Wall clock time and date at job start Mon Mar 30 2020 03:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21613 * 120.00251 * 359.72091 * 13 12 11 15 15 C 1.47344 * 119.99686 * 179.72403 * 13 12 11 16 16 C 1.39238 * 123.08628 * 179.97438 * 15 13 12 17 17 N 1.29510 * 116.93775 * 180.02562 * 16 15 13 18 18 S 1.69487 * 107.84397 * 359.97438 * 17 16 15 19 19 C 1.37898 * 123.08735 * 359.70624 * 15 13 12 20 20 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 21 21 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 22 22 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 23 23 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 24 24 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 25 25 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 26 26 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 27 27 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 28 28 H 1.08000 * 121.52836 * 0.02872 * 16 15 13 29 29 H 1.07999 * 127.31578 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0014 12 7 6.0400 -4.0176 -0.0022 13 6 7.3651 -4.2638 0.0033 14 8 8.1553 -3.3395 0.0038 15 6 7.8562 -5.6530 0.0088 16 6 9.2095 -5.9807 0.0140 17 7 9.5079 -7.2410 0.0180 18 16 8.0577 -8.1181 0.0158 19 6 7.0179 -6.7479 0.0144 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6807 0.8905 22 1 3.8752 -0.6795 -0.8895 23 1 3.6587 -3.1493 -0.8920 24 1 3.6579 -3.1512 0.8880 25 1 5.9150 -2.1234 0.8891 26 1 5.9149 -2.1217 -0.8909 27 1 5.4096 -4.7549 -0.0021 28 1 9.9750 -5.2190 0.0149 29 1 5.9379 -6.7455 0.0161 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687181276.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:35 Heat of formation + Delta-G solvation = -33.727625 kcal Electronic energy + Delta-G solvation = -13977.342809 eV Core-core repulsion = 11411.745693 eV Total energy + Delta-G solvation = -2565.597116 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.19870 -39.03805 -36.98027 -35.20288 -33.58124 -32.24361 -28.96188 -26.66325 -24.90626 -22.83669 -22.21338 -20.64949 -19.46314 -18.80439 -18.18753 -16.80276 -16.78337 -16.21869 -15.72794 -15.71108 -14.87150 -14.77269 -14.73939 -14.27517 -13.78850 -13.61194 -12.73681 -12.70012 -12.59387 -11.97526 -11.86618 -11.76798 -11.57900 -11.31395 -10.97263 -10.92146 -10.74800 -10.19115 -9.78798 -8.28074 -6.31676 -0.60580 0.34644 0.71512 0.76216 1.38080 1.40004 1.51285 2.12603 2.19500 2.37443 3.07937 3.59911 3.83920 3.91229 4.12886 4.22868 4.40954 4.52254 4.67217 4.90909 4.92012 5.06075 5.34744 5.40102 5.51122 5.58144 5.66720 6.28711 6.49019 6.76752 7.13430 7.33218 8.88093 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.057765 B = 0.003896 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.606746 B = 7185.829569 C = 7644.675565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.014 4.014 10 C -0.100 4.100 11 C 0.126 3.874 12 N -0.707 5.707 13 C 0.581 3.419 14 O -0.580 6.580 15 C -0.234 4.234 16 C 0.134 3.866 17 N -0.499 5.499 18 S 0.339 5.661 19 C -0.151 4.151 20 H 0.265 0.735 21 H 0.021 0.979 22 H 0.020 0.980 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.415 0.585 28 H 0.193 0.807 29 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.342 -15.934 0.042 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.170 1.170 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.052 4.052 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.358 5.358 13 C 0.367 3.633 14 O -0.461 6.461 15 C -0.255 4.255 16 C -0.063 4.063 17 N -0.319 5.319 18 S 0.491 5.509 19 C -0.300 4.300 20 H 0.074 0.926 21 H 0.039 0.961 22 H 0.038 0.962 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.252 0.748 28 H 0.210 0.790 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 16.617 -17.234 0.048 23.941 hybrid contribution -1.067 2.461 -0.022 2.682 sum 15.550 -14.773 0.026 21.449 Atomic orbital electron populations 1.70055 1.08196 1.28068 1.52783 1.25984 0.95585 1.03427 0.94348 0.85715 0.79562 0.78611 0.79122 1.19350 1.21206 1.17038 1.21472 0.91932 0.93234 1.50044 0.94260 1.19481 0.94028 0.94812 0.96865 1.21487 0.91832 0.98109 1.02408 1.21372 0.94478 0.82112 1.01782 1.45779 1.06338 1.09750 1.73967 1.17655 0.82419 0.87518 0.75713 1.90784 1.56332 1.46700 1.52325 1.20439 0.93763 0.94550 1.16759 1.22829 0.95975 0.93598 0.93945 1.76468 1.21360 1.08283 1.25751 1.84016 0.91923 1.11906 1.63017 1.27956 1.07615 0.97181 0.97280 0.92582 0.96067 0.96182 0.91451 0.91465 0.92096 0.92005 0.74796 0.79044 0.75662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.53 13.96 21.45 0.30 -58.23 15 2 C 0.00 0.19 5.47 84.65 0.46 0.66 15 3 Si 0.95 43.63 27.47 68.60 1.88 45.51 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 15 6 H -0.25 -10.59 6.54 99.48 0.65 -9.94 15 7 C -0.53 -29.19 9.66 25.60 0.25 -28.95 15 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 15 9 C -0.01 -0.61 4.04 29.85 0.12 -0.49 15 10 C -0.10 -3.35 5.27 30.59 0.16 -3.19 15 11 C 0.13 3.68 5.67 86.38 0.49 4.17 15 12 N -0.71 -16.30 5.53 -466.44 -2.58 -18.88 15 13 C 0.58 14.98 7.79 86.64 0.68 15.66 15 14 O -0.58 -19.71 16.66 -4.07 -0.07 -19.78 15 15 C -0.23 -4.57 5.86 -20.72 -0.12 -4.69 15 16 C 0.13 2.74 10.88 85.28 0.93 3.67 15 17 N -0.50 -10.03 12.02 -61.01 -0.73 -10.76 15 18 S 0.34 4.44 23.69 -56.49 -1.34 3.10 15 19 C -0.15 -1.86 10.79 67.74 0.73 -1.13 15 20 H 0.27 15.31 8.31 -92.71 -0.77 14.54 15 21 H 0.02 0.92 7.20 -2.39 -0.02 0.90 15 22 H 0.02 0.86 7.57 -2.38 -0.02 0.84 15 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 24 H 0.07 2.17 8.14 -2.38 -0.02 2.15 15 25 H 0.06 1.88 8.14 -2.38 -0.02 1.86 15 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 27 H 0.41 6.66 7.05 -92.71 -0.65 6.01 15 28 H 0.19 3.81 7.92 -2.91 -0.02 3.79 15 29 H 0.23 1.09 7.20 -2.91 -0.02 1.07 15 Total: -1.00 -70.95 271.31 1.62 -69.33 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 0.46 Total: 3.99 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 3.69 Total: -14.29 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -3.01 Total: -87.86 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.07 Total: -19.78 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.51 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.34 Total: 3.10 kcal Total: -70.95 1.62 -69.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687181276.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.606 kcal (2) G-P(sol) polarization free energy of solvation -70.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds