Wall clock time and date at job start Mon Mar 30 2020 04:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46698 * 2 1 4 4 N 1.46497 * 109.46811 * 180.02562 * 3 2 1 5 5 C 1.36900 * 119.99711 * 264.32807 * 4 3 2 6 6 H 1.08005 * 119.99558 * 133.06109 * 5 4 3 7 7 C 1.39019 * 120.00177 * 313.05868 * 5 4 3 8 8 N 1.31379 * 120.00142 * 2.72261 * 7 5 4 9 9 Si 1.86803 * 120.00258 * 182.72060 * 7 5 4 10 10 H 1.48504 * 109.46789 * 60.00138 * 9 7 5 11 11 H 1.48502 * 109.47205 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47064 * 300.00500 * 9 7 5 13 13 C 1.34783 * 120.00380 * 84.33255 * 4 3 2 14 14 O 1.21606 * 119.99586 * 5.14983 * 13 4 3 15 15 C 1.47573 * 119.99801 * 185.15420 * 13 4 3 16 16 C 1.39542 * 122.11449 * 174.46836 * 15 13 4 17 17 C 1.34977 * 111.68677 * 179.78014 * 16 15 13 18 18 S 1.71756 * 105.46690 * 0.43008 * 17 16 15 19 19 N 1.30665 * 122.12231 * 354.74678 * 15 13 4 20 20 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47213 * 299.99969 * 1 2 3 22 22 H 1.08999 * 109.47720 * 60.00415 * 1 2 3 23 23 H 1.08994 * 109.47325 * 239.99951 * 2 1 3 24 24 H 1.08996 * 109.47227 * 119.99682 * 2 1 3 25 25 H 1.08994 * 109.47273 * 59.99918 * 3 2 1 26 26 H 1.09002 * 109.46751 * 299.99437 * 3 2 1 27 27 H 0.96998 * 120.00324 * 180.02562 * 8 7 5 28 28 H 1.07997 * 124.15581 * 359.97438 * 16 15 13 29 29 H 1.08000 * 127.26593 * 180.12966 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1898 1.5596 1.1789 6 1 5.0130 0.8942 1.3936 7 6 3.8258 2.5350 2.1003 8 7 2.7913 3.3092 1.8632 9 14 4.8077 2.7446 3.6756 10 1 6.2161 3.0753 3.3406 11 1 4.2201 3.8441 4.4825 12 1 4.7678 1.4816 4.4555 13 6 4.1784 1.3275 -1.1624 14 8 3.5736 1.3180 -2.2174 15 6 5.6496 1.2131 -1.1541 16 6 6.3820 0.9788 -2.3186 17 6 7.7073 0.9171 -2.0703 18 16 7.8675 1.1529 -0.3766 19 7 6.3486 1.3193 -0.0553 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6765 1.9564 0.8899 26 1 1.6766 1.9563 -0.8901 27 1 2.5375 3.9900 2.5059 28 1 5.9427 0.8643 -3.2985 29 1 8.4994 0.7495 -2.7850 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705402931.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:48 Heat of formation + Delta-G solvation = 14.286162 kcal Electronic energy + Delta-G solvation = -15300.216474 eV Core-core repulsion = 12736.701392 eV Total energy + Delta-G solvation = -2563.515082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46172 -37.37479 -35.07336 -32.82441 -31.44839 -30.56529 -26.46446 -25.43249 -23.93922 -21.27406 -20.05300 -19.08940 -17.69896 -17.43766 -15.66485 -14.84542 -14.52948 -14.30541 -14.07368 -13.45859 -13.18003 -12.78132 -12.64476 -12.21582 -11.50556 -11.44290 -11.22567 -10.98363 -10.88326 -10.63015 -10.51430 -10.28445 -9.74841 -9.72085 -9.20568 -9.00684 -8.53811 -8.13733 -7.39172 -6.31242 -4.08710 1.34962 2.11888 2.59587 2.65247 3.19494 3.22597 3.26491 4.11050 4.39220 4.68591 5.05952 5.38571 5.80032 5.83154 5.86191 5.95845 6.12495 6.31927 6.42751 6.54961 6.56621 6.70660 6.84616 7.11886 7.23399 7.42849 7.66316 8.01734 8.49468 9.07201 9.43311 9.87079 10.67001 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.012129 C = 0.007885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.223675 B = 2307.905609 C = 3550.258896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.414 5.414 5 C -0.300 4.300 6 H 0.110 0.890 7 C 0.043 3.957 8 N -0.869 5.869 9 Si 0.923 3.077 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.528 3.472 14 O -0.599 6.599 15 C 0.075 3.925 16 C -0.138 4.138 17 C -0.292 4.292 18 S 0.345 5.655 19 N -0.450 5.450 20 H 0.044 0.956 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.120 0.880 26 H 0.053 0.947 27 H 0.271 0.729 28 H 0.161 0.839 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -4.025 -1.606 7.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.174 4.174 3 C -0.013 4.013 4 N -0.130 5.130 5 C -0.432 4.432 6 H 0.127 0.873 7 C -0.162 4.162 8 N -0.507 5.507 9 Si 0.749 3.251 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.313 3.687 14 O -0.484 6.484 15 C -0.100 4.100 16 C -0.173 4.173 17 C -0.440 4.440 18 S 0.501 5.499 19 N -0.280 5.280 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.179 0.821 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.022 -3.642 -0.052 7.038 hybrid contribution -0.407 0.075 -0.942 1.028 sum 5.615 -3.568 -0.994 6.727 Atomic orbital electron populations 1.21638 0.96390 1.00406 1.01501 1.21854 0.94929 0.99394 1.01178 1.21722 0.80672 0.94512 1.04413 1.43418 1.05128 1.59542 1.04943 1.19872 1.13938 1.15608 0.93815 0.87280 1.25584 0.96079 0.94544 1.00023 1.69679 1.24673 1.19789 1.36591 0.86064 0.80269 0.78031 0.80744 1.19471 1.20983 1.19754 1.17681 0.83880 0.82543 0.84559 1.90626 1.68310 1.58272 1.31233 1.21399 0.97561 1.03666 0.87354 1.21414 0.92165 1.03174 1.00503 1.26890 1.00466 1.11070 1.05588 1.80716 1.11797 1.58945 0.98486 1.73896 1.03669 1.21469 1.28934 0.93670 0.92845 0.93111 0.93112 0.92359 0.86237 0.92882 0.91872 0.82149 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.04 15 2 C -0.13 -2.81 6.22 -26.73 -0.17 -2.98 15 3 C 0.11 2.68 4.89 -4.04 -0.02 2.66 15 4 N -0.41 -10.88 2.52 -115.98 -0.29 -11.17 15 5 C -0.30 -7.88 7.64 -15.00 -0.11 -7.99 15 6 H 0.11 2.85 5.97 -52.48 -0.31 2.54 15 7 C 0.04 1.12 5.34 -17.46 -0.09 1.03 15 8 N -0.87 -23.23 10.93 55.50 0.61 -22.62 15 9 Si 0.92 20.34 29.55 -169.99 -5.02 15.32 15 10 H -0.27 -5.97 7.11 56.52 0.40 -5.56 15 11 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 13 C 0.53 13.74 7.57 -12.45 -0.09 13.64 15 14 O -0.60 -16.31 16.31 5.27 0.09 -16.23 15 15 C 0.07 1.70 6.53 -84.07 -0.55 1.16 15 16 C -0.14 -2.60 9.98 -40.25 -0.40 -3.00 15 17 C -0.29 -4.46 11.40 29.57 0.34 -4.12 15 18 S 0.34 5.69 23.20 -107.50 -2.49 3.20 15 19 N -0.45 -9.89 7.63 24.88 0.19 -9.70 15 20 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.12 3.07 5.45 -51.93 -0.28 2.79 15 26 H 0.05 1.34 7.53 -51.93 -0.39 0.95 15 27 H 0.27 6.84 8.31 -40.82 -0.34 6.51 15 28 H 0.16 2.85 7.99 -52.49 -0.42 2.43 15 29 H 0.17 1.94 8.06 -52.49 -0.42 1.51 15 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -29.59 264.98 -6.75 -36.34 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -3.08 Total: 2.51 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.73 Total: -1.64 kcal Atomic # 7 Polarization: -43.99 SS G_CDS: 0.50 Total: -43.49 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -2.49 Total: 3.20 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.59 -6.75 -36.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705402931.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.623 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds