Wall clock time and date at job start Mon Mar 30 2020 04:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35671 * 117.00093 * 2 1 4 4 C 1.39114 * 120.07323 * 180.02562 * 3 2 1 5 5 N 1.31976 * 119.91845 * 179.97438 * 4 3 2 6 6 C 1.32244 * 120.05950 * 359.97438 * 5 4 3 7 7 C 1.38183 * 120.14774 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.95298 * 179.97438 * 7 6 5 9 9 S 1.81404 * 109.46999 * 90.00316 * 8 7 6 10 10 C 1.81401 * 102.99948 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47293 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99759 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00428 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99752 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00364 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46855 * 90.00148 * 15 13 11 17 17 H 1.48498 * 109.47286 * 209.99992 * 15 13 11 18 18 H 1.48495 * 109.46915 * 330.00396 * 15 13 11 19 19 N 1.32236 * 120.08676 * 359.97438 * 7 6 5 20 20 H 1.09000 * 109.47506 * 60.00261 * 1 2 3 21 21 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47371 * 300.00075 * 1 2 3 23 23 H 1.08002 * 120.04306 * 359.97438 * 4 3 2 24 24 H 1.07999 * 119.91883 * 180.02562 * 6 5 4 25 25 H 1.09007 * 109.47102 * 209.99851 * 8 7 6 26 26 H 1.08995 * 109.47506 * 330.00029 * 8 7 6 27 27 H 1.08996 * 109.47340 * 300.00330 * 10 9 8 28 28 H 1.09009 * 109.47099 * 60.00137 * 10 9 8 29 29 H 0.97002 * 119.99824 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4341 1.2834 -0.0005 5 7 4.0301 2.4609 -0.0010 6 6 3.3080 3.5688 -0.0016 7 6 1.9280 3.4978 -0.0010 8 6 1.1094 4.7631 -0.0010 9 16 0.7803 5.2703 -1.7113 10 6 -0.1993 6.7833 -1.5069 11 6 -0.5575 7.3368 -2.8620 12 1 -0.2291 6.8289 -3.7568 13 6 -1.3045 8.4915 -2.9597 14 7 -1.7040 9.1103 -1.8701 15 14 -1.7479 9.1780 -4.6395 16 1 -3.0409 8.5994 -5.0850 17 1 -1.8700 10.6554 -4.5540 18 1 -0.6853 8.8247 -5.6147 19 7 1.3247 2.3210 -0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 4.0241 0.3788 -0.0005 24 1 3.7981 4.5312 -0.0024 25 1 0.1649 4.5848 0.5132 26 1 1.6594 5.5517 0.5124 27 1 -1.1109 6.5542 -0.9551 28 1 0.3832 7.5216 -0.9557 29 1 -2.2299 9.9225 -1.9388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600558520.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:13 Heat of formation + Delta-G solvation = 1.275759 kcal Electronic energy + Delta-G solvation = -14048.297344 eV Core-core repulsion = 11484.218089 eV Total energy + Delta-G solvation = -2564.079255 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.30108 -38.49366 -34.49346 -33.19553 -32.10445 -28.77752 -28.46508 -27.05653 -23.84820 -23.45926 -22.60583 -18.41929 -17.80519 -16.78826 -16.57116 -16.33527 -15.44092 -14.77762 -14.70963 -14.21170 -13.81195 -13.24491 -12.99949 -12.68566 -12.40692 -12.11052 -11.99099 -11.68371 -11.49263 -11.06155 -10.90574 -10.66791 -10.06001 -9.68110 -9.28163 -8.96484 -8.65752 -8.61310 -6.79130 -6.23935 -4.28493 0.70279 1.10514 2.52123 2.83964 3.23911 3.29723 3.34859 3.69280 3.75753 3.92601 4.25274 4.32203 4.49449 4.88549 5.09061 5.13499 5.19135 5.22160 5.35241 5.52938 5.58016 5.80360 6.07414 6.92318 7.02572 7.04384 7.20906 7.70437 7.72189 7.95069 8.73181 9.34949 10.87264 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.040713 B = 0.004727 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.579548 B = 5922.006762 C = 6212.747751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.303 6.303 3 C 0.276 3.724 4 C 0.030 3.970 5 N -0.402 5.402 6 C 0.020 3.980 7 C 0.158 3.842 8 C -0.050 4.050 9 S -0.281 6.281 10 C 0.090 3.910 11 C -0.513 4.513 12 H 0.067 0.933 13 C 0.066 3.934 14 N -0.892 5.892 15 Si 0.907 3.093 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.271 1.271 19 N -0.487 5.487 20 H 0.064 0.936 21 H 0.098 0.902 22 H 0.060 0.940 23 H 0.174 0.826 24 H 0.175 0.825 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.082 -13.650 5.843 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.208 6.208 3 C 0.093 3.907 4 C -0.134 4.134 5 N -0.116 5.116 6 C -0.140 4.140 7 C 0.018 3.982 8 C -0.199 4.199 9 S -0.053 6.053 10 C -0.057 4.057 11 C -0.553 4.553 12 H 0.085 0.915 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.734 3.266 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.195 1.195 19 N -0.217 5.217 20 H 0.083 0.917 21 H 0.116 0.884 22 H 0.079 0.921 23 H 0.191 0.809 24 H 0.192 0.808 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.379 -14.252 4.988 16.392 hybrid contribution -1.099 1.141 0.304 1.613 sum 5.280 -13.111 5.292 15.093 Atomic orbital electron populations 1.22947 0.76780 1.03136 1.03047 1.86241 1.23327 1.23662 1.87576 1.20972 0.90967 0.85513 0.93229 1.22835 0.89630 0.97534 1.03404 1.68468 1.38451 0.97793 1.06875 1.23403 0.91377 0.98302 1.00933 1.21351 0.92495 0.91934 0.92437 1.22124 1.02263 0.94257 1.01261 1.86929 1.73411 1.38893 1.06106 1.21122 0.95209 0.87902 1.01426 1.20647 1.34432 1.09198 0.91010 0.91458 1.24953 0.95215 0.96093 0.97503 1.69950 1.36573 1.18727 1.27777 0.86339 0.79040 0.78002 0.83223 1.20323 1.20920 1.19522 1.67855 1.40044 0.98092 1.15748 0.91723 0.88373 0.92142 0.80880 0.80762 0.88547 0.88287 0.94393 0.94298 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.40 101.05 1.05 1.42 15 2 O -0.30 -3.76 10.49 -18.72 -0.20 -3.95 15 3 C 0.28 3.87 7.49 -16.94 -0.13 3.74 15 4 C 0.03 0.38 11.18 -17.16 -0.19 0.19 15 5 N -0.40 -5.62 10.49 -12.93 -0.14 -5.75 15 6 C 0.02 0.28 10.86 -17.39 -0.19 0.09 15 7 C 0.16 2.46 6.04 -82.44 -0.50 1.96 15 8 C -0.05 -0.83 6.25 36.01 0.22 -0.61 15 9 S -0.28 -5.99 21.64 -107.50 -2.33 -8.32 15 10 C 0.09 2.28 5.70 36.01 0.21 2.48 15 11 C -0.51 -14.27 9.13 -34.44 -0.31 -14.59 15 12 H 0.07 1.88 7.71 -52.49 -0.40 1.48 15 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 14 N -0.89 -25.53 13.29 55.43 0.74 -24.80 15 15 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 15 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 19 N -0.49 -7.68 9.32 -9.36 -0.09 -7.76 15 20 H 0.06 0.73 8.11 -51.93 -0.42 0.31 15 21 H 0.10 0.70 8.14 -51.93 -0.42 0.27 15 22 H 0.06 0.62 8.11 -51.92 -0.42 0.20 15 23 H 0.17 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.18 2.09 8.06 -52.49 -0.42 1.66 15 25 H 0.10 1.59 8.14 -51.92 -0.42 1.16 15 26 H 0.10 1.43 8.08 -51.93 -0.42 1.01 15 27 H 0.04 1.00 8.14 -51.93 -0.42 0.57 15 28 H 0.04 1.00 8.14 -51.92 -0.42 0.58 15 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 LS Contribution 277.60 15.07 4.18 4.18 Total: -1.00 -30.33 277.60 -6.12 -36.45 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.34 Total: -2.62 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 0.06 Total: -3.57 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.51 Total: -38.31 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.20 Total: -3.95 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -2.33 Total: -8.32 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.33 -6.12 -36.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600558520.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.731 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds