Wall clock time and date at job start Mon Mar 30 2020 04:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 N 1.46508 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.36979 * 119.99642 * 95.02519 * 4 3 2 6 6 H 1.07997 * 120.00282 * 236.00109 * 5 4 3 7 7 C 1.38972 * 119.99749 * 55.73143 * 5 4 3 8 8 N 1.31411 * 120.00163 * 5.21490 * 7 5 4 9 9 Si 1.86800 * 120.00148 * 185.21394 * 7 5 4 10 10 H 1.48506 * 109.47176 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47425 * 120.00012 * 9 7 5 12 12 H 1.48503 * 109.47243 * 239.99873 * 9 7 5 13 13 C 1.34769 * 119.99982 * 275.03103 * 4 3 2 14 14 O 1.21644 * 120.00403 * 357.50024 * 13 4 3 15 15 C 1.47279 * 119.99873 * 177.49889 * 13 4 3 16 16 C 1.39276 * 123.09530 * 188.73893 * 15 13 4 17 17 N 1.29503 * 116.93052 * 180.02562 * 16 15 13 18 18 S 1.69485 * 107.86372 * 0.02562 * 17 16 15 19 19 C 1.37961 * 123.09522 * 8.44699 * 15 13 4 20 20 H 1.08991 * 109.47553 * 60.00117 * 1 2 3 21 21 H 1.09007 * 109.47079 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46819 * 299.99415 * 1 2 3 23 23 H 1.09004 * 109.47286 * 240.00025 * 2 1 3 24 24 H 1.09001 * 109.47158 * 120.00238 * 2 1 3 25 25 H 1.09000 * 109.46837 * 60.00596 * 3 2 1 26 26 H 1.09001 * 109.47339 * 300.00127 * 3 2 1 27 27 H 0.97007 * 120.00469 * 179.97438 * 8 7 5 28 28 H 1.07991 * 121.53138 * 0.02562 * 16 15 13 29 29 H 1.08000 * 127.31262 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1904 1.5463 -1.1809 6 1 4.9134 0.7919 -1.4538 7 6 3.9511 2.6193 -2.0309 8 7 3.1447 3.5870 -1.6567 9 14 4.7759 2.6862 -3.7057 10 1 5.6302 1.4848 -3.8850 11 1 3.7384 2.7194 -4.7676 12 1 5.6154 3.9078 -3.7956 13 6 4.1784 1.3404 1.1636 14 8 3.5707 1.2939 2.2163 15 6 5.6501 1.2849 1.1599 16 6 6.4034 1.0036 2.2971 17 7 7.6908 0.9857 2.1582 18 16 8.0438 1.3334 0.5374 19 6 6.4093 1.5010 0.0284 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9562 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 2.9780 4.3363 -2.2499 28 1 5.9354 0.8094 3.2507 29 1 6.0530 1.7295 -0.9652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687183459.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:10 Heat of formation + Delta-G solvation = 7.444923 kcal Electronic energy + Delta-G solvation = -15271.256322 eV Core-core repulsion = 12707.444581 eV Total energy + Delta-G solvation = -2563.811740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26639 -37.17356 -35.15098 -33.19079 -31.59311 -30.29744 -26.04276 -25.46636 -24.04243 -21.46097 -20.20379 -19.12341 -18.13037 -16.45839 -15.64562 -14.88665 -14.67315 -14.26823 -14.08708 -13.75851 -13.16614 -12.80466 -12.55067 -12.33851 -11.73057 -11.55086 -11.32159 -11.17454 -10.94948 -10.76952 -10.46410 -10.35406 -10.21344 -9.84733 -9.16691 -9.00358 -8.65573 -8.15519 -7.43700 -6.58936 -4.48960 1.27081 2.13275 2.40895 2.67286 2.96515 3.05231 3.07068 3.85004 4.36458 4.63104 4.76843 5.50554 5.70627 5.73957 5.88229 5.98816 6.17785 6.32976 6.40672 6.47071 6.56807 6.63215 6.71911 6.98792 7.09905 7.19002 7.25403 7.90808 8.10820 8.78236 9.31081 9.76775 10.41976 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.011863 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.005840 B = 2359.768059 C = 3596.824771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.129 3.871 4 N -0.432 5.432 5 C -0.351 4.351 6 H 0.093 0.907 7 C 0.052 3.948 8 N -0.846 5.846 9 Si 0.904 3.096 10 H -0.261 1.261 11 H -0.273 1.273 12 H -0.274 1.274 13 C 0.548 3.452 14 O -0.599 6.599 15 C -0.200 4.200 16 C 0.133 3.867 17 N -0.483 5.483 18 S 0.181 5.819 19 C -0.137 4.137 20 H 0.051 0.949 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.275 0.725 28 H 0.185 0.815 29 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.978 -3.203 -2.052 4.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.006 3.994 4 N -0.149 5.149 5 C -0.480 4.480 6 H 0.110 0.890 7 C -0.158 4.158 8 N -0.479 5.479 9 Si 0.729 3.271 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.199 1.199 13 C 0.335 3.665 14 O -0.485 6.485 15 C -0.219 4.219 16 C -0.066 4.066 17 N -0.301 5.301 18 S 0.333 5.667 19 C -0.285 4.285 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.201 0.799 29 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 3.802 -3.132 -1.475 5.142 hybrid contribution -1.578 0.281 -0.881 1.830 sum 2.223 -2.851 -2.356 4.315 Atomic orbital electron populations 1.21658 0.96440 1.00567 1.01454 1.21875 0.94870 0.99293 1.01484 1.21291 0.81410 0.94216 1.02528 1.43084 1.04479 1.62942 1.04388 1.19432 1.23908 1.07844 0.96834 0.88969 1.25709 0.96087 0.94400 0.99582 1.69859 1.32958 1.08527 1.36546 0.86222 0.79772 0.79172 0.81967 1.18486 1.19852 1.19887 1.17702 0.84949 0.79588 0.84230 1.90629 1.69556 1.56831 1.31513 1.20649 0.97525 1.11440 0.92314 1.22846 0.88729 0.94716 1.00356 1.76458 1.17433 1.25838 1.10337 1.83858 1.12256 1.65591 1.04977 1.29699 0.95442 0.97032 1.06305 0.92982 0.93543 0.93041 0.92279 0.92674 0.92555 0.89400 0.91494 0.79867 0.75373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.91 37.16 0.37 -1.89 15 2 C -0.14 -2.63 6.22 -26.73 -0.17 -2.79 15 3 C 0.13 2.91 4.87 -4.04 -0.02 2.89 15 4 N -0.43 -10.35 2.39 -116.07 -0.28 -10.63 15 5 C -0.35 -8.07 5.97 -14.98 -0.09 -8.16 15 6 H 0.09 2.02 6.04 -52.49 -0.32 1.70 15 7 C 0.05 1.20 5.07 -17.46 -0.09 1.11 15 8 N -0.85 -20.87 12.00 55.50 0.67 -20.20 15 9 Si 0.90 17.30 29.27 -169.99 -4.98 12.33 15 10 H -0.26 -4.76 7.11 56.52 0.40 -4.36 15 11 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 12 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 13 C 0.55 13.36 7.58 -12.59 -0.10 13.26 15 14 O -0.60 -15.66 16.33 5.24 0.09 -15.58 15 15 C -0.20 -4.32 5.82 -105.94 -0.62 -4.93 15 16 C 0.13 2.63 10.88 -18.15 -0.20 2.43 15 17 N -0.48 -9.22 12.01 29.38 0.35 -8.87 15 18 S 0.18 3.14 23.69 -107.50 -2.55 0.60 15 19 C -0.14 -2.69 9.49 30.63 0.29 -2.40 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 24 H 0.05 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.06 1.34 7.54 -51.93 -0.39 0.95 15 26 H 0.09 2.06 6.50 -51.93 -0.34 1.72 15 27 H 0.27 6.37 8.31 -40.82 -0.34 6.03 15 28 H 0.18 3.35 7.94 -52.49 -0.42 2.93 15 29 H 0.23 4.56 4.08 -52.49 -0.21 4.34 15 LS Contribution 263.95 15.07 3.98 3.98 Total: -1.00 -26.72 263.95 -6.26 -32.98 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -2.93 Total: 5.88 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.61 Total: -0.49 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.74 Total: -39.70 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.58 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -4.98 Total: 12.33 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.55 Total: 0.60 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.72 -6.26 -32.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183459.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.425 kcal (2) G-P(sol) polarization free energy of solvation -26.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds