Wall clock time and date at job start Mon Mar 30 2020 03:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47183 * 234.08544 * 3 2 1 5 5 C 1.36938 * 119.99632 * 96.00116 * 4 3 2 6 6 H 1.08007 * 119.99687 * 159.11782 * 5 4 3 7 7 C 1.38845 * 120.00458 * 339.11247 * 5 4 3 8 8 N 1.31535 * 119.99829 * 339.46860 * 7 5 4 9 9 Si 1.86804 * 120.00179 * 159.46662 * 7 5 4 10 10 H 1.48499 * 109.47089 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46994 * 120.00169 * 9 7 5 12 12 H 1.48499 * 109.46811 * 240.00452 * 9 7 5 13 13 C 1.38543 * 120.00335 * 275.73153 * 4 3 2 14 14 C 1.39510 * 120.50789 * 185.27245 * 13 4 3 15 15 C 1.38533 * 118.35839 * 179.97438 * 14 13 4 16 16 F 1.35094 * 120.41233 * 179.97438 * 15 14 13 17 17 N 1.32750 * 119.16628 * 0.02562 * 15 14 13 18 18 C 1.32048 * 120.94948 * 359.97438 * 17 15 14 19 19 F 1.35101 * 119.09301 * 179.97438 * 18 17 15 20 20 N 1.31960 * 121.80610 * 359.72188 * 18 17 15 21 21 H 1.09001 * 109.47022 * 114.08956 * 3 2 1 22 22 H 1.09000 * 109.47300 * 354.08968 * 3 2 1 23 23 H 0.96998 * 119.99827 * 179.97438 * 8 7 5 24 24 H 1.08005 * 120.81825 * 359.97438 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.8111 1.1186 5 6 3.4413 0.2103 2.2998 6 1 4.0991 0.7165 2.9909 7 6 2.9460 -1.0494 2.6089 8 7 1.8649 -1.4966 2.0078 9 14 3.8148 -2.1090 3.8785 10 1 4.9974 -1.3813 4.4048 11 1 2.8821 -2.4094 4.9943 12 1 4.2552 -3.3783 3.2460 13 6 3.2133 2.1845 0.9797 14 6 3.7787 2.9535 1.9972 15 6 3.8746 4.3229 1.8111 16 9 4.4146 5.1071 2.7695 17 7 3.4284 4.8549 0.6797 18 6 2.8983 4.0983 -0.2638 19 9 2.4556 4.6792 -1.4003 20 7 2.7937 2.7897 -0.1290 21 1 2.9711 0.4203 -0.9382 22 1 2.9718 -1.0214 0.1058 23 1 1.5191 -2.3768 2.2235 24 1 4.1329 2.4925 2.9074 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690843088.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:31 Heat of formation + Delta-G solvation = 3.323105 kcal Electronic energy + Delta-G solvation = -16466.300397 eV Core-core repulsion = 13244.929192 eV Total energy + Delta-G solvation = -3221.371206 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.052 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -50.16290 -50.08150 -41.59534 -38.89686 -36.68256 -34.75631 -33.39232 -32.04404 -29.33397 -27.02795 -25.04908 -23.77229 -20.50997 -19.95122 -19.01085 -18.29259 -17.79612 -17.66420 -17.07399 -16.58082 -16.31225 -16.11301 -15.60666 -15.33609 -14.75725 -14.63144 -14.36989 -13.88751 -13.54546 -13.27112 -12.94331 -12.76519 -12.31264 -12.24068 -11.98941 -11.70862 -11.12041 -10.58719 -10.41136 -9.48541 -8.60856 -6.08643 -0.06088 0.18391 1.43054 1.51821 1.61432 1.71026 1.98750 2.22106 2.29205 2.55280 2.67590 2.84824 2.95282 3.54128 3.86087 4.25687 4.37853 4.52640 4.67585 4.73087 5.28736 5.41774 5.60047 5.86065 6.34321 6.80257 6.92488 6.97816 7.33954 8.40837 Molecular weight = 240.05amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.009322 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.008591 B = 3002.885134 C = 3966.098015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.264 3.736 3 C 0.235 3.765 4 N -0.386 5.386 5 C -0.336 4.336 6 H 0.129 0.871 7 C 0.011 3.989 8 N -0.874 5.874 9 Si 1.003 2.997 10 H -0.250 1.250 11 H -0.290 1.290 12 H -0.271 1.271 13 C 0.398 3.602 14 C -0.312 4.312 15 C 0.391 3.609 16 F -0.100 7.100 17 N -0.663 5.663 18 C 0.559 3.441 19 F -0.083 7.083 20 N -0.625 5.625 21 H 0.123 0.877 22 H 0.134 0.866 23 H 0.283 0.717 24 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.178 0.567 0.313 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.054 4.054 3 C 0.108 3.892 4 N -0.074 5.074 5 C -0.464 4.464 6 H 0.146 0.854 7 C -0.196 4.196 8 N -0.507 5.507 9 Si 0.826 3.174 10 H -0.173 1.173 11 H -0.216 1.216 12 H -0.196 1.196 13 C 0.153 3.847 14 C -0.344 4.344 15 C 0.238 3.762 16 F -0.079 7.079 17 N -0.402 5.402 18 C 0.275 3.725 19 F -0.063 7.063 20 N -0.361 5.361 21 H 0.141 0.859 22 H 0.151 0.849 23 H 0.094 0.906 24 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.059 0.465 -0.419 5.098 hybrid contribution 0.511 -0.486 1.134 1.336 sum 5.570 -0.021 0.715 5.616 Atomic orbital electron populations 1.80875 1.14840 1.11653 1.11482 1.29464 0.95621 0.90215 0.90112 1.18971 0.80415 0.99141 0.90635 1.42804 1.52307 0.99693 1.12619 1.20316 1.27957 1.00867 0.97228 0.85395 1.26275 0.94460 0.98729 1.00144 1.70015 1.17763 1.20086 1.42884 0.84696 0.78340 0.77803 0.76588 1.17298 1.21628 1.19553 1.17939 0.93394 0.85555 0.87842 1.21539 1.16060 0.91772 1.05027 1.17286 0.90091 0.85462 0.83329 1.91614 1.82091 1.75169 1.59023 1.66735 1.26295 1.42626 1.04589 1.17751 0.89519 0.83346 0.81886 1.91660 1.85914 1.83416 1.45285 1.67070 1.31025 1.09922 1.28118 0.85947 0.84889 0.90636 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.50 18.54 20.01 0.37 -24.13 14 2 C 0.26 11.56 13.48 89.44 1.21 12.76 14 3 C 0.23 8.75 5.05 84.57 0.43 9.18 14 4 N -0.39 -15.52 2.68 -527.20 -1.41 -16.93 14 5 C -0.34 -13.40 9.13 84.04 0.77 -12.64 14 6 H 0.13 4.71 6.07 -2.91 -0.02 4.70 14 7 C 0.01 0.43 4.86 84.88 0.41 0.84 14 8 N -0.87 -38.22 9.54 21.65 0.21 -38.01 14 9 Si 1.00 31.98 29.60 68.60 2.03 34.01 14 10 H -0.25 -7.45 7.11 99.48 0.71 -6.74 14 11 H -0.29 -9.84 7.11 99.48 0.71 -9.13 14 12 H -0.27 -8.48 7.11 99.48 0.71 -7.78 14 13 C 0.40 16.01 7.30 133.10 0.97 16.98 14 14 C -0.31 -11.50 9.37 22.65 0.21 -11.28 14 15 C 0.39 14.41 8.50 84.62 0.72 15.13 14 16 F -0.10 -3.34 17.30 44.97 0.78 -2.56 14 17 N -0.66 -26.27 10.46 -202.42 -2.12 -28.39 14 18 C 0.56 22.21 9.46 180.76 1.71 23.92 14 19 F -0.08 -3.06 17.32 44.97 0.78 -2.28 14 20 N -0.62 -25.50 9.43 -198.76 -1.88 -27.37 14 21 H 0.12 3.95 7.67 -2.39 -0.02 3.94 14 22 H 0.13 4.73 6.65 -2.39 -0.02 4.72 14 23 H 0.28 11.97 8.31 -92.71 -0.77 11.20 14 24 H 0.17 5.62 6.19 -2.91 -0.02 5.60 14 Total: -1.00 -50.72 238.25 6.47 -44.26 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.28 Total: 6.50 kcal Atomic # 6 Polarization: 48.47 SS G_CDS: 6.43 Total: 54.90 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -4.83 Total: -134.83 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 1.56 Total: -4.84 kcal Atomic # 14 Polarization: 31.98 SS G_CDS: 2.03 Total: 34.01 kcal Total: -50.72 6.47 -44.26 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690843088.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.582 kcal (2) G-P(sol) polarization free energy of solvation -50.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds