Wall clock time and date at job start Mon Mar 30 2020 04:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47260 * 2 1 4 4 C 1.46505 * 120.00126 * 80.96303 * 3 2 1 5 5 C 1.50698 * 109.47184 * 90.00022 * 4 3 2 6 6 H 1.07999 * 119.99897 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00086 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99851 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47495 * 89.99642 * 9 7 5 11 11 H 1.48507 * 109.46921 * 209.99868 * 9 7 5 12 12 H 1.48507 * 109.47208 * 329.99765 * 9 7 5 13 13 C 1.34780 * 119.99965 * 261.24252 * 3 2 1 14 14 O 1.21608 * 119.99902 * 183.56355 * 13 3 2 15 15 C 1.47337 * 120.00002 * 3.55636 * 13 3 2 16 16 C 1.39239 * 123.08938 * 202.96906 * 15 13 3 17 17 N 1.29512 * 116.93753 * 179.97438 * 16 15 13 18 18 S 1.69481 * 107.84702 * 0.02562 * 17 16 15 19 19 C 1.37902 * 123.08726 * 22.67518 * 15 13 3 20 20 H 1.09001 * 109.47299 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47288 * 299.99856 * 1 2 3 22 22 H 1.09002 * 109.47216 * 59.99972 * 1 2 3 23 23 H 1.09002 * 109.47288 * 240.00144 * 2 1 3 24 24 H 1.09007 * 109.47218 * 119.99535 * 2 1 3 25 25 H 1.08997 * 109.46789 * 210.00724 * 4 3 2 26 26 H 1.08997 * 109.46522 * 330.00185 * 4 3 2 27 27 H 0.96997 * 119.99996 * 180.02562 * 8 7 5 28 28 H 1.07997 * 121.52759 * 0.02562 * 16 15 13 29 29 H 1.08002 * 127.31450 * 359.97284 * 19 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0747 2.1383 1.2530 5 6 3.4169 1.9302 1.9058 6 1 4.1544 1.2976 1.4343 7 6 3.7037 2.5482 3.1045 8 7 4.8749 2.3661 3.6744 9 14 2.4283 3.6429 3.9196 10 1 1.5829 2.8267 4.8274 11 1 3.1134 4.7035 4.7014 12 1 1.5749 4.2689 2.8779 13 6 2.4105 1.9574 -1.1536 14 8 2.8765 3.0806 -1.1446 15 6 2.2749 1.2262 -2.4255 16 6 3.0402 1.5133 -3.5528 17 7 2.8226 0.7949 -4.6082 18 16 1.6026 -0.3206 -4.2348 19 6 1.3825 0.1907 -2.6072 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 1.9329 3.1985 1.0435 26 1 1.2874 1.7918 1.9224 27 1 5.0765 2.8006 4.5179 28 1 3.7816 2.2985 -3.5470 29 1 0.6913 -0.2127 -1.8819 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687183482.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:28 Heat of formation + Delta-G solvation = 29.795753 kcal Electronic energy + Delta-G solvation = -15070.782954 eV Core-core repulsion = 12507.940418 eV Total energy + Delta-G solvation = -2562.842535 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.06195 -37.66752 -35.77265 -32.97772 -31.48849 -30.35754 -27.89904 -25.33393 -23.15563 -23.06003 -20.68590 -19.26344 -17.57574 -16.93819 -16.57435 -15.67092 -14.98757 -14.71408 -14.25059 -14.12822 -13.54361 -13.16673 -12.56040 -12.43401 -12.28537 -11.94865 -11.72680 -11.34579 -11.14351 -10.94473 -10.75319 -10.57986 -10.14958 -9.66869 -9.56951 -9.21471 -8.76380 -8.62607 -7.84924 -6.11623 -4.10942 0.47572 1.38779 1.76120 2.07606 3.23942 3.32521 3.36172 3.53241 3.78912 4.36510 4.60805 4.87485 5.04978 5.09151 5.21706 5.33494 5.46750 5.52442 5.74358 5.78372 6.03178 6.26628 6.45155 6.63275 6.90063 7.21620 7.55949 8.09457 8.41911 8.79944 8.92508 9.47819 11.01723 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.039997 B = 0.006755 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.877700 B = 4143.998630 C = 4459.976424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 N -0.580 5.580 4 C 0.218 3.782 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.572 3.428 14 O -0.529 6.529 15 C -0.198 4.198 16 C 0.138 3.862 17 N -0.467 5.467 18 S 0.255 5.745 19 C -0.195 4.195 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.043 0.957 26 H 0.028 0.972 27 H 0.265 0.735 28 H 0.195 0.805 29 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.529 -7.302 -11.027 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.039 4.039 3 N -0.311 5.311 4 C 0.097 3.903 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.356 3.644 14 O -0.407 6.407 15 C -0.219 4.219 16 C -0.060 4.060 17 N -0.285 5.285 18 S 0.407 5.593 19 C -0.343 4.343 20 H 0.087 0.913 21 H 0.089 0.911 22 H 0.078 0.922 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.211 0.789 29 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -10.268 -7.671 -12.822 18.130 hybrid contribution -0.300 1.454 2.282 2.722 sum -10.568 -6.217 -10.540 16.169 Atomic orbital electron populations 1.22403 0.96709 1.02224 1.02924 1.22002 0.93485 0.84401 1.04027 1.47774 1.62041 1.13107 1.08135 1.19706 0.97859 0.92526 0.80165 1.21298 0.99040 1.30690 1.05802 0.90663 1.24849 0.95345 0.95929 0.96812 1.69890 1.21446 1.43835 1.18244 0.86876 0.82007 0.81100 0.79940 1.20095 1.20885 1.18813 1.17293 0.79026 0.85787 0.82261 1.90789 1.44483 1.19065 1.86363 1.20883 1.01548 1.01069 0.98446 1.22861 0.98309 0.97958 0.86893 1.76556 1.15156 1.10320 1.26457 1.83938 1.34227 1.37856 1.03325 1.28550 1.03187 0.99307 1.03298 0.91287 0.91075 0.92232 0.89895 0.89413 0.93939 0.95386 0.92506 0.78887 0.77121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.96 37.16 0.33 -1.72 15 2 C 0.09 1.24 5.57 -4.04 -0.02 1.22 15 3 N -0.58 -11.52 2.47 -176.36 -0.43 -11.95 15 4 C 0.22 5.14 4.21 -5.19 -0.02 5.12 15 5 C -0.53 -14.93 9.94 -34.44 -0.34 -15.27 15 6 H 0.08 2.34 8.06 -52.49 -0.42 1.92 15 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 15 8 N -0.90 -27.32 13.96 55.43 0.77 -26.55 15 9 Si 0.87 21.08 27.47 -169.99 -4.67 16.41 15 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 12 H -0.26 -6.18 6.54 56.52 0.37 -5.81 15 13 C 0.57 11.62 7.57 -12.56 -0.10 11.52 15 14 O -0.53 -12.89 16.45 5.27 0.09 -12.80 15 15 C -0.20 -3.14 5.52 -105.95 -0.58 -3.72 15 16 C 0.14 2.09 10.91 -18.16 -0.20 1.89 15 17 N -0.47 -6.69 12.02 29.36 0.35 -6.34 15 18 S 0.25 2.87 23.69 -107.50 -2.55 0.32 15 19 C -0.19 -2.37 8.49 30.61 0.26 -2.11 15 20 H 0.07 0.56 8.14 -51.93 -0.42 0.14 15 21 H 0.07 0.87 7.87 -51.93 -0.41 0.46 15 22 H 0.06 0.62 6.54 -51.93 -0.34 0.28 15 23 H 0.08 1.05 4.59 -51.93 -0.24 0.82 15 24 H 0.09 1.35 8.13 -51.93 -0.42 0.93 15 25 H 0.04 1.08 6.53 -51.93 -0.34 0.75 15 26 H 0.03 0.61 7.23 -51.93 -0.38 0.24 15 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 15 28 H 0.19 2.79 8.04 -52.49 -0.42 2.37 15 29 H 0.21 2.11 3.08 -52.49 -0.16 1.95 15 LS Contribution 259.96 15.07 3.92 3.92 Total: -1.00 -33.20 259.96 -6.01 -39.21 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -2.72 Total: -1.15 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.77 Total: -1.07 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.69 Total: -44.84 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.55 Total: 0.32 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.20 -6.01 -39.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183482.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.007 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds