299.99948 * 11 9 8 28 28 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 29 29 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 30 30 H 1.07996 * 126.45850 * 179.73859 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3978 -0.0005 5 6 3.5700 2.7407 0.0003 6 6 4.8891 3.3977 -0.0004 7 8 4.9638 4.6116 0.0008 8 7 6.0126 2.6534 -0.0025 9 6 7.3240 3.3066 -0.0038 10 1 7.2747 4.2215 0.5865 11 6 7.7225 3.6477 -1.4410 12 6 8.3486 2.3774 0.5946 13 1 8.0526 1.3982 0.9408 14 6 9.6640 2.7771 0.6991 15 7 10.0245 3.9694 0.2771 16 14 10.9341 1.6252 1.4402 17 1 11.5322 0.7914 0.3667 18 1 11.9997 2.4218 2.1000 19 1 10.2801 0.7466 2.4430 20 6 2.3602 3.3601 0.0071 21 8 1.4227 2.3958 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 5.9531 1.6853 -0.0039 26 1 6.9815 4.3197 -1.8738 27 1 7.7718 2.7326 -2.0312 28 1 8.6981 4.1341 -1.4419 29 1 10.9499 4.2507 0.3510 30 1 2.1847 4.4257 0.0135 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599220348.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:44 Heat of formation + Delta-G solvation = -73.035066 kcal Electronic energy + Delta-G solvation = -16695.869745 eV Core-core repulsion = 13685.815260 eV Total energy + Delta-G solvation = -3010.054485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.51733 -40.51680 -39.72830 -36.77430 -36.04205 -34.28329 -31.48012 -30.56282 -28.27452 -27.34893 -25.56778 -23.59744 -22.63628 -21.37690 -20.24291 -18.78680 -18.56642 -17.84186 -17.31397 -17.13884 -16.30843 -16.18290 -16.03564 -15.65171 -14.92873 -14.51218 -14.39032 -13.72890 -13.07732 -13.03634 -12.96943 -12.85598 -12.73474 -12.29906 -12.14958 -12.03797 -11.87529 -11.17443 -11.10372 -10.60326 -9.93772 -9.67074 -8.17568 -6.34729 0.06601 0.87193 0.96856 1.45905 1.46646 1.57635 1.75772 2.29035 2.32459 2.51830 3.12652 3.52265 3.79383 4.16510 4.23610 4.27555 4.44477 4.66419 4.67772 4.77912 4.92540 5.06983 5.39924 5.55938 5.62164 5.66533 5.85870 6.07829 6.44064 6.70204 6.87749 7.25416 7.41512 8.88964 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.037919 B = 0.005247 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.230679 B = 5335.200428 C = 5880.902118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.255 6.255 3 C 0.382 3.618 4 N -0.488 5.488 5 C -0.073 4.073 6 C 0.586 3.414 7 O -0.581 6.581 8 N -0.688 5.688 9 C 0.268 3.732 10 H 0.010 0.990 11 C -0.134 4.134 12 C -0.551 4.551 13 H 0.067 0.933 14 C 0.018 3.982 15 N -0.914 5.914 16 Si 0.974 3.026 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.029 3.971 21 O -0.212 6.212 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.147 0.853 25 H 0.406 0.594 26 H 0.017 0.983 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.267 0.733 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.526 -6.781 -0.875 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.163 6.163 3 C 0.136 3.864 4 N -0.234 5.234 5 C -0.191 4.191 6 C 0.372 3.628 7 O -0.463 6.463 8 N -0.335 5.335 9 C 0.165 3.835 10 H 0.028 0.972 11 C -0.192 4.192 12 C -0.589 4.589 13 H 0.085 0.915 14 C -0.182 4.182 15 N -0.553 5.553 16 Si 0.798 3.202 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.192 1.192 20 C -0.043 4.043 21 O -0.102 6.102 22 H 0.095 0.905 23 H 0.096 0.904 24 H 0.165 0.835 25 H 0.241 0.759 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -18.851 -6.565 -0.891 19.981 hybrid contribution 0.175 -0.162 0.286 0.372 sum -18.676 -6.726 -0.605 19.859 Atomic orbital electron populations 1.23720 0.72545 1.07799 1.03963 1.86427 1.26244 1.14593 1.89060 1.23412 0.85387 0.80448 0.97193 1.71018 1.11470 1.16176 1.24714 1.21568 0.95795 0.88787 1.12915 1.17127 0.83013 0.85953 0.76735 1.90750 1.87412 1.14080 1.54086 1.46234 1.06103 1.10705 1.70419 1.18517 0.78349 0.92831 0.93830 0.97248 1.21905 1.01327 0.98982 0.97021 1.21498 0.93550 1.01933 1.41903 0.91474 1.25754 1.00254 0.96848 0.95343 1.70028 1.18543 1.19952 1.46728 0.85324 0.77937 0.78355 0.78592 1.19591 1.20750 1.19206 1.25506 0.83697 0.94721 1.00414 1.84401 1.38765 1.15359 1.71715 0.90463 0.90409 0.83522 0.75930 0.96372 0.94411 0.90915 0.92357 0.71619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.73 113.37 1.22 1.34 16 2 O -0.25 -5.37 10.55 -64.25 -0.68 -6.05 16 3 C 0.38 10.18 8.98 130.43 1.17 11.35 16 4 N -0.49 -16.60 11.10 -419.39 -4.65 -21.26 16 5 C -0.07 -2.54 6.99 40.31 0.28 -2.26 16 6 C 0.59 25.77 7.78 86.65 0.67 26.45 16 7 O -0.58 -28.51 16.55 -4.09 -0.07 -28.58 16 8 N -0.69 -32.27 5.07 -449.43 -2.28 -34.55 16 9 C 0.27 14.57 2.56 44.25 0.11 14.68 16 10 H 0.01 0.60 7.58 -2.39 -0.02 0.58 16 11 C -0.13 -7.00 9.26 71.98 0.67 -6.33 16 12 C -0.55 -30.62 8.73 25.60 0.22 -30.40 16 13 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 14 C 0.02 1.01 5.30 84.65 0.45 1.46 16 15 N -0.91 -52.94 11.32 21.45 0.24 -52.70 16 16 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 19 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.03 0.74 11.93 67.28 0.80 1.54 16 21 O -0.21 -4.77 10.20 18.94 0.19 -4.58 16 22 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 23 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.41 17.82 8.27 -92.71 -0.77 17.05 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.07 4.09 6.07 -2.38 -0.01 4.08 16 29 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.27 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -70.66 274.63 0.79 -69.87 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.41 Total: 14.81 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 5.60 Total: 17.83 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -6.69 Total: -108.50 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.55 Total: -39.21 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -70.66 0.79 -69.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599220348.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.164 kcal (2) G-P(sol) polarization free energy of solvation -70.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds