Wall clock time and date at job start Mon Mar 30 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46563 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46947 * 119.99839 * 9 7 5 12 12 H 1.48494 * 109.47178 * 240.00424 * 9 7 5 13 13 S 1.81003 * 109.47194 * 119.99905 * 2 1 3 14 14 C 1.76206 * 99.99950 * 295.00093 * 13 2 1 15 15 N 1.32556 * 119.18927 * 359.72828 * 14 13 2 16 16 C 1.32424 * 120.87551 * 179.76075 * 15 14 13 17 17 C 1.38260 * 119.27330 * 0.50234 * 16 15 14 18 18 C 1.39415 * 118.51710 * 359.75366 * 17 16 15 19 19 O 1.35509 * 120.46052 * 180.02562 * 18 17 16 20 20 N 1.32517 * 119.19564 * 179.97438 * 14 13 2 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 25 25 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 26 26 H 0.96998 * 119.99888 * 180.02562 * 8 7 5 27 27 H 1.07997 * 120.35845 * 180.23377 * 16 15 14 28 28 H 1.07994 * 120.74095 * 179.77081 * 17 16 15 29 29 H 0.96698 * 114.00414 * 269.97879 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0611 -2.4367 10 1 6.5837 -0.2907 -1.2662 11 1 6.6864 -2.4218 -2.4180 12 1 6.4862 -0.3659 -3.6883 13 16 2.1333 -0.8532 1.4779 14 6 1.5439 0.2423 2.7258 15 7 0.8724 1.3279 2.3684 16 6 0.4102 2.1714 3.2785 17 6 0.6434 1.9162 4.6172 18 6 1.3572 0.7692 4.9615 19 8 1.6078 0.4804 6.2616 20 7 1.7870 -0.0366 3.9982 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.7517 -1.7715 -1.2055 25 1 1.6055 -0.2617 -2.1369 26 1 4.0610 -2.2453 -4.0343 27 1 -0.1392 3.0514 2.9781 28 1 0.2805 2.5901 5.3791 29 1 2.4356 0.8529 6.5948 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695885296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:40 Heat of formation + Delta-G solvation = -1.005202 kcal Electronic energy + Delta-G solvation = -14450.729136 eV Core-core repulsion = 11886.550971 eV Total energy + Delta-G solvation = -2564.178165 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 5.32 seconds Orbital eigenvalues (eV) -40.84177 -37.65094 -34.63983 -33.15514 -32.15639 -31.24651 -27.47160 -24.61737 -24.09419 -23.31472 -20.65607 -19.38959 -17.76040 -16.82408 -16.36924 -15.85908 -15.41245 -14.77170 -14.45708 -14.24752 -13.92071 -12.97195 -12.55031 -12.18328 -11.83701 -11.68830 -11.34365 -10.86850 -10.71935 -10.65443 -10.50597 -10.26180 -9.88545 -9.54692 -9.45576 -9.16864 -9.14187 -8.40949 -7.21767 -6.05741 -4.08186 0.79429 1.05408 1.75942 2.87459 3.30779 3.37972 3.38570 3.43733 3.73264 4.41284 4.43848 4.74298 5.02914 5.09608 5.31830 5.50358 5.75508 5.87420 6.08810 6.14259 6.55137 6.62276 6.77984 6.94818 7.25274 7.49325 7.55506 7.91339 7.98509 8.27592 8.96966 9.56516 11.05280 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.036474 B = 0.006044 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.477727 B = 4631.389021 C = 5048.899114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.066 4.066 3 H 0.092 0.908 4 C 0.036 3.964 5 C -0.523 4.523 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.284 1.284 13 S 0.044 5.956 14 C 0.315 3.685 15 N -0.526 5.526 16 C 0.174 3.826 17 C -0.272 4.272 18 C 0.370 3.630 19 O -0.479 6.479 20 N -0.531 5.531 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.027 0.973 25 H 0.040 0.960 26 H 0.261 0.739 27 H 0.170 0.830 28 H 0.147 0.853 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.680 7.924 13.777 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 H 0.110 0.890 4 C -0.003 4.003 5 C -0.562 4.562 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.210 1.210 13 S 0.284 5.716 14 C -0.057 4.057 15 N -0.246 5.246 16 C 0.005 3.995 17 C -0.301 4.301 18 C 0.178 3.822 19 O -0.286 6.286 20 N -0.259 5.259 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.045 0.955 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.188 0.812 28 H 0.165 0.835 29 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -5.157 5.805 12.938 15.090 hybrid contribution 0.446 2.020 0.682 2.178 sum -4.711 7.825 13.620 16.399 Atomic orbital electron populations 1.22116 0.94328 1.01723 1.02240 1.23703 0.97578 1.02884 0.95342 0.88976 1.19110 0.96488 0.95678 0.89032 1.21296 0.91523 1.34855 1.08491 0.91857 1.24988 0.98561 0.95052 0.95530 1.69963 1.35598 1.35614 1.12032 0.86525 0.85618 0.77908 0.77985 1.19537 1.20917 1.21034 1.86535 1.64514 1.26584 0.93949 1.25744 0.92098 0.94412 0.93488 1.69002 1.13033 1.04679 1.37863 1.23158 0.91672 0.96296 0.88361 1.22680 1.08221 1.00020 0.99181 1.19445 0.90555 0.87673 0.84494 1.84693 1.45431 1.78841 1.19681 1.68096 1.24751 1.32839 1.00228 0.92839 0.92108 0.91815 0.95494 0.94221 0.92910 0.81244 0.83547 0.73522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.96 37.16 0.33 -2.23 15 2 C -0.07 -1.36 2.14 -26.74 -0.06 -1.41 15 3 H 0.09 1.94 7.95 -51.92 -0.41 1.53 15 4 C 0.04 0.89 4.44 -27.89 -0.12 0.76 15 5 C -0.52 -14.31 8.53 -34.44 -0.29 -14.60 15 6 H 0.06 1.72 7.60 -52.49 -0.40 1.32 15 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 8 N -0.89 -26.19 13.29 55.43 0.74 -25.46 15 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 15 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 13 S 0.04 0.91 21.00 -107.50 -2.26 -1.35 15 14 C 0.32 5.76 7.65 -90.87 -0.70 5.07 15 15 N -0.53 -8.57 6.85 -13.50 -0.09 -8.66 15 16 C 0.17 2.12 11.29 -17.29 -0.20 1.92 15 17 C -0.27 -3.06 10.12 -39.14 -0.40 -3.46 15 18 C 0.37 5.14 7.83 -16.72 -0.13 5.01 15 19 O -0.48 -5.36 13.57 -18.22 -0.25 -5.61 15 20 N -0.53 -9.31 10.42 -13.50 -0.14 -9.45 15 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.06 1.07 5.65 -51.93 -0.29 0.77 15 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.04 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 27 H 0.17 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.15 1.14 8.06 -52.49 -0.42 0.72 15 29 H 0.41 2.36 9.06 45.56 0.41 2.77 15 LS Contribution 269.65 15.07 4.06 4.06 Total: -1.00 -32.17 269.65 -6.98 -39.15 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -2.36 Total: -1.82 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.66 Total: -7.35 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.50 Total: -43.57 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.25 Total: -5.61 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.26 Total: -1.35 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.17 -6.98 -39.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.146 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds