Wall clock time and date at job start Mon Mar 30 2020 04:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48504 * 109.46636 * 239.99779 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00220 * 3 2 1 7 7 C 1.39584 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.36121 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48835 * 119.99868 * 180.27524 * 10 9 7 13 13 O 1.21433 * 119.99754 * 359.72065 * 12 10 9 14 14 N 1.34775 * 119.99729 * 179.72512 * 12 10 9 15 15 C 1.47334 * 135.86486 * 359.62223 * 14 12 10 16 16 C 1.52424 * 87.48659 * 154.15721 * 15 14 12 17 17 C 1.52700 * 122.21412 * 150.49129 * 16 15 14 18 18 O 1.44464 * 85.00888 * 149.12677 * 17 16 15 19 19 C 1.44468 * 93.66885 * 336.83781 * 18 17 16 20 20 C 1.47329 * 135.86057 * 180.02562 * 14 12 10 21 21 H 0.97000 * 119.99293 * 0.02562 * 1 2 3 22 22 H 0.97001 * 120.00350 * 359.97438 * 9 7 2 23 23 H 1.08998 * 113.53422 * 268.79532 * 15 14 12 24 24 H 1.09009 * 113.52714 * 39.43506 * 15 14 12 25 25 H 1.08990 * 113.94757 * 263.14376 * 17 16 15 26 26 H 1.09001 * 113.94216 * 35.11320 * 17 16 15 27 27 H 1.09006 * 113.94238 * 269.15098 * 19 18 17 28 28 H 1.08998 * 113.94922 * 137.18008 * 19 18 17 29 29 H 1.09001 * 113.53406 * 320.56316 * 20 14 12 30 30 H 1.09005 * 113.53400 * 91.14292 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.0980 1.6963 -1.2125 5 1 1.2793 2.7465 -0.0006 6 1 3.0980 1.6964 1.2124 7 6 2.0081 -1.2088 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3275 -2.3877 0.0016 10 6 2.0013 -3.5549 0.0026 11 8 3.2164 -3.5549 0.0022 12 6 1.2571 -4.8438 -0.0024 13 8 0.0428 -4.8437 -0.0023 14 7 1.9310 -6.0110 -0.0070 15 6 3.3482 -6.4137 -0.0153 16 6 2.9131 -7.7141 0.6502 17 6 3.6701 -9.0248 0.4484 18 8 3.2307 -9.3385 1.7883 19 6 3.0477 -7.9525 2.1525 20 6 1.5711 -7.4396 -0.0130 21 1 -0.4849 0.8401 -0.0004 22 1 0.3575 -2.3877 0.0023 23 1 3.7554 -6.5523 -1.0168 24 1 3.9814 -5.7905 0.6164 25 1 3.2422 -9.6690 -0.3197 26 1 4.7491 -8.9024 0.3539 27 1 3.9302 -7.4915 2.5962 28 1 2.1341 -7.7596 2.7147 29 1 0.7161 -7.6757 0.6205 30 1 1.4845 -7.8624 -1.0140 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697131245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:39 Heat of formation + Delta-G solvation = -32.459740 kcal Electronic energy + Delta-G solvation = -16938.833286 eV Core-core repulsion = 13930.538279 eV Total energy + Delta-G solvation = -3008.295007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.40658 -39.20446 -37.49349 -36.55419 -34.22691 -31.47914 -29.93453 -26.80074 -26.71939 -25.84991 -25.27674 -22.14840 -19.03090 -18.61727 -18.16760 -16.77773 -16.52320 -16.30249 -16.05461 -15.45423 -14.99870 -14.71434 -13.97081 -13.94891 -13.68038 -12.79646 -12.68502 -12.54827 -12.26113 -11.79280 -11.44387 -11.20229 -11.05525 -10.60098 -10.56123 -10.44002 -10.32766 -9.86235 -9.73628 -8.49289 -8.25459 -8.25101 -6.69816 -4.02446 2.38389 2.90082 3.14525 3.14884 3.19408 3.51672 3.96636 4.03743 4.07053 4.29651 4.65361 4.83268 5.15419 5.16099 5.20999 5.38205 5.41565 5.54238 5.65077 5.74506 5.81381 5.92019 5.94378 5.99593 6.14804 7.27870 7.71249 7.91883 8.23197 8.53080 8.92372 9.28296 9.81402 10.44971 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.053459 B = 0.005158 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.644903 B = 5426.877785 C = 5706.513572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.031 3.969 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.499 5.499 10 C 0.399 3.601 11 O -0.593 6.593 12 C 0.542 3.458 13 O -0.544 6.544 14 N -0.629 5.629 15 C 0.126 3.874 16 C -0.182 4.182 17 C 0.059 3.941 18 O -0.382 6.382 19 C 0.069 3.931 20 C 0.134 3.866 21 H 0.281 0.719 22 H 0.405 0.595 23 H 0.087 0.913 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 -12.506 0.471 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.133 5.133 10 C 0.183 3.817 11 O -0.481 6.481 12 C 0.330 3.670 13 O -0.421 6.421 14 N -0.366 5.366 15 C 0.003 3.997 16 C -0.183 4.183 17 C -0.018 4.018 18 O -0.301 6.301 19 C -0.007 4.007 20 C 0.011 3.989 21 H 0.092 0.908 22 H 0.240 0.760 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.100 0.900 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.095 -12.349 0.613 13.373 hybrid contribution -0.253 0.995 -0.231 1.053 sum 4.842 -11.354 0.381 12.349 Atomic orbital electron populations 1.69483 1.06538 1.29517 1.45103 1.25596 0.95635 1.00487 0.95841 0.85763 0.78863 0.79263 0.79506 1.19374 1.20557 1.19360 1.19824 0.93927 0.81804 1.48109 0.87011 1.41554 1.10482 1.04126 1.57158 1.18790 0.87769 0.83819 0.91314 1.90555 1.12769 1.86430 1.58383 1.20436 0.86764 0.84008 0.75801 1.90702 1.13919 1.87131 1.50323 1.49278 1.09535 1.04196 1.73544 1.22800 0.84715 0.91285 1.00936 1.24664 0.99276 0.96574 0.97760 1.23673 0.99138 0.93012 0.85999 1.89730 1.87079 1.24884 1.28430 1.23599 1.02377 0.81096 0.93644 1.22501 0.95841 0.80281 1.00256 0.90816 0.76016 0.89505 0.88576 0.88755 0.89299 0.89117 0.88750 0.89978 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.24 13.03 55.53 0.72 -22.52 16 2 C 0.03 0.81 5.51 -17.39 -0.10 0.72 16 3 Si 0.94 19.94 29.56 -169.99 -5.02 14.92 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.31 -8.40 9.67 -15.15 -0.15 -8.55 16 8 H 0.11 3.11 7.15 -52.49 -0.38 2.74 16 9 N -0.50 -13.42 5.25 -11.59 -0.06 -13.48 16 10 C 0.40 10.13 7.82 -11.87 -0.09 10.04 16 11 O -0.59 -15.66 14.75 5.36 0.08 -15.58 16 12 C 0.54 12.21 8.11 -11.87 -0.10 12.12 16 13 O -0.54 -13.30 17.24 5.42 0.09 -13.20 16 14 N -0.63 -11.17 3.69 -185.93 -0.69 -11.85 16 15 C 0.13 1.77 7.43 -7.34 -0.05 1.72 16 16 C -0.18 -2.07 1.50 -155.54 -0.23 -2.30 16 17 C 0.06 0.53 9.05 36.99 0.33 0.87 16 18 O -0.38 -4.55 12.45 -35.23 -0.44 -4.99 16 19 C 0.07 0.78 9.06 36.99 0.34 1.11 16 20 C 0.13 1.77 8.44 -7.46 -0.06 1.70 16 21 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 22 H 0.40 11.00 7.35 -40.82 -0.30 10.70 16 23 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.10 1.49 7.42 -51.92 -0.39 1.11 16 25 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 271.09 15.07 4.09 4.09 Total: -1.00 -31.81 271.09 -4.50 -36.30 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.15 Total: 8.89 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: -0.11 Total: 17.43 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.02 Total: -47.85 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.27 Total: -33.78 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.81 -4.50 -36.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697131245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.844 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds