Wall clock time and date at job start Mon Mar 30 2020 04:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47057 * 2 1 4 4 N 1.46494 * 109.47492 * 120.00002 * 2 1 3 5 5 C 1.36983 * 120.00250 * 138.87047 * 4 2 1 6 6 H 1.07998 * 120.00273 * 176.61020 * 5 4 2 7 7 C 1.38973 * 119.99908 * 356.89347 * 5 4 2 8 8 N 1.31422 * 120.00281 * 57.81030 * 7 5 4 9 9 Si 1.86801 * 120.00118 * 237.81151 * 7 5 4 10 10 H 1.48507 * 109.46843 * 60.00128 * 9 7 5 11 11 H 1.48496 * 109.47087 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47372 * 300.00103 * 9 7 5 13 13 C 1.34776 * 120.00233 * 318.87751 * 4 2 1 14 14 O 1.21638 * 120.00495 * 185.51945 * 13 4 2 15 15 C 1.47271 * 119.99525 * 5.51732 * 13 4 2 16 16 C 1.39279 * 123.09353 * 148.87045 * 15 13 4 17 17 N 1.29507 * 116.93321 * 179.97438 * 16 15 13 18 18 S 1.69472 * 107.86193 * 0.02562 * 17 16 15 19 19 C 1.37950 * 123.09981 * 328.57937 * 15 13 4 20 20 H 1.08999 * 109.47045 * 246.32329 * 1 2 3 21 21 H 1.09007 * 109.47059 * 6.31970 * 1 2 3 22 22 H 1.08997 * 109.47361 * 126.31994 * 1 2 3 23 23 H 1.09002 * 109.47199 * 240.00569 * 2 1 3 24 24 H 1.09001 * 109.47071 * 207.40861 * 3 2 1 25 25 H 1.08994 * 109.47578 * 327.40960 * 3 2 1 26 26 H 1.09001 * 109.47399 * 87.41091 * 3 2 1 27 27 H 0.96993 * 119.99933 * 180.02562 * 8 7 5 28 28 H 1.08000 * 121.53277 * 0.02714 * 16 15 13 29 29 H 1.07995 * 127.31950 * 0.02562 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 3.0892 -1.5403 1.1072 6 1 3.4836 -2.0069 1.9977 7 6 3.6716 -1.7972 -0.1281 8 7 4.1464 -0.8067 -0.8496 9 14 3.7797 -3.5506 -0.7632 10 1 2.4127 -4.1177 -0.8862 11 1 4.4386 -3.5553 -2.0940 12 1 4.5731 -4.3727 0.1854 13 6 1.4141 -0.4900 2.3840 14 8 1.8793 -0.9831 3.3940 15 6 0.1906 0.3262 2.4592 16 6 -0.8142 0.1056 3.3981 17 7 -1.8393 0.8960 3.3570 18 16 -1.5944 1.9995 2.0943 19 6 -0.0632 1.3832 1.6099 20 1 -0.3633 -0.4127 0.9412 21 1 -0.3633 1.0215 -0.1131 22 1 -0.3634 -0.6086 -0.8280 23 1 1.8933 -0.5137 -0.8900 24 1 3.0212 1.4810 -0.4731 25 1 1.3448 2.0737 -0.5535 26 1 2.1173 1.8006 1.0266 27 1 4.5526 -0.9860 -1.7119 28 1 -0.7414 -0.6876 4.1275 29 1 0.5650 1.7455 0.8096 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687181063.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:08 Heat of formation + Delta-G solvation = 102.385381 kcal Electronic energy + Delta-G solvation = -15826.580441 eV Core-core repulsion = 13266.885628 eV Total energy + Delta-G solvation = -2559.694813 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51236 -37.19843 -35.88340 -33.58389 -31.29333 -29.89654 -26.66079 -25.80130 -24.41131 -21.92619 -21.03249 -18.78097 -17.18242 -16.81127 -16.06516 -15.21180 -14.62000 -14.49021 -14.18697 -13.80600 -13.59902 -12.87323 -12.38356 -12.20566 -12.05453 -11.69785 -11.37504 -11.25619 -10.87106 -10.75396 -10.53836 -10.33169 -10.21759 -10.09016 -8.83441 -8.54073 -8.44136 -8.20334 -8.02155 -7.00020 -3.70828 1.01416 1.87881 2.23288 2.57072 3.06166 3.18458 3.26222 3.94417 4.02199 4.57997 4.72068 5.07421 5.34809 5.48354 5.52652 5.67307 5.89605 5.91887 6.07335 6.18934 6.21645 6.28239 6.51776 6.76074 6.93086 7.00343 7.23718 8.01517 8.28673 9.02070 9.24235 9.92847 10.06637 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.038980 B = 0.008815 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.142698 B = 3175.522383 C = 3493.847660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.128 3.872 3 C -0.175 4.175 4 N -0.405 5.405 5 C -0.363 4.363 6 H 0.117 0.883 7 C 0.085 3.915 8 N -0.781 5.781 9 Si 0.863 3.137 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.481 3.519 14 O -0.591 6.591 15 C -0.199 4.199 16 C 0.136 3.864 17 N -0.480 5.480 18 S 0.198 5.802 19 C -0.197 4.197 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.277 0.723 28 H 0.186 0.814 29 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 4.974 -3.273 8.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.023 3.977 3 C -0.232 4.232 4 N -0.121 5.121 5 C -0.487 4.487 6 H 0.135 0.865 7 C -0.130 4.130 8 N -0.411 5.411 9 Si 0.686 3.314 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.270 3.730 14 O -0.479 6.479 15 C -0.218 4.218 16 C -0.062 4.062 17 N -0.298 5.298 18 S 0.348 5.652 19 C -0.345 4.345 20 H 0.106 0.894 21 H 0.096 0.904 22 H 0.069 0.931 23 H 0.117 0.883 24 H 0.107 0.893 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.202 0.798 29 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.196 5.975 -2.743 10.507 hybrid contribution 1.713 -1.869 -0.690 2.627 sum -6.484 4.106 -3.433 8.407 Atomic orbital electron populations 1.24049 0.97170 1.00971 1.03980 1.21097 0.91672 0.93451 0.91471 1.22445 1.03213 0.95659 1.01864 1.43750 1.26303 1.36931 1.05127 1.19360 1.12127 1.21941 0.95294 0.86510 1.25108 0.93244 0.98565 0.96128 1.70583 1.23253 1.34755 1.12459 0.86977 0.79395 0.87039 0.78033 1.19475 1.21076 1.19015 1.16647 0.85558 0.86978 0.83830 1.90612 1.67494 1.55830 1.33992 1.20632 1.00710 1.01151 0.99332 1.22783 0.88294 0.97768 0.97378 1.76484 1.26250 1.10068 1.16996 1.83759 1.14426 1.38392 1.28642 1.29249 1.03327 0.99470 1.02486 0.89355 0.90433 0.93129 0.88266 0.89326 0.92663 0.91860 0.91284 0.79750 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.46 7.76 37.16 0.29 -3.17 15 2 C 0.13 2.56 2.50 -67.93 -0.17 2.39 15 3 C -0.17 -3.06 7.99 37.16 0.30 -2.76 15 4 N -0.41 -9.77 2.55 -108.99 -0.28 -10.05 15 5 C -0.36 -9.57 9.29 -14.98 -0.14 -9.71 15 6 H 0.12 3.36 7.39 -52.49 -0.39 2.97 15 7 C 0.08 2.04 4.04 -17.45 -0.07 1.97 15 8 N -0.78 -18.33 11.64 55.50 0.65 -17.69 15 9 Si 0.86 18.42 29.69 -169.99 -5.05 13.37 15 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 13 C 0.48 11.71 6.82 -12.59 -0.09 11.62 15 14 O -0.59 -16.54 16.52 5.24 0.09 -16.45 15 15 C -0.20 -3.95 3.52 -105.94 -0.37 -4.33 15 16 C 0.14 2.53 10.96 -18.14 -0.20 2.33 15 17 N -0.48 -8.43 12.01 29.38 0.35 -8.08 15 18 S 0.20 2.97 23.65 -107.50 -2.54 0.42 15 19 C -0.20 -3.28 5.40 30.63 0.17 -3.11 15 20 H 0.09 1.65 4.12 -54.59 -0.22 1.42 15 21 H 0.08 1.11 4.78 -53.40 -0.26 0.85 15 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.10 2.11 5.91 -51.93 -0.31 1.80 15 24 H 0.09 1.70 7.43 -51.93 -0.39 1.31 15 25 H 0.05 0.75 6.91 -51.93 -0.36 0.39 15 26 H 0.06 1.16 6.31 -51.93 -0.33 0.83 15 27 H 0.28 6.00 8.31 -40.82 -0.34 5.66 15 28 H 0.19 3.24 8.06 -52.49 -0.42 2.82 15 29 H 0.23 3.46 1.75 -71.47 -0.13 3.34 15 LS Contribution 244.76 15.07 3.69 3.69 Total: -1.00 -28.40 244.76 -5.73 -34.13 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.35 Total: 5.43 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -0.29 Total: -4.78 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.72 Total: -35.81 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.09 Total: -16.45 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.05 Total: 13.37 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.54 Total: 0.42 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -28.40 -5.73 -34.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687181063.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.520 kcal (2) G-P(sol) polarization free energy of solvation -28.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds