Wall clock time and date at job start Mon Mar 30 2020 04:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50699 * 109.47482 * 174.99860 * 4 2 1 6 6 H 1.08000 * 120.00130 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00220 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00316 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46563 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46947 * 119.99839 * 9 7 5 12 12 H 1.48494 * 109.47178 * 240.00424 * 9 7 5 13 13 S 1.81003 * 109.47194 * 119.99905 * 2 1 3 14 14 C 1.76206 * 99.99950 * 295.00093 * 13 2 1 15 15 N 1.32556 * 119.18927 * 359.72828 * 14 13 2 16 16 C 1.32424 * 120.87551 * 179.76075 * 15 14 13 17 17 C 1.38260 * 119.27330 * 0.50234 * 16 15 14 18 18 C 1.39415 * 118.51710 * 359.75366 * 17 16 15 19 19 O 1.35509 * 120.46052 * 180.02562 * 18 17 16 20 20 N 1.32517 * 119.19564 * 179.97438 * 14 13 2 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 25 25 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 26 26 H 0.96998 * 119.99888 * 180.02562 * 8 7 5 27 27 H 1.07997 * 120.35845 * 180.23377 * 16 15 14 28 28 H 1.07994 * 120.74095 * 179.77081 * 17 16 15 29 29 H 0.96698 * 114.00414 * 269.97879 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8379 -3.2993 9 14 6.0922 -1.0611 -2.4367 10 1 6.5837 -0.2907 -1.2662 11 1 6.6864 -2.4218 -2.4180 12 1 6.4862 -0.3659 -3.6883 13 16 2.1333 -0.8532 1.4779 14 6 1.5439 0.2423 2.7258 15 7 0.8724 1.3279 2.3684 16 6 0.4102 2.1714 3.2785 17 6 0.6434 1.9162 4.6172 18 6 1.3572 0.7692 4.9615 19 8 1.6078 0.4804 6.2616 20 7 1.7870 -0.0366 3.9982 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.7517 -1.7715 -1.2055 25 1 1.6055 -0.2617 -2.1369 26 1 4.0610 -2.2453 -4.0343 27 1 -0.1392 3.0514 2.9781 28 1 0.2805 2.5901 5.3791 29 1 2.4356 0.8529 6.5948 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695885296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:35 Heat of formation + Delta-G solvation = -25.057225 kcal Electronic energy + Delta-G solvation = -14451.772110 eV Core-core repulsion = 11886.550971 eV Total energy + Delta-G solvation = -2565.221139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94887 -38.59872 -36.46556 -34.39809 -33.99307 -32.38568 -29.35561 -25.77752 -25.25230 -25.14685 -22.34986 -20.40626 -18.96451 -18.50708 -17.96039 -17.07187 -16.56621 -16.43809 -16.12105 -15.35629 -14.93943 -14.73602 -14.18803 -13.64890 -13.29385 -13.17634 -13.10269 -12.65315 -12.45952 -12.36307 -11.78790 -11.65491 -11.40816 -11.21897 -10.99407 -10.90757 -10.54739 -10.33326 -8.71366 -8.19723 -6.28516 -0.29926 0.02248 0.34899 1.37160 1.40250 1.41844 1.54356 2.39041 2.42115 2.63842 3.15353 3.45129 3.60366 4.11423 4.15378 4.28073 4.28775 4.57120 4.61538 4.95234 5.06116 5.17639 5.32415 5.40762 5.52629 5.78255 5.89094 6.18286 6.51478 6.83780 6.84993 7.39699 8.92045 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.036474 B = 0.006044 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.477727 B = 4631.389021 C = 5048.899114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 H 0.086 0.914 4 C 0.042 3.958 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.276 1.276 13 S -0.015 6.015 14 C 0.308 3.692 15 N -0.543 5.543 16 C 0.169 3.831 17 C -0.240 4.240 18 C 0.357 3.643 19 O -0.481 6.481 20 N -0.563 5.563 21 H 0.049 0.951 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.002 0.998 25 H 0.022 0.978 26 H 0.264 0.736 27 H 0.216 0.784 28 H 0.193 0.807 29 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 10.072 15.786 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.176 4.176 3 H 0.104 0.896 4 C 0.004 3.996 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.202 1.202 13 S 0.223 5.777 14 C -0.067 4.067 15 N -0.263 5.263 16 C 0.002 3.998 17 C -0.267 4.267 18 C 0.167 3.833 19 O -0.292 6.292 20 N -0.292 5.292 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.020 0.980 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.232 0.768 28 H 0.210 0.790 29 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -5.566 7.997 15.004 17.890 hybrid contribution 0.493 1.470 0.301 1.579 sum -5.073 9.467 15.304 18.697 Atomic orbital electron populations 1.22035 0.92071 1.01908 1.03338 1.23347 0.99251 1.01445 0.93600 0.89589 1.18904 0.95515 0.94510 0.90677 1.21603 0.92889 1.34371 1.08231 0.92069 1.25832 1.03258 0.94814 0.95270 1.70075 1.37418 1.36705 1.12754 0.85509 0.80029 0.77988 0.78263 1.18907 1.20572 1.20202 1.86477 1.66971 1.28736 0.95565 1.24937 0.93935 0.94906 0.92919 1.68935 1.13204 1.04633 1.39527 1.23975 0.90930 0.96589 0.88320 1.23143 1.04914 0.98749 0.99875 1.19802 0.90840 0.88028 0.84656 1.84668 1.47062 1.79335 1.18128 1.67938 1.25944 1.34705 1.00619 0.93146 0.91142 0.90379 0.97985 0.96031 0.92730 0.76771 0.79001 0.70900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.96 71.98 0.64 -4.11 15 2 C -0.05 -1.99 2.14 30.59 0.07 -1.92 15 3 H 0.09 3.67 7.95 -2.39 -0.02 3.66 15 4 C 0.04 2.20 4.44 29.85 0.13 2.33 15 5 C -0.53 -29.92 8.53 25.60 0.22 -29.70 15 6 H 0.06 3.39 7.60 -2.91 -0.02 3.37 15 7 C 0.01 0.37 5.46 84.65 0.46 0.83 15 8 N -0.93 -55.82 13.29 21.45 0.28 -55.54 15 9 Si 0.96 44.66 29.54 68.60 2.03 46.69 15 10 H -0.26 -11.98 7.11 99.48 0.71 -11.28 15 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 13 S -0.02 -0.65 21.00 -56.49 -1.19 -1.83 15 14 C 0.31 11.08 7.65 180.44 1.38 12.46 15 15 N -0.54 -16.61 6.85 -196.64 -1.35 -17.95 15 16 C 0.17 3.41 11.29 84.61 0.95 4.37 15 17 C -0.24 -4.26 10.12 22.56 0.23 -4.04 15 18 C 0.36 8.90 7.83 84.84 0.66 9.56 15 19 O -0.48 -9.32 13.57 -88.11 -1.20 -10.51 15 20 N -0.56 -19.19 10.42 -309.34 -3.22 -22.41 15 21 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.07 2.31 8.14 -2.39 -0.02 2.29 15 23 H 0.08 2.53 5.65 -2.38 -0.01 2.51 15 24 H 0.00 0.10 8.14 -2.39 -0.02 0.08 15 25 H 0.02 1.17 8.14 -2.39 -0.02 1.15 15 26 H 0.26 14.90 8.31 -92.71 -0.77 14.13 15 27 H 0.22 2.29 8.06 -2.91 -0.02 2.26 15 28 H 0.19 1.69 8.06 -2.91 -0.02 1.66 15 29 H 0.43 3.65 9.06 -74.06 -0.67 2.98 15 Total: -1.00 -71.69 269.65 0.61 -71.08 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: 0.50 Total: 0.70 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 4.75 Total: -10.22 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -4.29 Total: -95.90 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.20 Total: -10.51 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -1.19 Total: -1.83 kcal Total: -71.69 0.61 -71.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.026 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds