Wall clock time and date at job start Mon Mar 30 2020 04:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99635 * 2 1 4 4 O 1.21283 * 119.99649 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99988 * 0.02562 * 3 2 1 6 6 S 1.81005 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.76192 * 100.00090 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00308 * 0.02562 * 7 6 5 9 9 C 1.38797 * 119.99747 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00171 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99848 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47396 * 59.99622 * 11 9 7 13 13 H 1.48504 * 109.46972 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46804 * 299.99684 * 11 9 7 15 15 C 1.46493 * 120.00444 * 180.27289 * 2 1 3 16 16 C 1.47202 * 115.55658 * 214.05592 * 15 2 1 17 17 N 3.49909 * 148.49415 * 134.17442 * 2 1 3 18 18 C 1.53006 * 117.49507 * 68.34705 * 15 2 1 19 19 C 1.53001 * 117.49781 * 359.72615 * 15 2 1 20 20 H 1.08995 * 109.47693 * 90.00207 * 1 2 3 21 21 H 1.09003 * 109.47006 * 210.00121 * 1 2 3 22 22 H 1.09004 * 109.47665 * 329.99813 * 1 2 3 23 23 H 1.08998 * 109.47224 * 299.99701 * 5 3 2 24 24 H 1.09002 * 109.47054 * 60.00213 * 5 3 2 25 25 H 0.97000 * 119.99868 * 179.97438 * 10 9 7 26 26 H 1.08996 * 117.49757 * 0.02562 * 18 15 2 27 27 H 1.08998 * 117.49562 * 145.02468 * 18 15 2 28 28 H 1.09004 * 117.50145 * 214.97560 * 19 15 2 29 29 H 1.08997 * 117.49924 * 359.97438 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 0.0006 6 16 2.5613 3.8482 0.0012 7 6 1.4412 5.2082 0.0010 8 1 0.3759 5.0305 0.0011 9 6 1.9279 6.5081 0.0009 10 7 3.2262 6.7247 0.0013 11 14 0.7403 7.9501 0.0014 12 1 -0.1143 7.8871 1.2142 13 1 1.5064 9.2222 0.0017 14 1 -0.1152 7.8871 -1.2108 15 6 2.1975 -1.2686 -0.0060 16 6 3.4679 -1.2719 0.7376 17 7 4.4482 -1.2742 1.3115 18 6 2.1171 -2.1247 -1.2716 19 6 1.3755 -2.5590 -0.0057 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 0.7583 2.5302 -0.8891 24 1 0.7589 2.5298 0.8909 25 1 3.5663 7.6332 0.0008 26 1 1.5194 -1.7438 -2.0997 27 1 3.0050 -2.6905 -1.5537 28 1 1.7755 -3.4105 0.5449 29 1 0.2897 -2.4641 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701254933.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:56 Heat of formation + Delta-G solvation = 33.819311 kcal Electronic energy + Delta-G solvation = -14426.383477 eV Core-core repulsion = 11863.715417 eV Total energy + Delta-G solvation = -2562.668061 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21004 -37.66923 -35.73443 -33.95307 -32.45229 -29.22459 -27.37073 -25.53268 -23.68130 -22.79334 -20.58889 -18.00872 -17.43593 -16.43276 -15.97726 -15.39463 -14.82759 -14.60049 -14.01750 -13.50125 -13.34325 -13.28990 -12.82080 -12.70028 -12.54754 -12.47984 -12.03869 -11.68962 -11.23364 -11.07176 -11.05671 -10.88672 -10.77409 -9.85373 -9.47801 -9.08152 -8.67243 -8.26651 -6.53888 -6.23444 -3.95193 2.30967 2.50896 2.89317 3.07887 3.21990 3.23939 3.27717 3.46968 3.69495 3.73949 4.17490 4.34467 4.56516 4.83800 4.95237 5.08046 5.11445 5.17314 5.34417 5.45840 5.55281 5.60664 5.68702 5.81490 6.04876 6.36660 7.26676 7.56756 7.68311 8.32396 8.37403 9.21355 10.83877 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.046774 B = 0.005494 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.477237 B = 5095.127073 C = 5523.390140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.532 3.468 4 O -0.499 6.499 5 C -0.147 4.147 6 S -0.060 6.060 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.189 3.811 16 C 0.242 3.758 17 N -0.402 5.402 18 C -0.155 4.155 19 C -0.152 4.152 20 H 0.062 0.938 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.269 0.731 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.144 -16.946 -2.167 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.329 5.329 3 C 0.320 3.680 4 O -0.371 6.371 5 C -0.297 4.297 6 S 0.167 5.833 7 C -0.685 4.685 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.746 3.254 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.099 3.901 16 C -0.076 4.076 17 N -0.078 5.078 18 C -0.195 4.195 19 C -0.191 4.191 20 H 0.081 0.919 21 H 0.095 0.905 22 H 0.102 0.898 23 H 0.112 0.888 24 H 0.111 0.889 25 H 0.079 0.921 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.701 -16.745 -1.280 18.081 hybrid contribution -2.599 1.094 -0.221 2.828 sum -9.299 -15.651 -1.500 18.267 Atomic orbital electron populations 1.21934 0.78160 1.04010 1.02491 1.47408 1.06733 1.02701 1.76066 1.20567 0.88134 0.84328 0.74960 1.90751 1.13712 1.86037 1.46561 1.23549 1.04602 0.96520 1.05035 1.85513 1.07807 0.93263 1.96730 1.22806 0.94249 0.92144 1.59310 0.90884 1.25000 0.95685 0.98397 0.94474 1.70008 1.11788 1.21834 1.46567 0.86214 0.80155 0.80268 0.78801 1.19919 1.20809 1.19891 1.16687 0.87872 0.84683 1.00888 1.27088 0.93142 0.93851 0.93545 1.81166 1.10491 1.07153 1.08977 1.23576 1.03383 1.00694 0.91866 1.23555 1.00024 0.94514 1.00964 0.91918 0.90538 0.89819 0.88807 0.88939 0.92074 0.86593 0.87226 0.86942 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 9.74 59.84 0.58 1.22 15 2 N -0.59 -7.84 3.18 -169.70 -0.54 -8.38 15 3 C 0.53 9.96 7.53 -10.98 -0.08 9.88 15 4 O -0.50 -11.59 14.02 5.56 0.08 -11.51 15 5 C -0.15 -2.88 4.71 36.00 0.17 -2.71 15 6 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 15 7 C -0.54 -15.12 9.50 30.94 0.29 -14.83 15 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 15 9 C 0.07 2.10 5.49 -17.43 -0.10 2.00 15 10 N -0.87 -26.19 13.22 55.49 0.73 -25.46 15 11 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 15 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 14 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 15 C 0.19 2.26 2.77 -134.60 -0.37 1.88 15 16 C 0.24 3.93 12.83 -20.76 -0.27 3.66 15 17 N -0.40 -7.60 18.54 42.15 0.78 -6.82 15 18 C -0.16 -1.26 10.11 -26.73 -0.27 -1.53 15 19 C -0.15 -1.00 9.39 -26.73 -0.25 -1.25 15 20 H 0.06 0.42 8.14 -51.93 -0.42 0.00 15 21 H 0.08 0.41 6.11 -51.93 -0.32 0.09 15 22 H 0.08 0.72 6.44 -51.93 -0.33 0.39 15 23 H 0.09 1.65 8.11 -51.92 -0.42 1.23 15 24 H 0.09 1.66 7.40 -51.91 -0.38 1.27 15 25 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 26 H 0.12 0.81 8.14 -51.93 -0.42 0.38 15 27 H 0.11 0.83 8.14 -51.93 -0.42 0.40 15 28 H 0.11 0.62 8.14 -51.93 -0.42 0.20 15 29 H 0.12 0.50 6.17 -51.93 -0.32 0.18 15 LS Contribution 275.40 15.07 4.15 4.15 Total: -1.00 -36.60 275.40 -5.34 -41.94 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -3.01 Total: -4.61 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.29 Total: -1.67 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.97 Total: -40.66 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -36.60 -5.34 -41.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701254933.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.759 kcal (2) G-P(sol) polarization free energy of solvation -36.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds