Wall clock time and date at job start Mon Mar 30 2020 03:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21613 * 120.00251 * 359.72091 * 13 12 11 15 15 C 1.47344 * 119.99686 * 179.72403 * 13 12 11 16 16 C 1.39238 * 123.08628 * 179.97438 * 15 13 12 17 17 N 1.29510 * 116.93775 * 180.02562 * 16 15 13 18 18 S 1.69487 * 107.84397 * 359.97438 * 17 16 15 19 19 C 1.37898 * 123.08735 * 359.70624 * 15 13 12 20 20 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 22 22 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 23 23 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 24 24 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 25 25 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 26 26 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 27 27 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 28 28 H 1.08000 * 121.52836 * 0.02872 * 16 15 13 29 29 H 1.07999 * 127.31578 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1553 -3.3395 0.0038 15 6 7.8562 -5.6530 0.0088 16 6 9.2095 -5.9807 0.0140 17 7 9.5079 -7.2410 0.0180 18 16 8.0577 -8.1181 0.0158 19 6 7.0179 -6.7479 0.0144 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6807 0.8905 22 1 3.8752 -0.6795 -0.8895 23 1 3.6587 -3.1493 -0.8920 24 1 3.6579 -3.1512 0.8880 25 1 5.9150 -2.1234 0.8891 26 1 5.9149 -2.1217 -0.8909 27 1 5.4096 -4.7549 -0.0021 28 1 9.9750 -5.2190 0.0149 29 1 5.9379 -6.7455 0.0161 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687181276.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:37 Heat of formation + Delta-G solvation = -10.274606 kcal Electronic energy + Delta-G solvation = -13976.325810 eV Core-core repulsion = 11411.745693 eV Total energy + Delta-G solvation = -2564.580117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.23384 -38.14548 -35.62085 -33.50051 -32.11983 -31.04243 -27.35488 -25.81714 -23.40513 -21.77035 -20.65341 -19.69996 -18.51859 -17.35519 -16.76092 -15.64556 -15.62788 -14.92894 -14.60564 -14.24739 -13.89678 -13.70133 -13.41797 -12.74661 -12.09189 -11.98507 -11.90264 -11.17599 -11.12238 -10.94053 -10.30047 -10.18910 -10.04904 -9.84739 -9.68298 -9.27384 -9.20820 -8.93891 -8.59131 -6.09883 -4.08992 0.09403 1.01522 1.42185 1.61240 3.15406 3.16045 3.28723 3.36617 3.40294 4.24488 4.41147 4.63273 4.74484 5.04976 5.24120 5.41311 5.47742 5.57634 5.93358 6.13749 6.22484 6.36925 6.59188 6.71557 7.17203 7.30820 7.46166 7.71953 8.13103 8.45974 8.93473 9.52182 11.03223 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.057765 B = 0.003896 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.606746 B = 7185.829569 C = 7644.675565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.114 3.886 12 N -0.717 5.717 13 C 0.578 3.422 14 O -0.537 6.537 15 C -0.209 4.209 16 C 0.138 3.862 17 N -0.466 5.466 18 S 0.290 5.710 19 C -0.173 4.173 20 H 0.264 0.736 21 H 0.019 0.981 22 H 0.015 0.985 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.398 0.602 28 H 0.196 0.804 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.449 -15.027 0.051 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.367 5.367 13 C 0.362 3.638 14 O -0.416 6.416 15 C -0.230 4.230 16 C -0.060 4.060 17 N -0.285 5.285 18 S 0.442 5.558 19 C -0.323 4.323 20 H 0.073 0.927 21 H 0.038 0.962 22 H 0.033 0.967 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.233 0.767 28 H 0.213 0.787 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 15.723 -16.287 0.057 22.639 hybrid contribution -0.714 2.367 -0.024 2.472 sum 15.010 -13.921 0.033 20.471 Atomic orbital electron populations 1.69907 1.06317 1.27005 1.50871 1.25033 0.94760 0.99269 0.94434 0.86773 0.80399 0.83508 0.78605 1.20236 1.21343 1.18886 1.21080 0.89268 0.94509 1.51254 0.91016 1.19505 0.97313 0.91361 0.96740 1.21718 0.90444 1.01219 1.01787 1.21732 0.96266 0.80558 1.02308 1.46013 1.06085 1.10348 1.74260 1.17347 0.82798 0.86759 0.76904 1.90808 1.55333 1.45134 1.50279 1.20728 0.93337 0.95552 1.13420 1.22834 0.95739 0.93489 0.93966 1.76589 1.19094 1.08100 1.24684 1.84127 0.93524 1.13360 1.64745 1.27513 1.06101 0.98095 1.00612 0.92663 0.96242 0.96681 0.92051 0.92028 0.91418 0.91405 0.76728 0.78719 0.78964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 15 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 15 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.73 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 15 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 15 7 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 15 8 H 0.07 2.10 7.99 -52.49 -0.42 1.69 15 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 15 10 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 15 11 C 0.11 1.76 5.67 -4.04 -0.02 1.74 15 12 N -0.72 -9.05 5.53 -61.41 -0.34 -9.39 15 13 C 0.58 7.85 7.79 -12.56 -0.10 7.75 15 14 O -0.54 -9.21 16.66 5.27 0.09 -9.12 15 15 C -0.21 -2.23 5.86 -105.95 -0.62 -2.85 15 16 C 0.14 1.47 10.88 -18.16 -0.20 1.27 15 17 N -0.47 -5.00 12.02 29.36 0.35 -4.65 15 18 S 0.29 2.31 23.69 -107.50 -2.55 -0.24 15 19 C -0.17 -1.35 10.79 30.61 0.33 -1.02 15 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 21 H 0.02 0.44 7.20 -51.93 -0.37 0.07 15 22 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 15 23 H 0.06 1.05 8.14 -51.93 -0.42 0.62 15 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.07 1.10 8.14 -51.92 -0.42 0.68 15 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 27 H 0.40 3.83 7.05 -40.82 -0.29 3.55 15 28 H 0.20 1.90 7.92 -52.49 -0.42 1.48 15 29 H 0.19 0.92 7.20 -52.49 -0.38 0.54 15 LS Contribution 271.31 15.07 4.09 4.09 Total: -1.00 -32.60 271.31 -6.67 -39.27 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -3.13 Total: -1.56 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: -1.29 Total: -8.56 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.79 Total: -40.61 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.55 Total: -0.24 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.60 -6.67 -39.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687181276.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.998 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds