Wall clock time and date at job start Mon Mar 30 2020 04:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47040 * 2 1 4 4 N 1.46508 * 109.47162 * 179.97438 * 3 2 1 5 5 C 1.36979 * 119.99642 * 95.02519 * 4 3 2 6 6 H 1.07997 * 120.00282 * 236.00109 * 5 4 3 7 7 C 1.38972 * 119.99749 * 55.73143 * 5 4 3 8 8 N 1.31411 * 120.00163 * 5.21490 * 7 5 4 9 9 Si 1.86800 * 120.00148 * 185.21394 * 7 5 4 10 10 H 1.48506 * 109.47176 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47425 * 120.00012 * 9 7 5 12 12 H 1.48503 * 109.47243 * 239.99873 * 9 7 5 13 13 C 1.34769 * 119.99982 * 275.03103 * 4 3 2 14 14 O 1.21644 * 120.00403 * 357.50024 * 13 4 3 15 15 C 1.47279 * 119.99873 * 177.49889 * 13 4 3 16 16 C 1.39276 * 123.09530 * 188.73893 * 15 13 4 17 17 N 1.29503 * 116.93052 * 180.02562 * 16 15 13 18 18 S 1.69485 * 107.86372 * 0.02562 * 17 16 15 19 19 C 1.37961 * 123.09522 * 8.44699 * 15 13 4 20 20 H 1.08991 * 109.47553 * 60.00117 * 1 2 3 21 21 H 1.09007 * 109.47079 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46819 * 299.99415 * 1 2 3 23 23 H 1.09004 * 109.47286 * 240.00025 * 2 1 3 24 24 H 1.09001 * 109.47158 * 120.00238 * 2 1 3 25 25 H 1.09000 * 109.46837 * 60.00596 * 3 2 1 26 26 H 1.09001 * 109.47339 * 300.00127 * 3 2 1 27 27 H 0.97007 * 120.00469 * 179.97438 * 8 7 5 28 28 H 1.07991 * 121.53138 * 0.02562 * 16 15 13 29 29 H 1.08000 * 127.31262 * 359.97438 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1904 1.5463 -1.1809 6 1 4.9134 0.7919 -1.4538 7 6 3.9511 2.6193 -2.0309 8 7 3.1447 3.5870 -1.6567 9 14 4.7759 2.6862 -3.7057 10 1 5.6302 1.4848 -3.8850 11 1 3.7384 2.7194 -4.7676 12 1 5.6154 3.9078 -3.7956 13 6 4.1784 1.3404 1.1636 14 8 3.5707 1.2939 2.2163 15 6 5.6501 1.2849 1.1599 16 6 6.4034 1.0036 2.2971 17 7 7.6908 0.9857 2.1582 18 16 8.0438 1.3334 0.5374 19 6 6.4093 1.5010 0.0284 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9562 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 2.9780 4.3363 -2.2499 28 1 5.9354 0.8094 3.2507 29 1 6.0530 1.7295 -0.9652 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687183459.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:10 Heat of formation + Delta-G solvation = -7.920479 kcal Electronic energy + Delta-G solvation = -15271.922615 eV Core-core repulsion = 12707.444581 eV Total energy + Delta-G solvation = -2564.478034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01358 -38.81509 -36.99186 -34.79687 -33.35390 -31.88187 -27.74906 -27.14606 -25.66544 -23.05750 -21.87766 -20.83873 -19.81631 -18.06029 -17.40128 -16.60315 -16.37730 -15.85504 -15.80597 -15.29883 -14.75111 -14.46487 -14.14119 -13.93061 -13.33805 -13.23669 -12.89273 -12.72378 -12.48364 -12.30218 -11.98445 -11.92533 -11.76955 -11.50875 -10.93253 -10.56752 -10.47768 -9.68038 -9.25143 -8.34642 -6.31406 -0.30297 0.61394 0.90134 1.02667 1.46361 1.49701 1.60914 2.23947 2.57360 2.91017 3.00857 3.95714 4.15853 4.26550 4.36105 4.41733 4.58734 4.78281 4.81250 4.94288 5.01652 5.09787 5.21571 5.33844 5.35583 5.51304 5.63134 6.11569 6.31040 6.99445 7.47417 7.94757 8.68203 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.011863 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.005840 B = 2359.768059 C = 3596.824771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.130 3.870 4 N -0.441 5.441 5 C -0.360 4.360 6 H 0.105 0.895 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.969 3.031 10 H -0.241 1.241 11 H -0.277 1.277 12 H -0.274 1.274 13 C 0.532 3.468 14 O -0.631 6.631 15 C -0.225 4.225 16 C 0.132 3.868 17 N -0.495 5.495 18 S 0.266 5.734 19 C -0.143 4.143 20 H 0.058 0.942 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.076 0.924 27 H 0.276 0.724 28 H 0.190 0.810 29 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 -3.909 -3.394 6.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.007 3.993 4 N -0.157 5.157 5 C -0.489 4.489 6 H 0.122 0.878 7 C -0.191 4.191 8 N -0.521 5.521 9 Si 0.790 3.210 10 H -0.164 1.164 11 H -0.202 1.202 12 H -0.199 1.199 13 C 0.321 3.679 14 O -0.520 6.520 15 C -0.245 4.245 16 C -0.067 4.067 17 N -0.314 5.314 18 S 0.418 5.582 19 C -0.291 4.291 20 H 0.077 0.923 21 H 0.091 0.909 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.207 0.793 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.224 -3.855 -2.828 7.082 hybrid contribution -1.926 0.514 -0.462 2.046 sum 3.298 -3.341 -3.291 5.733 Atomic orbital electron populations 1.21617 0.93599 1.02399 1.01814 1.21761 0.97318 0.96600 1.00789 1.21269 0.81305 0.96069 1.00650 1.43355 1.05026 1.62485 1.04845 1.19766 1.24228 1.08421 0.96465 0.87755 1.26491 0.96251 0.93613 1.02794 1.69980 1.34654 1.09372 1.38044 0.85235 0.78829 0.79716 0.77174 1.16409 1.20200 1.19898 1.18173 0.86356 0.79421 0.83936 1.90584 1.70561 1.58414 1.32412 1.20568 0.96263 1.13804 0.93850 1.22779 0.88742 0.94905 1.00236 1.76342 1.16940 1.25955 1.12136 1.83549 1.08674 1.63170 1.02801 1.29573 0.97474 0.96189 1.05876 0.92284 0.90935 0.93057 0.92058 0.94068 0.94890 0.90579 0.91427 0.79321 0.75500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.91 71.98 0.71 -3.46 15 2 C -0.13 -4.87 6.22 30.59 0.19 -4.68 15 3 C 0.13 6.06 4.87 86.38 0.42 6.48 15 4 N -0.44 -21.52 2.39 -639.39 -1.53 -23.05 15 5 C -0.36 -16.47 5.97 84.07 0.50 -15.97 15 6 H 0.11 4.43 6.04 -2.91 -0.02 4.41 15 7 C 0.01 0.67 5.07 84.93 0.43 1.10 15 8 N -0.89 -44.23 12.00 21.67 0.26 -43.97 15 9 Si 0.97 34.33 29.27 68.60 2.01 36.33 15 10 H -0.24 -7.72 7.11 99.48 0.71 -7.01 15 11 H -0.28 -9.92 7.11 99.48 0.71 -9.22 15 12 H -0.27 -9.67 7.11 99.48 0.71 -8.96 15 13 C 0.53 26.54 7.58 86.62 0.66 27.20 15 14 O -0.63 -34.12 16.33 -4.17 -0.07 -34.19 15 15 C -0.23 -9.66 5.82 -20.72 -0.12 -9.78 15 16 C 0.13 5.11 10.88 85.29 0.93 6.04 15 17 N -0.49 -17.88 12.01 -60.96 -0.73 -18.62 15 18 S 0.27 8.41 23.69 -56.49 -1.34 7.07 15 19 C -0.14 -5.39 9.49 67.75 0.64 -4.74 15 20 H 0.06 1.71 8.14 -2.39 -0.02 1.70 15 21 H 0.07 1.84 8.14 -2.38 -0.02 1.82 15 22 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 23 H 0.06 2.31 8.14 -2.38 -0.02 2.29 15 24 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 25 H 0.03 1.64 7.54 -2.39 -0.02 1.62 15 26 H 0.08 3.68 6.50 -2.39 -0.02 3.66 15 27 H 0.28 12.94 8.31 -92.70 -0.77 12.17 15 28 H 0.19 6.91 7.94 -2.92 -0.02 6.89 15 29 H 0.23 8.66 4.08 -2.91 -0.01 8.65 15 Total: -1.00 -57.14 263.95 4.13 -53.01 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.17 Total: 21.22 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 4.36 Total: 2.19 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.00 Total: -85.63 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.07 Total: -34.19 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.01 Total: 36.33 kcal Atomic # 16 Polarization: 8.41 SS G_CDS: -1.34 Total: 7.07 kcal Total: -57.14 4.13 -53.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183459.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.091 kcal (2) G-P(sol) polarization free energy of solvation -57.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds