Wall clock time and date at job start Mon Mar 30 2020 04:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47274 * 2 1 4 4 C 1.50703 * 109.47133 * 239.99933 * 2 1 3 5 5 H 1.08003 * 119.99703 * 240.00329 * 4 2 1 6 6 C 1.37872 * 120.00089 * 59.99725 * 4 2 1 7 7 N 1.31516 * 120.00111 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99874 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47115 * 269.99621 * 8 6 4 10 10 H 1.48503 * 109.47196 * 29.99877 * 8 6 4 11 11 H 1.48505 * 109.47188 * 149.99509 * 8 6 4 12 12 N 1.46507 * 109.47100 * 120.00040 * 2 1 3 13 13 C 1.46495 * 120.00172 * 59.99895 * 12 2 1 14 14 C 1.34776 * 120.00041 * 239.99938 * 12 2 1 15 15 O 1.21619 * 119.99697 * 6.77699 * 14 12 2 16 16 C 1.47337 * 120.00079 * 186.78312 * 14 12 2 17 17 C 1.39242 * 123.08305 * 190.09953 * 16 14 12 18 18 N 1.29517 * 116.93095 * 179.97438 * 17 16 14 19 19 S 1.69479 * 107.84852 * 359.97438 * 18 17 16 20 20 C 1.37894 * 123.08533 * 9.79948 * 16 14 12 21 21 H 1.08994 * 109.46985 * 60.00058 * 1 2 3 22 22 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47209 * 300.00056 * 1 2 3 24 24 H 0.96997 * 119.99805 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47579 * 95.90139 * 13 12 2 26 26 H 1.08998 * 109.47524 * 215.90590 * 13 12 2 27 27 H 1.09005 * 109.47128 * 335.90588 * 13 12 2 28 28 H 1.07993 * 121.53779 * 0.02562 * 17 16 14 29 29 H 1.07997 * 127.31907 * 0.02562 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 2.1380 -0.8591 -3.5565 8 14 0.6258 1.2797 -2.6541 9 1 -0.8021 0.8743 -2.6993 10 1 0.8491 2.1772 -1.4923 11 1 0.9772 1.9953 -3.9071 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0834 15 8 2.9859 1.1585 1.9572 16 6 3.4069 -0.7664 3.2060 17 6 4.0452 -0.1312 4.2681 18 7 4.5428 -0.8902 5.1920 19 16 4.2272 -2.5003 4.7675 20 6 3.3966 -2.1418 3.3043 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.9040 -0.5276 -4.4375 25 1 2.4667 -2.7353 1.0645 26 1 1.5211 -2.2601 2.4956 27 1 0.7421 -2.3278 0.8966 28 1 4.1211 0.9449 4.3195 29 1 2.9609 -2.8446 2.6097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687183138.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:18 Heat of formation + Delta-G solvation = 36.365101 kcal Electronic energy + Delta-G solvation = -15128.600507 eV Core-core repulsion = 12566.042840 eV Total energy + Delta-G solvation = -2562.557667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 5.90 seconds Orbital eigenvalues (eV) -40.02756 -37.77869 -35.69678 -33.22819 -31.64830 -29.77989 -27.09825 -25.32740 -24.95245 -22.69407 -20.25519 -19.26525 -17.51876 -16.96283 -16.15450 -15.71195 -15.17827 -14.96549 -14.16859 -13.71448 -13.65850 -13.02146 -12.92947 -12.53210 -12.29366 -11.92456 -11.68223 -11.27323 -11.17310 -10.79194 -10.66749 -10.20574 -9.77393 -9.68670 -9.45252 -9.23884 -8.79055 -8.70207 -7.88021 -6.21300 -4.23108 0.48556 1.39743 1.76157 2.01544 3.19113 3.33392 3.35461 3.62251 3.64509 4.29456 4.65542 4.94126 5.06032 5.12906 5.36054 5.50780 5.73852 5.76193 6.00313 6.16132 6.24841 6.37664 6.48551 6.76229 7.02329 7.20994 7.52802 8.02635 8.36331 8.69582 8.79643 9.38987 10.91185 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.045696 B = 0.006569 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.595479 B = 4261.111625 C = 4468.636406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.230 3.770 3 H 0.065 0.935 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.293 1.293 12 N -0.576 5.576 13 C 0.071 3.929 14 C 0.574 3.426 15 O -0.546 6.546 16 C -0.203 4.203 17 C 0.138 3.862 18 N -0.470 5.470 19 S 0.257 5.743 20 C -0.187 4.187 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.035 0.965 24 H 0.267 0.733 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.194 0.806 29 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 -4.576 13.334 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.129 3.871 3 H 0.083 0.917 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.305 5.305 13 C -0.072 4.072 14 C 0.359 3.641 15 O -0.426 6.426 16 C -0.224 4.224 17 C -0.061 4.061 18 N -0.288 5.288 19 S 0.409 5.591 20 C -0.335 4.335 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.210 0.790 29 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.348 -4.943 14.800 15.608 hybrid contribution -1.352 1.562 -1.827 2.758 sum -1.003 -3.381 12.973 13.444 Atomic orbital electron populations 1.22466 0.98876 1.01146 0.99510 1.19377 0.90206 0.95257 0.82286 0.91689 1.21128 1.33010 1.14404 0.88400 0.90312 1.24852 0.95605 0.96578 0.95574 1.69866 1.44973 1.40147 0.98022 0.86923 0.80414 0.83805 0.77632 1.20330 1.18683 1.22064 1.47708 1.48526 1.11687 1.22609 1.22205 1.01909 0.83173 0.99961 1.17324 0.79158 0.86406 0.81232 1.90751 1.62308 1.14364 1.75194 1.20822 1.08423 0.92652 1.00514 1.22834 0.92240 1.02649 0.88329 1.76540 1.25559 0.99737 1.26957 1.83981 1.48181 1.13130 1.13813 1.28735 1.01208 0.99972 1.03626 0.92982 0.92482 0.94604 0.92329 0.92221 0.91691 0.89903 0.78959 0.76874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.66 37.16 0.32 -3.02 15 2 C 0.23 5.36 2.21 -69.08 -0.15 5.20 15 3 H 0.07 1.69 5.98 -51.93 -0.31 1.38 15 4 C -0.53 -14.17 8.95 -34.44 -0.31 -14.48 15 5 H 0.08 2.25 7.89 -52.48 -0.41 1.83 15 6 C 0.08 2.14 5.45 -17.82 -0.10 2.04 15 7 N -0.89 -26.24 13.96 55.43 0.77 -25.47 15 8 Si 0.88 21.27 24.37 -169.99 -4.14 17.12 15 9 H -0.28 -6.36 6.87 56.52 0.39 -5.97 15 10 H -0.26 -6.24 6.53 56.52 0.37 -5.87 15 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 12 N -0.58 -11.31 2.75 -176.56 -0.49 -11.80 15 13 C 0.07 1.05 7.78 59.84 0.47 1.51 15 14 C 0.57 11.26 7.62 -12.56 -0.10 11.17 15 15 O -0.55 -12.55 16.05 5.26 0.08 -12.46 15 16 C -0.20 -3.14 5.71 -105.95 -0.61 -3.75 15 17 C 0.14 2.01 10.88 -18.15 -0.20 1.81 15 18 N -0.47 -6.59 12.02 29.37 0.35 -6.23 15 19 S 0.26 2.91 23.69 -107.50 -2.55 0.36 15 20 C -0.19 -2.30 9.08 30.61 0.28 -2.02 15 21 H 0.05 1.13 3.27 -51.93 -0.17 0.96 15 22 H 0.06 1.08 6.67 -51.93 -0.35 0.73 15 23 H 0.03 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.06 0.83 7.02 -51.93 -0.36 0.47 15 26 H 0.06 0.74 5.52 -51.93 -0.29 0.46 15 27 H 0.08 1.22 6.44 -51.93 -0.33 0.89 15 28 H 0.19 2.60 7.95 -52.49 -0.42 2.18 15 29 H 0.22 2.19 4.13 -52.49 -0.22 1.97 15 LS Contribution 251.01 15.07 3.78 3.78 Total: -1.00 -31.61 251.01 -5.04 -36.65 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -2.46 Total: -0.42 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.39 Total: -1.54 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.64 Total: -43.50 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.14 Total: 17.12 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.55 Total: 0.36 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.61 -5.04 -36.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183138.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.014 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.90 seconds