Wall clock time and date at job start Mon Mar 30 2020 04:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35337 * 126.44302 * 2 1 4 4 C 1.35715 * 107.16981 * 180.02562 * 3 2 1 5 5 N 1.48016 * 125.81886 * 179.97438 * 4 3 2 6 6 O 1.31704 * 120.00210 * 359.97438 * 5 4 3 7 7 O 1.31703 * 119.99942 * 179.97438 * 5 4 3 8 8 N 1.32992 * 108.35655 * 359.97438 * 4 3 2 9 9 C 1.31725 * 109.09671 * 359.73469 * 8 4 3 10 10 C 1.47197 * 125.87029 * 180.26192 * 9 8 4 11 11 O 1.21540 * 119.99932 * 180.19354 * 10 9 8 12 12 N 1.34781 * 119.99925 * 0.20279 * 10 9 8 13 13 C 1.33275 * 119.99793 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99998 * 359.97438 * 13 12 10 15 15 C 1.46779 * 119.99833 * 179.97438 * 13 12 10 16 16 N 1.29321 * 119.99955 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99994 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47120 * 90.00029 * 17 15 13 19 19 H 1.48501 * 109.47019 * 209.99986 * 17 15 13 20 20 H 1.48497 * 109.46851 * 329.99809 * 17 15 13 21 21 H 1.09002 * 109.47391 * 90.02133 * 1 2 3 22 22 H 1.09001 * 109.46813 * 330.02190 * 1 2 3 23 23 H 1.09004 * 109.47041 * 210.02317 * 1 2 3 24 24 H 1.08003 * 126.41477 * 359.97438 * 3 2 1 25 25 H 0.96996 * 119.99710 * 359.97438 * 12 10 9 26 26 H 0.97007 * 120.00048 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2689 1.0887 0.0000 4 6 3.5500 0.6408 -0.0006 5 7 4.7638 1.4878 -0.0013 6 8 4.6512 2.8000 -0.0020 7 8 5.9566 0.9293 -0.0013 8 7 3.5287 -0.6890 -0.0004 9 6 2.2773 -1.1000 0.0061 10 6 1.8300 -2.5023 0.0140 11 8 0.6425 -2.7615 0.0160 12 7 2.7373 -3.4990 0.0191 13 6 2.3323 -4.7687 0.0257 14 1 1.2772 -4.9990 0.0274 15 6 3.3204 -5.8541 0.0308 16 7 4.5838 -5.5784 0.0284 17 14 2.7528 -7.6338 0.0408 18 1 2.6013 -8.1129 -1.3566 19 1 3.7581 -8.4700 0.7446 20 1 1.4478 -7.7331 0.7424 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 1.9506 2.1208 -0.0004 25 1 3.6849 -3.2921 0.0173 26 1 5.2368 -6.2957 0.0313 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687761354.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:47 Heat of formation + Delta-G solvation = 60.101787 kcal Electronic energy + Delta-G solvation = -16481.476415 eV Core-core repulsion = 13373.654833 eV Total energy + Delta-G solvation = -3107.821582 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 4.57 seconds Orbital eigenvalues (eV) -42.56828 -38.47661 -38.02300 -34.78019 -34.14214 -33.89407 -32.05517 -30.45439 -27.90483 -26.32258 -25.02488 -22.46039 -21.24941 -19.71899 -18.66682 -17.95641 -17.59991 -16.68359 -16.45908 -15.67734 -15.25345 -15.07290 -14.42997 -13.96543 -13.58093 -13.09504 -12.83164 -12.71775 -12.15751 -11.40927 -11.13329 -10.96102 -10.75185 -10.53272 -10.40748 -10.34910 -10.12599 -9.94742 -8.92962 -8.85284 -8.67167 -7.07679 -4.00164 -0.19610 1.17235 1.44437 2.46274 2.47676 2.94900 3.00356 3.04800 3.77362 3.90913 4.26429 4.35798 4.65562 4.77758 4.87034 5.19903 5.21764 5.52829 5.75205 6.05955 6.30059 6.61457 6.78103 6.97356 7.51264 7.67214 8.07969 8.70628 9.08215 9.73824 10.04378 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.006504 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.496542 B = 4303.834187 C = 5228.180100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.416 5.416 3 C 0.059 3.941 4 C 0.081 3.919 5 N 0.027 4.973 6 O -0.200 6.200 7 O -0.150 6.150 8 N -0.442 5.442 9 C 0.250 3.750 10 C 0.436 3.564 11 O -0.610 6.610 12 N -0.465 5.465 13 C -0.325 4.325 14 H 0.122 0.878 15 C 0.041 3.959 16 N -0.818 5.818 17 Si 0.944 3.056 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.259 1.259 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.123 0.877 24 H 0.206 0.794 25 H 0.404 0.596 26 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 6.817 0.073 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.096 5.096 3 C -0.089 4.089 4 C -0.135 4.135 5 N 0.502 4.498 6 O -0.381 6.381 7 O -0.348 6.348 8 N -0.165 5.165 9 C -0.013 4.013 10 C 0.225 3.775 11 O -0.502 6.502 12 N -0.092 5.092 13 C -0.459 4.459 14 H 0.140 0.860 15 C -0.176 4.176 16 N -0.450 5.450 17 Si 0.768 3.232 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.183 1.183 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.142 0.858 24 H 0.223 0.777 25 H 0.239 0.761 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.384 5.770 0.073 8.606 hybrid contribution 0.290 0.277 -0.042 0.403 sum -6.094 6.047 0.031 8.585 Atomic orbital electron populations 1.22531 0.73227 1.06391 1.05143 1.45348 1.09496 1.04936 1.49782 1.22268 0.88619 0.94549 1.03479 1.19594 0.82584 0.89924 1.21349 1.49185 1.02560 1.02127 0.95916 1.96239 1.95316 0.88672 1.57878 1.96309 1.07626 1.76596 1.54249 1.69817 1.19941 1.07539 1.19194 1.23871 0.82036 0.92101 1.03257 1.15371 0.86377 0.80017 0.95740 1.90565 1.15053 1.81322 1.63241 1.40704 1.09489 1.05345 1.53671 1.20914 0.94987 0.80301 1.49679 0.86009 1.27186 0.94000 1.02032 0.94366 1.68690 1.02117 1.37156 1.37016 0.85635 0.79484 0.78751 0.79321 1.19373 1.20127 1.18252 0.89449 0.89486 0.85843 0.77714 0.76085 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 10.64 59.85 0.64 1.41 15 2 N -0.42 -6.50 3.16 -121.96 -0.39 -6.88 15 3 C 0.06 0.85 11.23 -16.91 -0.19 0.66 15 4 C 0.08 1.53 8.08 -146.15 -1.18 0.35 15 5 N 0.03 0.53 4.98 32.61 0.16 0.69 15 6 O -0.20 -3.62 19.75 -31.57 -0.62 -4.24 15 7 O -0.15 -3.22 19.96 -31.57 -0.63 -3.85 15 8 N -0.44 -9.42 10.88 -8.32 -0.09 -9.51 15 9 C 0.25 5.10 7.78 -154.46 -1.20 3.90 15 10 C 0.44 10.23 7.74 -12.62 -0.10 10.13 15 11 O -0.61 -14.96 14.19 5.33 0.08 -14.89 15 12 N -0.46 -11.54 5.17 -10.77 -0.06 -11.60 15 13 C -0.32 -8.23 9.92 -13.48 -0.13 -8.36 15 14 H 0.12 3.15 7.19 -52.49 -0.38 2.77 15 15 C 0.04 0.97 5.69 -15.16 -0.09 0.89 15 16 N -0.82 -19.91 13.09 56.00 0.73 -19.18 15 17 Si 0.94 18.06 29.65 -169.99 -5.04 13.02 15 18 H -0.27 -5.08 7.11 56.52 0.40 -4.67 15 19 H -0.28 -5.14 7.11 56.52 0.40 -4.74 15 20 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 21 H 0.09 0.89 8.14 -51.93 -0.42 0.46 15 22 H 0.09 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.12 1.71 6.33 -51.93 -0.33 1.38 15 24 H 0.21 1.95 8.06 -52.48 -0.42 1.52 15 25 H 0.40 10.14 7.66 -40.82 -0.31 9.83 15 26 H 0.29 6.49 8.26 -40.82 -0.34 6.15 15 LS Contribution 257.01 15.07 3.87 3.87 Total: -1.00 -29.54 257.01 -5.65 -35.19 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -1.42 Total: 8.39 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -2.25 Total: 8.97 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.36 Total: -46.47 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -1.18 Total: -22.98 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.04 Total: 13.02 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.54 -5.65 -35.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687761354.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.291 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.57 seconds