Wall clock time and date at job start Mon Mar 30 2020 04:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35337 * 126.44302 * 2 1 4 4 C 1.35715 * 107.16981 * 180.02562 * 3 2 1 5 5 N 1.48016 * 125.81886 * 179.97438 * 4 3 2 6 6 O 1.31704 * 120.00210 * 359.97438 * 5 4 3 7 7 O 1.31703 * 119.99942 * 179.97438 * 5 4 3 8 8 N 1.32992 * 108.35655 * 359.97438 * 4 3 2 9 9 C 1.31725 * 109.09671 * 359.73469 * 8 4 3 10 10 C 1.47197 * 125.87029 * 180.26192 * 9 8 4 11 11 O 1.21540 * 119.99932 * 180.19354 * 10 9 8 12 12 N 1.34781 * 119.99925 * 0.20279 * 10 9 8 13 13 C 1.33275 * 119.99793 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99998 * 359.97438 * 13 12 10 15 15 C 1.46779 * 119.99833 * 179.97438 * 13 12 10 16 16 N 1.29321 * 119.99955 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99994 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47120 * 90.00029 * 17 15 13 19 19 H 1.48501 * 109.47019 * 209.99986 * 17 15 13 20 20 H 1.48497 * 109.46851 * 329.99809 * 17 15 13 21 21 H 1.09002 * 109.47391 * 90.02133 * 1 2 3 22 22 H 1.09001 * 109.46813 * 330.02190 * 1 2 3 23 23 H 1.09004 * 109.47041 * 210.02317 * 1 2 3 24 24 H 1.08003 * 126.41477 * 359.97438 * 3 2 1 25 25 H 0.96996 * 119.99710 * 359.97438 * 12 10 9 26 26 H 0.97007 * 120.00048 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2689 1.0887 0.0000 4 6 3.5500 0.6408 -0.0006 5 7 4.7638 1.4878 -0.0013 6 8 4.6512 2.8000 -0.0020 7 8 5.9566 0.9293 -0.0013 8 7 3.5287 -0.6890 -0.0004 9 6 2.2773 -1.1000 0.0061 10 6 1.8300 -2.5023 0.0140 11 8 0.6425 -2.7615 0.0160 12 7 2.7373 -3.4990 0.0191 13 6 2.3323 -4.7687 0.0257 14 1 1.2772 -4.9990 0.0274 15 6 3.3204 -5.8541 0.0308 16 7 4.5838 -5.5784 0.0284 17 14 2.7528 -7.6338 0.0408 18 1 2.6013 -8.1129 -1.3566 19 1 3.7581 -8.4700 0.7446 20 1 1.4478 -7.7331 0.7424 21 1 -0.3634 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 1.9506 2.1208 -0.0004 25 1 3.6849 -3.2921 0.0173 26 1 5.2368 -6.2957 0.0313 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687761354.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:42 Heat of formation + Delta-G solvation = 39.754392 kcal Electronic energy + Delta-G solvation = -16482.358744 eV Core-core repulsion = 13373.654833 eV Total energy + Delta-G solvation = -3108.703911 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.01667 -40.15177 -39.70292 -36.44880 -35.69940 -35.36045 -33.88149 -31.95848 -29.09876 -27.93521 -26.60163 -24.03227 -22.68798 -21.35435 -20.46685 -19.46920 -19.08367 -18.28568 -17.88907 -17.06952 -16.80894 -16.68641 -15.99088 -15.37570 -15.28185 -14.88082 -14.06381 -13.86779 -13.66191 -13.00552 -12.69230 -12.55056 -12.42056 -12.09211 -11.93149 -11.82589 -11.70850 -11.41858 -10.72098 -10.52424 -10.36694 -8.83889 -5.93218 -1.64519 -0.25180 0.01704 0.98284 1.14539 1.42318 1.42550 1.55915 2.17566 2.19341 2.74053 2.88658 3.03622 3.49933 3.68704 3.77821 4.18603 4.35786 4.55353 4.81339 4.92170 5.00375 5.20235 5.51045 5.66638 6.13877 6.27809 6.84580 7.22765 7.86755 8.29644 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.029796 B = 0.006504 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.496542 B = 4303.834187 C = 5228.180100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.402 5.402 3 C 0.128 3.872 4 C 0.038 3.962 5 N 0.031 4.969 6 O -0.125 6.125 7 O -0.253 6.253 8 N -0.470 5.470 9 C 0.223 3.777 10 C 0.446 3.554 11 O -0.622 6.622 12 N -0.484 5.484 13 C -0.375 4.375 14 H 0.107 0.893 15 C 0.009 3.991 16 N -0.854 5.854 17 Si 1.013 2.987 18 H -0.262 1.262 19 H -0.264 1.264 20 H -0.259 1.259 21 H 0.105 0.895 22 H 0.145 0.855 23 H 0.095 0.905 24 H 0.274 0.726 25 H 0.397 0.603 26 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 9.325 0.049 12.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.079 5.079 3 C -0.023 4.023 4 C -0.178 4.178 5 N 0.503 4.497 6 O -0.330 6.330 7 O -0.423 6.423 8 N -0.193 5.193 9 C -0.041 4.041 10 C 0.234 3.766 11 O -0.514 6.514 12 N -0.111 5.111 13 C -0.507 4.507 14 H 0.124 0.876 15 C -0.205 4.205 16 N -0.487 5.487 17 Si 0.832 3.168 18 H -0.187 1.187 19 H -0.189 1.189 20 H -0.183 1.183 21 H 0.124 0.876 22 H 0.163 0.837 23 H 0.114 0.886 24 H 0.289 0.711 25 H 0.231 0.769 26 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.432 8.044 0.049 11.653 hybrid contribution 0.697 0.012 -0.038 0.698 sum -7.734 8.057 0.011 11.168 Atomic orbital electron populations 1.22929 0.70244 1.07938 1.06836 1.45718 1.11074 1.03746 1.47397 1.23306 0.86052 0.96235 0.96713 1.19940 0.83672 0.89362 1.24789 1.49276 1.02826 1.02194 0.95397 1.96174 1.95209 0.88816 1.52802 1.96356 1.08260 1.76748 1.60951 1.69608 1.21121 1.10007 1.18573 1.23051 0.82861 0.92003 1.06194 1.15790 0.86076 0.81220 0.93478 1.90539 1.15570 1.82427 1.62865 1.40744 1.09188 1.05730 1.55481 1.20907 0.94802 0.81335 1.53641 0.87552 1.28071 0.93785 1.05562 0.93048 1.68737 1.03114 1.38698 1.38119 0.84668 0.79035 0.73536 0.79536 1.18659 1.18870 1.18293 0.87626 0.83658 0.88607 0.71057 0.76855 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 10.64 127.77 1.36 2.43 15 2 N -0.40 -10.96 3.16 -539.78 -1.70 -12.66 15 3 C 0.13 2.94 11.23 83.57 0.94 3.87 15 4 C 0.04 1.33 8.08 128.73 1.04 2.37 15 5 N 0.03 1.16 4.98 -50.74 -0.25 0.90 15 6 O -0.13 -3.98 19.75 3.51 0.07 -3.91 15 7 O -0.25 -11.31 19.96 3.51 0.07 -11.24 15 8 N -0.47 -20.11 10.88 -180.25 -1.96 -22.07 15 9 C 0.22 8.97 7.78 136.16 1.06 10.03 15 10 C 0.45 21.45 7.74 86.60 0.67 22.12 15 11 O -0.62 -31.02 14.19 -3.84 -0.05 -31.08 15 12 N -0.48 -25.34 5.17 -306.26 -1.58 -26.92 15 13 C -0.37 -20.02 9.92 86.71 0.86 -19.16 15 14 H 0.11 5.83 7.19 -2.91 -0.02 5.80 15 15 C 0.01 0.42 5.69 87.30 0.50 0.92 15 16 N -0.85 -43.41 13.09 23.25 0.30 -43.11 15 17 Si 1.01 37.81 29.65 68.60 2.03 39.84 15 18 H -0.26 -9.42 7.11 99.48 0.71 -8.72 15 19 H -0.26 -9.26 7.11 99.48 0.71 -8.56 15 20 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 21 H 0.11 1.63 8.14 -2.39 -0.02 1.61 15 22 H 0.15 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.10 2.41 6.33 -2.38 -0.02 2.39 15 24 H 0.27 2.53 8.06 -2.91 -0.02 2.50 15 25 H 0.40 21.34 7.66 -92.71 -0.71 20.63 15 26 H 0.30 13.76 8.26 -92.70 -0.77 12.99 15 Total: -1.00 -70.73 257.01 3.89 -66.84 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.55 Total: 20.82 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 6.43 Total: 22.58 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -5.20 Total: -103.85 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: 0.08 Total: -46.22 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -70.73 3.89 -66.84 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687761354.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.590 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds