Wall clock time and date at job start Mon Mar 30 2020 04:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35671 * 117.00093 * 2 1 4 4 C 1.39114 * 120.07323 * 180.02562 * 3 2 1 5 5 N 1.31976 * 119.91845 * 179.97438 * 4 3 2 6 6 C 1.32244 * 120.05950 * 359.97438 * 5 4 3 7 7 C 1.38183 * 120.14774 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.95298 * 179.97438 * 7 6 5 9 9 S 1.81404 * 109.46999 * 90.00316 * 8 7 6 10 10 C 1.81401 * 102.99948 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47293 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99759 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00428 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99752 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00364 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46855 * 90.00148 * 15 13 11 17 17 H 1.48498 * 109.47286 * 209.99992 * 15 13 11 18 18 H 1.48495 * 109.46915 * 330.00396 * 15 13 11 19 19 N 1.32236 * 120.08676 * 359.97438 * 7 6 5 20 20 H 1.09000 * 109.47506 * 60.00261 * 1 2 3 21 21 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47371 * 300.00075 * 1 2 3 23 23 H 1.08002 * 120.04306 * 359.97438 * 4 3 2 24 24 H 1.07999 * 119.91883 * 180.02562 * 6 5 4 25 25 H 1.09007 * 109.47102 * 209.99851 * 8 7 6 26 26 H 1.08995 * 109.47506 * 330.00029 * 8 7 6 27 27 H 1.08996 * 109.47340 * 300.00330 * 10 9 8 28 28 H 1.09009 * 109.47099 * 60.00137 * 10 9 8 29 29 H 0.97002 * 119.99824 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4341 1.2834 -0.0005 5 7 4.0301 2.4609 -0.0010 6 6 3.3080 3.5688 -0.0016 7 6 1.9280 3.4978 -0.0010 8 6 1.1094 4.7631 -0.0010 9 16 0.7803 5.2703 -1.7113 10 6 -0.1993 6.7833 -1.5069 11 6 -0.5575 7.3368 -2.8620 12 1 -0.2291 6.8289 -3.7568 13 6 -1.3045 8.4915 -2.9597 14 7 -1.7040 9.1103 -1.8701 15 14 -1.7479 9.1780 -4.6395 16 1 -3.0409 8.5994 -5.0850 17 1 -1.8700 10.6554 -4.5540 18 1 -0.6853 8.8247 -5.6147 19 7 1.3247 2.3210 -0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 4.0241 0.3788 -0.0005 24 1 3.7981 4.5312 -0.0024 25 1 0.1649 4.5848 0.5132 26 1 1.6594 5.5517 0.5124 27 1 -1.1109 6.5542 -0.9551 28 1 0.3832 7.5216 -0.9557 29 1 -2.2299 9.9225 -1.9388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600558520.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:11 Heat of formation + Delta-G solvation = -19.957691 kcal Electronic energy + Delta-G solvation = -14049.218095 eV Core-core repulsion = 11484.218089 eV Total energy + Delta-G solvation = -2565.000007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -42.37921 -39.47132 -35.62344 -35.29821 -33.23739 -30.70599 -29.71570 -28.05479 -25.34225 -24.87178 -23.98461 -19.46354 -18.98574 -18.54012 -17.79829 -17.45776 -17.12336 -16.42959 -15.71646 -15.50920 -15.01495 -14.80651 -14.52381 -14.28475 -13.98944 -13.71273 -13.07376 -12.74998 -12.68980 -12.65103 -12.51604 -12.34460 -11.76723 -11.53124 -10.80815 -10.75117 -10.36048 -9.71265 -8.52912 -8.34172 -6.47146 -0.44802 0.00405 1.02900 1.40591 1.41035 1.53533 1.88044 1.92794 2.36276 2.64535 2.77154 3.00847 3.20872 3.45610 3.72443 4.01633 4.28893 4.36820 4.39344 4.46911 4.55340 4.71902 4.94386 4.95213 5.03901 5.56100 5.87402 5.92302 6.11906 6.59730 6.63591 7.20939 8.77596 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.040713 B = 0.004727 C = 0.004506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.579548 B = 5922.006762 C = 6212.747751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.302 6.302 3 C 0.266 3.734 4 C 0.046 3.954 5 N -0.412 5.412 6 C 0.024 3.976 7 C 0.136 3.864 8 C -0.033 4.033 9 S -0.294 6.294 10 C 0.094 3.906 11 C -0.538 4.538 12 H 0.060 0.940 13 C 0.017 3.983 14 N -0.923 5.923 15 Si 0.974 3.026 16 H -0.270 1.270 17 H -0.274 1.274 18 H -0.266 1.266 19 N -0.506 5.506 20 H 0.049 0.951 21 H 0.133 0.867 22 H 0.056 0.944 23 H 0.209 0.791 24 H 0.193 0.807 25 H 0.094 0.906 26 H 0.121 0.879 27 H 0.017 0.983 28 H 0.025 0.975 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 -14.769 5.588 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.207 6.207 3 C 0.082 3.918 4 C -0.119 4.119 5 N -0.126 5.126 6 C -0.135 4.135 7 C -0.003 4.003 8 C -0.181 4.181 9 S -0.067 6.067 10 C -0.054 4.054 11 C -0.576 4.576 12 H 0.078 0.922 13 C -0.184 4.184 14 N -0.562 5.562 15 Si 0.798 3.202 16 H -0.195 1.195 17 H -0.199 1.199 18 H -0.191 1.191 19 N -0.237 5.237 20 H 0.068 0.932 21 H 0.151 0.849 22 H 0.075 0.925 23 H 0.225 0.775 24 H 0.210 0.790 25 H 0.112 0.888 26 H 0.139 0.861 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.173 -15.360 4.733 17.601 hybrid contribution -1.296 1.306 0.478 1.901 sum 5.877 -14.055 5.211 16.101 Atomic orbital electron populations 1.23130 0.75698 1.05192 1.02093 1.86252 1.24337 1.22739 1.87341 1.21246 0.91640 0.85479 0.93389 1.23439 0.89482 0.98332 1.00652 1.68575 1.38418 0.98118 1.07463 1.23661 0.90798 0.99314 0.99759 1.21178 0.92920 0.91382 0.94857 1.22092 1.02904 0.95689 0.97457 1.86743 1.72395 1.36539 1.10979 1.20792 0.94803 0.89723 1.00032 1.20961 1.35052 1.09895 0.91739 0.92169 1.25858 0.94824 0.96261 1.01425 1.70045 1.37022 1.19189 1.29916 0.85305 0.78891 0.77580 0.78462 1.19542 1.19921 1.19063 1.67759 1.41135 0.98723 1.16100 0.93236 0.84854 0.92504 0.77451 0.78983 0.88773 0.86094 0.96508 0.95715 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.40 113.37 1.18 1.82 15 2 O -0.30 -6.88 10.49 -89.88 -0.94 -7.82 15 3 C 0.27 6.98 7.49 84.80 0.64 7.61 15 4 C 0.05 1.04 11.18 84.88 0.95 1.99 15 5 N -0.41 -10.55 10.49 -194.81 -2.04 -12.59 15 6 C 0.02 0.63 10.86 84.62 0.92 1.55 15 7 C 0.14 4.09 6.04 42.48 0.26 4.35 15 8 C -0.03 -1.07 6.25 71.24 0.44 -0.62 15 9 S -0.29 -12.67 21.64 -56.49 -1.22 -13.89 15 10 C 0.09 4.88 5.70 71.24 0.41 5.29 15 11 C -0.54 -30.45 9.13 25.60 0.23 -30.21 15 12 H 0.06 3.42 7.71 -2.91 -0.02 3.39 15 13 C 0.02 0.97 5.46 84.65 0.46 1.43 15 14 N -0.92 -53.47 13.29 21.45 0.28 -53.19 15 15 Si 0.97 43.32 29.54 68.60 2.03 45.35 15 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 17 H -0.27 -11.69 7.11 99.48 0.71 -10.99 15 18 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15 19 N -0.51 -15.48 9.32 -296.28 -2.76 -18.24 15 20 H 0.05 1.09 8.11 -2.39 -0.02 1.07 15 21 H 0.13 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.06 1.12 8.11 -2.38 -0.02 1.10 15 23 H 0.21 3.14 8.06 -2.91 -0.02 3.12 15 24 H 0.19 4.22 8.06 -2.91 -0.02 4.20 15 25 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 26 H 0.12 3.38 8.08 -2.39 -0.02 3.36 15 27 H 0.02 0.91 8.14 -2.39 -0.02 0.90 15 28 H 0.02 1.32 8.14 -2.39 -0.02 1.30 15 29 H 0.27 14.63 8.31 -92.71 -0.77 13.85 15 Total: -1.00 -65.02 277.60 1.97 -63.05 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: 1.15 Total: 4.13 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.49 Total: -6.80 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -4.52 Total: -84.02 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.94 Total: -7.82 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -12.67 SS G_CDS: -1.22 Total: -13.89 kcal Total: -65.02 1.97 -63.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600558520.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.093 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds