Wall clock time and date at job start Mon Mar 30 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47570 * 7.71449 * 3 2 1 5 5 C 1.37104 * 119.99763 * 264.23509 * 4 3 2 6 6 H 1.08007 * 119.99691 * 197.72520 * 5 4 3 7 7 C 1.38945 * 120.00544 * 17.71780 * 5 4 3 8 8 N 1.31412 * 119.99445 * 21.40331 * 7 5 4 9 9 Si 1.86795 * 120.00261 * 201.40217 * 7 5 4 10 10 H 1.48504 * 109.46883 * 90.00191 * 9 7 5 11 11 H 1.48502 * 109.47034 * 209.99779 * 9 7 5 12 12 H 1.48499 * 109.47284 * 330.00409 * 9 7 5 13 13 C 1.34769 * 120.00015 * 84.23027 * 4 3 2 14 14 O 1.21301 * 120.00342 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00251 * 0.02562 * 13 4 3 16 16 C 1.52998 * 109.47472 * 179.97438 * 15 13 4 17 17 C 1.53041 * 113.15513 * 185.00286 * 16 15 13 18 18 S 1.81428 * 89.93334 * 211.83467 * 17 16 15 19 19 C 1.53044 * 113.15112 * 84.62930 * 16 15 13 20 20 H 1.09005 * 109.46705 * 247.71001 * 3 2 1 21 21 H 1.09005 * 109.46913 * 127.71641 * 3 2 1 22 22 H 0.97001 * 119.99681 * 180.02562 * 8 7 5 23 23 H 1.09001 * 109.46633 * 60.00014 * 15 13 4 24 24 H 1.08997 * 109.47069 * 300.00373 * 15 13 4 25 25 H 1.09003 * 112.52564 * 314.81562 * 16 15 13 26 26 H 1.09003 * 113.14463 * 327.11292 * 17 16 15 27 27 H 1.08994 * 113.14962 * 96.55035 * 17 16 15 28 28 H 1.09004 * 113.14668 * 263.40817 * 19 16 15 29 29 H 1.08999 * 113.14745 * 32.84489 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3677 -0.1854 5 6 3.4383 -2.1272 0.9039 6 1 4.0553 -3.0048 0.7784 7 6 2.9908 -1.7678 2.1692 8 7 1.9370 -0.9933 2.2980 9 14 3.8870 -2.3855 3.6873 10 1 4.9512 -1.4196 4.0611 11 1 2.9243 -2.5203 4.8099 12 1 4.4981 -3.7076 3.3977 13 6 3.2113 -1.8801 -1.4266 14 8 3.6158 -3.0134 -1.5802 15 6 2.8366 -1.0452 -2.6240 16 6 3.0587 -1.8571 -3.9016 17 6 2.8195 -1.0477 -5.1782 18 16 2.2458 -2.5489 -6.0201 19 6 1.8735 -2.7585 -4.2554 20 1 2.9711 0.3906 0.9509 21 1 2.9710 0.6295 -0.8130 22 1 1.6248 -0.7421 3.1813 23 1 3.4570 -0.1494 -2.6507 24 1 1.7874 -0.7585 -2.5530 25 1 4.0128 -2.3842 -3.9009 26 1 2.0399 -0.2938 -5.0678 27 1 3.7358 -0.6404 -5.6054 28 1 1.9977 -3.7849 -3.9100 29 1 0.9117 -2.3348 -3.9664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601025364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:38 Heat of formation + Delta-G solvation = 2.660030 kcal Electronic energy + Delta-G solvation = -15055.005561 eV Core-core repulsion = 12490.986332 eV Total energy + Delta-G solvation = -2564.019229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.70901 -38.03457 -37.19507 -36.04212 -33.72710 -30.19545 -28.95928 -27.17635 -26.35352 -22.20113 -20.49679 -19.69561 -18.21972 -17.85148 -17.36552 -16.74082 -16.32118 -15.91182 -15.35638 -14.66977 -14.57631 -14.23093 -13.93552 -13.84063 -13.66471 -13.32800 -13.05611 -12.89924 -12.74488 -12.28840 -12.18417 -12.14011 -12.03368 -11.64009 -11.08947 -11.00907 -10.31998 -9.86660 -8.83620 -8.37207 -5.91776 0.84248 0.99844 1.42054 1.50464 1.59462 1.88774 2.13124 2.31697 2.39188 3.04143 3.10541 3.48923 3.67702 3.81991 3.89269 4.22222 4.39059 4.46402 4.56368 4.59466 4.69387 4.79479 4.93179 4.99410 5.27515 5.52741 6.09471 6.45129 7.07256 7.18582 7.43008 8.00134 8.66287 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.036979 B = 0.006632 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.012547 B = 4221.029848 C = 4686.667637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.259 3.741 3 C 0.220 3.780 4 N -0.459 5.459 5 C -0.338 4.338 6 H 0.080 0.920 7 C 0.006 3.994 8 N -0.893 5.893 9 Si 0.981 3.019 10 H -0.259 1.259 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.451 3.549 14 O -0.615 6.615 15 C -0.115 4.115 16 C -0.065 4.065 17 C -0.049 4.049 18 S -0.361 6.361 19 C -0.067 4.067 20 H 0.121 0.879 21 H 0.147 0.853 22 H 0.273 0.727 23 H 0.139 0.861 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 7.045 -8.054 11.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.059 4.059 3 C 0.094 3.906 4 N -0.179 5.179 5 C -0.465 4.465 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.532 5.532 9 Si 0.807 3.193 10 H -0.184 1.184 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.241 3.759 14 O -0.501 6.501 15 C -0.157 4.157 16 C -0.086 4.086 17 C -0.196 4.196 18 S -0.135 6.135 19 C -0.215 4.215 20 H 0.138 0.862 21 H 0.164 0.836 22 H 0.083 0.917 23 H 0.156 0.844 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.146 0.854 27 H 0.139 0.861 28 H 0.094 0.906 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.460 5.910 -9.300 11.290 hybrid contribution 0.373 -0.416 2.164 2.235 sum 2.832 5.493 -7.136 9.440 Atomic orbital electron populations 1.80919 1.14903 1.09944 1.13470 1.29833 0.95859 0.91086 0.89099 1.19126 0.79936 0.85109 1.06478 1.43832 1.56876 1.11942 1.05224 1.19583 1.30608 1.11111 0.85240 0.90181 1.25794 0.95193 0.97527 1.01084 1.69935 1.20317 1.37682 1.25268 0.85098 0.78192 0.78738 0.77313 1.18400 1.21573 1.20486 1.21095 0.82028 0.87734 0.85029 1.90535 1.51717 1.21656 1.86156 1.21668 1.04181 0.99722 0.90154 1.22148 0.98630 0.94670 0.93120 1.24422 1.06233 0.96012 0.92969 1.89026 1.81775 1.27231 1.15496 1.24466 1.02755 1.04721 0.89588 0.86154 0.83578 0.91736 0.84365 0.88798 0.87895 0.85388 0.86099 0.90606 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.57 18.54 20.01 0.37 -22.20 15 2 C 0.26 10.25 12.95 89.44 1.16 11.41 15 3 C 0.22 7.46 4.91 84.57 0.42 7.88 15 4 N -0.46 -19.46 2.60 -645.41 -1.68 -21.14 15 5 C -0.34 -16.78 9.32 84.04 0.78 -15.99 15 6 H 0.08 4.36 7.39 -2.91 -0.02 4.34 15 7 C 0.01 0.29 4.87 84.93 0.41 0.70 15 8 N -0.89 -43.10 9.48 21.66 0.21 -42.90 15 9 Si 0.98 39.12 29.60 68.60 2.03 41.15 15 10 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 11 H -0.29 -11.68 7.11 99.48 0.71 -10.97 15 12 H -0.28 -11.54 7.11 99.48 0.71 -10.84 15 13 C 0.45 18.04 7.56 87.66 0.66 18.71 15 14 O -0.62 -30.15 15.43 -3.09 -0.05 -30.20 15 15 C -0.12 -2.99 4.08 29.85 0.12 -2.87 15 16 C -0.07 -1.68 2.80 -10.77 -0.03 -1.71 15 17 C -0.05 -0.93 7.49 72.00 0.54 -0.39 15 18 S -0.36 -9.90 24.80 -56.49 -1.40 -11.30 15 19 C -0.07 -1.93 7.49 72.00 0.54 -1.39 15 20 H 0.12 4.32 6.46 -2.38 -0.02 4.31 15 21 H 0.15 3.10 6.68 -2.38 -0.02 3.08 15 22 H 0.27 12.82 8.31 -92.71 -0.77 12.05 15 23 H 0.14 2.37 7.42 -2.39 -0.02 2.35 15 24 H 0.09 2.35 7.26 -2.39 -0.02 2.34 15 25 H 0.10 3.05 7.71 -2.39 -0.02 3.03 15 26 H 0.13 1.91 8.12 -2.39 -0.02 1.89 15 27 H 0.12 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 15 29 H 0.11 2.90 7.94 -2.39 -0.02 2.88 15 Total: -1.00 -65.66 266.82 5.25 -60.41 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 1.17 Total: 9.84 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 4.60 Total: 16.34 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -1.10 Total: -86.24 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.05 Total: -30.20 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Atomic # 16 Polarization: -9.90 SS G_CDS: -1.40 Total: -11.30 kcal Total: -65.66 5.25 -60.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601025364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.072 kcal (2) G-P(sol) polarization free energy of solvation -65.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds