Wall clock time and date at job start Mon Mar 30 2020 04:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47010 * 2 1 4 4 N 1.46499 * 109.46901 * 179.97438 * 3 2 1 5 5 C 1.36835 * 120.00005 * 264.07447 * 4 3 2 6 6 H 1.07998 * 119.99730 * 131.96961 * 5 4 3 7 7 C 1.39057 * 120.00194 * 311.96748 * 5 4 3 8 8 N 1.31363 * 119.99716 * 359.14379 * 7 5 4 9 9 Si 1.86791 * 120.00124 * 179.13740 * 7 5 4 10 10 H 1.48496 * 109.47380 * 90.00367 * 9 7 5 11 11 H 1.48501 * 109.47380 * 210.00450 * 9 7 5 12 12 H 1.48506 * 109.47217 * 329.99813 * 9 7 5 13 13 C 1.34780 * 119.99820 * 84.07604 * 4 3 2 14 14 O 1.21677 * 120.00337 * 3.80867 * 13 4 3 15 15 C 1.46964 * 119.99467 * 183.80427 * 13 4 3 16 16 C 1.38504 * 127.99778 * 175.48150 * 15 13 4 17 17 C 1.37544 * 111.24491 * 180.26389 * 16 15 13 18 18 N 1.29580 * 117.95609 * 359.97438 * 17 16 15 19 19 S 1.56304 * 110.39730 * 0.02562 * 18 17 16 20 20 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47453 * 299.99936 * 1 2 3 22 22 H 1.09007 * 109.47164 * 60.00020 * 1 2 3 23 23 H 1.09001 * 109.47453 * 240.00064 * 2 1 3 24 24 H 1.08995 * 109.47529 * 119.99805 * 2 1 3 25 25 H 1.09001 * 109.46960 * 59.99762 * 3 2 1 26 26 H 1.09002 * 109.46704 * 299.99857 * 3 2 1 27 27 H 0.96996 * 119.99753 * 180.02562 * 8 7 5 28 28 H 1.08000 * 124.37782 * 0.23559 * 16 15 13 29 29 H 1.07999 * 121.02060 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1887 1.5651 1.1796 6 1 5.0002 0.8894 1.4059 7 6 3.8386 2.5595 2.0863 8 7 2.8625 3.3920 1.8036 9 14 4.7560 2.7115 3.7062 10 1 5.9160 3.6226 3.5346 11 1 3.8444 3.2607 4.7419 12 1 5.2371 1.3721 4.1303 13 6 4.1793 1.3219 -1.1601 14 8 3.5734 1.2827 -2.2145 15 6 5.6465 1.2378 -1.1521 16 6 6.4944 1.0268 -2.2267 17 6 7.8102 1.0044 -1.8266 18 7 8.0652 1.1749 -0.5676 19 16 6.7388 1.3751 0.2347 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 2.6185 4.0859 2.4359 28 1 6.1650 0.8962 -3.2469 29 1 8.6062 0.8496 -2.5398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705427085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:41 Heat of formation + Delta-G solvation = -0.030280 kcal Electronic energy + Delta-G solvation = -15223.072969 eV Core-core repulsion = 12658.937080 eV Total energy + Delta-G solvation = -2564.135889 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.87028 -38.01347 -35.17317 -33.06658 -31.56585 -30.44525 -26.38695 -25.54091 -24.00691 -21.51023 -20.14123 -19.22972 -17.91446 -16.78964 -15.74906 -14.89769 -14.82932 -14.23888 -14.17165 -13.73627 -13.36775 -12.79136 -12.58831 -12.35967 -11.69398 -11.63224 -11.40231 -11.10335 -10.99034 -10.55199 -10.49206 -10.33777 -9.85341 -9.74916 -9.13909 -8.82045 -8.75624 -8.02740 -7.60315 -6.61836 -4.50168 1.20363 2.26531 2.84440 2.96234 3.04057 3.09461 3.11508 3.87056 4.21572 4.54787 4.76582 5.62494 5.72117 5.74407 5.78996 5.95887 6.11275 6.36900 6.46853 6.50086 6.58807 6.61042 6.75512 7.03261 7.07138 7.30370 7.36938 7.77591 8.08736 8.75755 9.23584 9.68265 10.35854 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.012891 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.261160 B = 2171.488700 C = 3405.982994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.119 3.881 4 N -0.426 5.426 5 C -0.347 4.347 6 H 0.095 0.905 7 C 0.063 3.937 8 N -0.845 5.845 9 Si 0.906 3.094 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.259 1.259 13 C 0.542 3.458 14 O -0.590 6.590 15 C -0.218 4.218 16 C -0.161 4.161 17 C 0.048 3.952 18 N -0.594 5.594 19 S 0.467 5.533 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.278 0.722 28 H 0.160 0.840 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -3.090 0.535 3.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C -0.004 4.004 4 N -0.143 5.143 5 C -0.482 4.482 6 H 0.111 0.889 7 C -0.148 4.148 8 N -0.478 5.478 9 Si 0.730 3.270 10 H -0.190 1.190 11 H -0.200 1.200 12 H -0.183 1.183 13 C 0.330 3.670 14 O -0.476 6.476 15 C -0.352 4.352 16 C -0.197 4.197 17 C -0.143 4.143 18 N -0.422 5.422 19 S 0.625 5.375 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.128 0.872 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.177 0.823 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.093 -2.693 2.087 3.998 hybrid contribution 0.038 -0.082 -1.104 1.107 sum 2.131 -2.774 0.984 3.634 Atomic orbital electron populations 1.21643 0.96340 1.00526 1.01496 1.21875 0.94981 0.99306 1.01391 1.21542 0.80476 0.94511 1.03873 1.43252 1.05203 1.61424 1.04424 1.19356 1.16986 1.15526 0.96290 0.88852 1.25587 0.95654 0.93638 0.99897 1.69732 1.25958 1.15686 1.36469 0.86206 0.79964 0.79984 0.80797 1.19013 1.20045 1.18305 1.17143 0.83949 0.81419 0.84497 1.90656 1.68754 1.57091 1.31145 1.26890 1.00092 1.08923 0.99283 1.21878 0.91828 1.05299 1.00665 1.21884 0.96279 1.04024 0.92075 1.72032 1.34881 1.23445 1.11860 1.82804 0.85864 1.56175 1.12622 0.93579 0.92873 0.93076 0.92880 0.92246 0.87200 0.92626 0.91159 0.82284 0.82410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.91 15 2 C -0.14 -2.68 6.21 -26.73 -0.17 -2.85 15 3 C 0.12 2.72 4.85 -4.04 -0.02 2.70 15 4 N -0.43 -10.42 2.49 -116.19 -0.29 -10.71 15 5 C -0.35 -8.22 7.18 -15.02 -0.11 -8.33 15 6 H 0.09 2.12 5.23 -33.41 -0.17 1.94 15 7 C 0.06 1.47 5.28 -17.45 -0.09 1.38 15 8 N -0.84 -20.64 11.17 55.50 0.62 -20.02 15 9 Si 0.91 17.90 29.55 -169.99 -5.02 12.88 15 10 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 11 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 12 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 13 C 0.54 13.50 7.57 -12.72 -0.10 13.40 15 14 O -0.59 -15.81 16.62 5.21 0.09 -15.72 15 15 C -0.22 -4.83 6.54 -35.95 -0.23 -5.06 15 16 C -0.16 -3.10 10.40 -39.74 -0.41 -3.51 15 17 C 0.05 0.86 11.14 -18.75 -0.21 0.65 15 18 N -0.59 -11.62 11.29 21.68 0.24 -11.37 15 19 S 0.47 9.48 19.11 -107.50 -2.05 7.43 15 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.05 0.80 8.14 -51.92 -0.42 0.38 15 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.06 1.16 8.14 -51.93 -0.42 0.73 15 25 H 0.11 2.61 5.68 -51.93 -0.30 2.31 15 26 H 0.06 1.33 7.55 -51.93 -0.39 0.94 15 27 H 0.28 6.35 8.31 -40.82 -0.34 6.01 15 28 H 0.16 2.78 8.06 -52.49 -0.42 2.36 15 29 H 0.16 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -27.30 264.25 -6.36 -33.66 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.96 Total: 3.40 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -0.97 Total: -3.54 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.58 Total: -42.10 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.09 Total: -15.72 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.02 Total: 12.88 kcal Atomic # 16 Polarization: 9.48 SS G_CDS: -2.05 Total: 7.43 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.30 -6.36 -33.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705427085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.633 kcal (2) G-P(sol) polarization free energy of solvation -27.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds