Wall clock time and date at job start Mon Mar 30 2020 04:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47274 * 2 1 4 4 C 1.50703 * 109.47133 * 239.99933 * 2 1 3 5 5 H 1.08003 * 119.99703 * 240.00329 * 4 2 1 6 6 C 1.37872 * 120.00089 * 59.99725 * 4 2 1 7 7 N 1.31516 * 120.00111 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99874 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47115 * 269.99621 * 8 6 4 10 10 H 1.48503 * 109.47196 * 29.99877 * 8 6 4 11 11 H 1.48505 * 109.47188 * 149.99509 * 8 6 4 12 12 N 1.46507 * 109.47100 * 120.00040 * 2 1 3 13 13 C 1.46495 * 120.00172 * 59.99895 * 12 2 1 14 14 C 1.34776 * 120.00041 * 239.99938 * 12 2 1 15 15 O 1.21619 * 119.99697 * 6.77699 * 14 12 2 16 16 C 1.47337 * 120.00079 * 186.78312 * 14 12 2 17 17 C 1.39242 * 123.08305 * 190.09953 * 16 14 12 18 18 N 1.29517 * 116.93095 * 179.97438 * 17 16 14 19 19 S 1.69479 * 107.84852 * 359.97438 * 18 17 16 20 20 C 1.37894 * 123.08533 * 9.79948 * 16 14 12 21 21 H 1.08994 * 109.46985 * 60.00058 * 1 2 3 22 22 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47209 * 300.00056 * 1 2 3 24 24 H 0.96997 * 119.99805 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47579 * 95.90139 * 13 12 2 26 26 H 1.08998 * 109.47524 * 215.90590 * 13 12 2 27 27 H 1.09005 * 109.47128 * 335.90588 * 13 12 2 28 28 H 1.07993 * 121.53779 * 0.02562 * 17 16 14 29 29 H 1.07997 * 127.31907 * 0.02562 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 2.1380 -0.8591 -3.5565 8 14 0.6258 1.2797 -2.6541 9 1 -0.8021 0.8743 -2.6993 10 1 0.8491 2.1772 -1.4923 11 1 0.9772 1.9953 -3.9071 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0834 15 8 2.9859 1.1585 1.9572 16 6 3.4069 -0.7664 3.2060 17 6 4.0452 -0.1312 4.2681 18 7 4.5428 -0.8902 5.1920 19 16 4.2272 -2.5003 4.7675 20 6 3.3966 -2.1418 3.3043 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.9040 -0.5276 -4.4375 25 1 2.4667 -2.7353 1.0645 26 1 1.5211 -2.2601 2.4956 27 1 0.7421 -2.3278 0.8966 28 1 4.1211 0.9449 4.3195 29 1 2.9609 -2.8446 2.6097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687183138.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:15 Heat of formation + Delta-G solvation = 13.532989 kcal Electronic energy + Delta-G solvation = -15129.590582 eV Core-core repulsion = 12566.042840 eV Total energy + Delta-G solvation = -2563.547742 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39518 -39.04676 -37.32502 -35.00453 -33.26738 -31.25376 -28.39054 -27.18602 -26.21905 -24.19589 -21.61840 -20.68679 -18.87727 -18.65996 -17.65960 -17.32894 -16.67533 -16.36329 -15.63938 -14.98824 -14.87872 -14.79383 -14.38318 -14.10438 -13.87397 -13.59918 -13.04610 -12.98053 -12.60572 -12.24895 -12.04514 -11.78227 -11.57581 -11.35589 -10.86702 -10.79819 -10.71178 -9.84711 -9.42879 -8.34800 -6.39620 -0.57617 0.38869 0.73941 0.80966 1.27491 1.37761 1.45753 2.17311 2.24643 2.28387 3.00833 3.62409 3.68893 3.98429 4.23903 4.42442 4.45818 4.54588 4.57818 4.66993 4.69797 4.88786 5.06760 5.27118 5.44788 5.47072 5.67054 6.18987 6.59885 6.65509 7.15477 7.30306 8.80790 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.045696 B = 0.006569 C = 0.006264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.595479 B = 4261.111625 C = 4468.636406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.232 3.768 3 H 0.033 0.967 4 C -0.526 4.526 5 H 0.050 0.950 6 C 0.026 3.974 7 N -0.937 5.937 8 Si 0.938 3.062 9 H -0.253 1.253 10 H -0.262 1.262 11 H -0.298 1.298 12 N -0.584 5.584 13 C 0.063 3.937 14 C 0.568 3.432 15 O -0.593 6.593 16 C -0.230 4.230 17 C 0.135 3.865 18 N -0.495 5.495 19 S 0.336 5.664 20 C -0.172 4.172 21 H 0.042 0.958 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.268 0.732 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.191 0.809 29 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.629 -5.874 15.056 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.129 3.871 3 H 0.051 0.949 4 C -0.564 4.564 5 H 0.068 0.932 6 C -0.173 4.173 7 N -0.577 5.577 8 Si 0.765 3.235 9 H -0.178 1.178 10 H -0.187 1.187 11 H -0.225 1.225 12 N -0.313 5.313 13 C -0.079 4.079 14 C 0.356 3.644 15 O -0.476 6.476 16 C -0.251 4.251 17 C -0.062 4.062 18 N -0.315 5.315 19 S 0.488 5.512 20 C -0.321 4.321 21 H 0.061 0.939 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.207 0.793 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.580 -6.277 16.554 17.714 hybrid contribution -0.950 1.792 -2.257 3.034 sum -1.529 -4.485 14.298 15.063 Atomic orbital electron populations 1.22330 0.96380 1.02570 1.00008 1.19042 0.92057 0.93498 0.82546 0.94910 1.21334 1.31866 1.13293 0.89945 0.93179 1.25590 0.97075 0.99296 0.95360 1.69988 1.46985 1.42085 0.98605 0.86031 0.80015 0.80373 0.77091 1.17831 1.18675 1.22540 1.47725 1.48625 1.13484 1.21477 1.22540 1.02255 0.80478 1.02635 1.17878 0.78508 0.86133 0.81896 1.90712 1.63840 1.16526 1.76543 1.20453 1.10891 0.93669 1.00093 1.22734 0.92339 1.02874 0.88271 1.76400 1.26126 1.01626 1.27335 1.83790 1.45549 1.10412 1.11401 1.29030 0.99728 0.98987 1.04326 0.93905 0.90630 0.92568 0.92245 0.91336 0.87797 0.89750 0.79261 0.74721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.11 8.66 71.98 0.62 -5.49 15 2 C 0.23 10.74 2.21 44.24 0.10 10.84 15 3 H 0.03 1.74 5.98 -2.39 -0.01 1.73 15 4 C -0.53 -28.39 8.95 25.60 0.23 -28.16 15 5 H 0.05 2.92 7.89 -2.91 -0.02 2.90 15 6 C 0.03 1.45 5.45 84.65 0.46 1.91 15 7 N -0.94 -56.07 13.96 21.45 0.30 -55.77 15 8 Si 0.94 43.93 24.37 68.60 1.67 45.60 15 9 H -0.25 -10.83 6.87 99.48 0.68 -10.14 15 10 H -0.26 -12.18 6.53 99.48 0.65 -11.53 15 11 H -0.30 -14.04 7.11 99.48 0.71 -13.33 15 12 N -0.58 -22.47 2.75 -830.76 -2.29 -24.76 15 13 C 0.06 1.69 7.78 127.77 0.99 2.68 15 14 C 0.57 22.22 7.62 86.64 0.66 22.88 15 15 O -0.59 -27.97 16.05 -4.09 -0.07 -28.04 15 16 C -0.23 -6.78 5.71 -20.72 -0.12 -6.90 15 17 C 0.14 3.79 10.88 85.28 0.93 4.72 15 18 N -0.50 -12.85 12.02 -61.00 -0.73 -13.58 15 19 S 0.34 6.37 23.69 -56.49 -1.34 5.03 15 20 C -0.17 -3.67 9.08 67.74 0.61 -3.06 15 21 H 0.04 1.76 3.27 -2.39 -0.01 1.75 15 22 H 0.07 2.66 6.67 -2.39 -0.02 2.65 15 23 H 0.06 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.27 15.11 8.31 -92.71 -0.77 14.33 15 25 H 0.07 1.73 7.02 -2.39 -0.02 1.72 15 26 H 0.10 1.97 5.52 -2.39 -0.01 1.96 15 27 H 0.08 2.26 6.44 -2.38 -0.02 2.25 15 28 H 0.19 5.21 7.95 -2.91 -0.02 5.18 15 29 H 0.24 3.84 4.13 -2.91 -0.01 3.83 15 Total: -1.00 -70.00 251.01 3.15 -66.85 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.11 Total: 5.24 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 4.49 Total: -0.58 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -2.72 Total: -94.12 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.07 Total: -28.04 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.67 Total: 45.60 kcal Atomic # 16 Polarization: 6.37 SS G_CDS: -1.34 Total: 5.03 kcal Total: -70.00 3.15 -66.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183138.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.385 kcal (2) G-P(sol) polarization free energy of solvation -69.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds