Wall clock time and date at job start Mon Mar 30 2020 04:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47010 * 2 1 4 4 N 1.46499 * 109.46901 * 179.97438 * 3 2 1 5 5 C 1.36835 * 120.00005 * 264.07447 * 4 3 2 6 6 H 1.07998 * 119.99730 * 131.96961 * 5 4 3 7 7 C 1.39057 * 120.00194 * 311.96748 * 5 4 3 8 8 N 1.31363 * 119.99716 * 359.14379 * 7 5 4 9 9 Si 1.86791 * 120.00124 * 179.13740 * 7 5 4 10 10 H 1.48496 * 109.47380 * 90.00367 * 9 7 5 11 11 H 1.48501 * 109.47380 * 210.00450 * 9 7 5 12 12 H 1.48506 * 109.47217 * 329.99813 * 9 7 5 13 13 C 1.34780 * 119.99820 * 84.07604 * 4 3 2 14 14 O 1.21677 * 120.00337 * 3.80867 * 13 4 3 15 15 C 1.46964 * 119.99467 * 183.80427 * 13 4 3 16 16 C 1.38504 * 127.99778 * 175.48150 * 15 13 4 17 17 C 1.37544 * 111.24491 * 180.26389 * 16 15 13 18 18 N 1.29580 * 117.95609 * 359.97438 * 17 16 15 19 19 S 1.56304 * 110.39730 * 0.02562 * 18 17 16 20 20 H 1.08996 * 109.47189 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47453 * 299.99936 * 1 2 3 22 22 H 1.09007 * 109.47164 * 60.00020 * 1 2 3 23 23 H 1.09001 * 109.47453 * 240.00064 * 2 1 3 24 24 H 1.08995 * 109.47529 * 119.99805 * 2 1 3 25 25 H 1.09001 * 109.46960 * 59.99762 * 3 2 1 26 26 H 1.09002 * 109.46704 * 299.99857 * 3 2 1 27 27 H 0.96996 * 119.99753 * 180.02562 * 8 7 5 28 28 H 1.08000 * 124.37782 * 0.23559 * 16 15 13 29 29 H 1.07999 * 121.02060 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1887 1.5651 1.1796 6 1 5.0002 0.8894 1.4059 7 6 3.8386 2.5595 2.0863 8 7 2.8625 3.3920 1.8036 9 14 4.7560 2.7115 3.7062 10 1 5.9160 3.6226 3.5346 11 1 3.8444 3.2607 4.7419 12 1 5.2371 1.3721 4.1303 13 6 4.1793 1.3219 -1.1601 14 8 3.5734 1.2827 -2.2145 15 6 5.6465 1.2378 -1.1521 16 6 6.4944 1.0268 -2.2267 17 6 7.8102 1.0044 -1.8266 18 7 8.0652 1.1749 -0.5676 19 16 6.7388 1.3751 0.2347 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9564 -0.8900 27 1 2.6185 4.0859 2.4359 28 1 6.1650 0.8962 -3.2469 29 1 8.6062 0.8496 -2.5398 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705427085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:34 Heat of formation + Delta-G solvation = -16.066239 kcal Electronic energy + Delta-G solvation = -15223.768341 eV Core-core repulsion = 12658.937080 eV Total energy + Delta-G solvation = -2564.831261 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -40.65911 -39.62604 -37.02899 -34.70531 -33.36612 -32.04342 -28.02357 -27.30426 -25.62780 -23.09773 -21.82936 -20.97766 -19.59305 -18.50851 -17.43836 -16.67043 -16.55538 -15.90664 -15.79239 -15.30322 -14.99856 -14.45503 -14.11855 -13.98648 -13.36154 -13.31671 -13.02537 -12.66079 -12.58364 -12.08698 -12.08173 -11.93483 -11.52820 -11.37155 -10.91338 -10.62031 -10.46282 -9.58036 -9.45253 -8.40122 -6.35485 -0.42593 0.64955 1.29274 1.42858 1.47249 1.52529 1.59015 2.21711 2.39711 2.81638 2.97976 4.05641 4.20744 4.25929 4.33033 4.42282 4.56164 4.79021 4.95619 4.97547 5.10009 5.10525 5.21569 5.31035 5.37914 5.56724 5.79760 5.96112 6.26801 6.93741 7.37491 7.83241 8.59480 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.012891 C = 0.008219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.261160 B = 2171.488700 C = 3405.982994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.119 3.881 4 N -0.434 5.434 5 C -0.362 4.362 6 H 0.103 0.897 7 C 0.028 3.972 8 N -0.877 5.877 9 Si 0.959 3.041 10 H -0.262 1.262 11 H -0.271 1.271 12 H -0.246 1.246 13 C 0.527 3.473 14 O -0.624 6.624 15 C -0.259 4.259 16 C -0.145 4.145 17 C 0.060 3.940 18 N -0.594 5.594 19 S 0.464 5.536 20 H 0.071 0.929 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.059 0.941 25 H 0.101 0.899 26 H 0.033 0.967 27 H 0.281 0.719 28 H 0.176 0.824 29 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -3.751 0.953 4.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C -0.004 4.004 4 N -0.151 5.151 5 C -0.495 4.495 6 H 0.120 0.880 7 C -0.179 4.179 8 N -0.511 5.511 9 Si 0.780 3.220 10 H -0.187 1.187 11 H -0.196 1.196 12 H -0.169 1.169 13 C 0.317 3.683 14 O -0.513 6.513 15 C -0.392 4.392 16 C -0.181 4.181 17 C -0.131 4.131 18 N -0.422 5.422 19 S 0.623 5.377 20 H 0.090 0.910 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.193 0.807 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.442 -3.359 2.542 5.440 hybrid contribution -0.304 0.118 -1.342 1.381 sum 3.138 -3.241 1.200 4.668 Atomic orbital electron populations 1.21600 0.93386 1.02383 1.01895 1.21772 0.97524 0.96707 1.00577 1.21539 0.80302 0.96348 1.02178 1.43509 1.05785 1.60970 1.04820 1.19665 1.17557 1.16210 0.96096 0.87985 1.26324 0.96030 0.92987 1.02584 1.69826 1.27233 1.16378 1.37710 0.85413 0.78908 0.80554 0.77156 1.18678 1.19607 1.16927 1.17579 0.85304 0.81236 0.84177 1.90605 1.69851 1.58797 1.32033 1.26826 0.99169 1.11799 1.01431 1.22250 0.92054 1.02991 1.00821 1.22425 0.96717 1.01852 0.92101 1.72149 1.33656 1.23650 1.12731 1.82647 0.85747 1.56726 1.12580 0.90959 0.92196 0.92982 0.94324 0.92226 0.88134 0.94806 0.90879 0.80679 0.77788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.91 71.98 0.71 -3.49 15 2 C -0.13 -5.04 6.21 30.60 0.19 -4.85 15 3 C 0.12 5.63 4.85 86.38 0.42 6.05 15 4 N -0.43 -21.76 2.49 -639.75 -1.59 -23.36 15 5 C -0.36 -17.27 7.18 84.11 0.60 -16.67 15 6 H 0.10 4.61 5.23 -15.04 -0.08 4.53 15 7 C 0.03 1.32 5.28 84.96 0.45 1.77 15 8 N -0.88 -43.45 11.17 21.68 0.24 -43.21 15 9 Si 0.96 35.85 29.55 68.60 2.03 37.88 15 10 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 11 H -0.27 -9.90 7.11 99.48 0.71 -9.20 15 12 H -0.25 -8.62 7.11 99.48 0.71 -7.92 15 13 C 0.53 26.86 7.57 86.53 0.66 27.52 15 14 O -0.62 -34.37 16.62 -4.27 -0.07 -34.44 15 15 C -0.26 -11.36 6.54 24.62 0.16 -11.20 15 16 C -0.14 -5.27 10.40 22.17 0.23 -5.04 15 17 C 0.06 1.92 11.14 84.86 0.95 2.87 15 18 N -0.59 -21.58 11.29 -85.33 -0.96 -22.54 15 19 S 0.46 18.27 19.11 -56.49 -1.08 17.19 15 20 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.05 1.60 8.14 -2.38 -0.02 1.58 15 23 H 0.04 1.62 8.14 -2.39 -0.02 1.60 15 24 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 25 H 0.10 4.92 5.68 -2.39 -0.01 4.91 15 26 H 0.03 1.69 7.55 -2.39 -0.02 1.68 15 27 H 0.28 12.98 8.31 -92.71 -0.77 12.21 15 28 H 0.18 5.73 8.06 -2.91 -0.02 5.71 15 29 H 0.21 4.61 8.06 -2.91 -0.02 4.58 15 Total: -1.00 -58.86 264.25 4.03 -54.84 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.10 Total: 16.69 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.37 Total: -3.05 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -2.31 Total: -89.11 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.07 Total: -34.44 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Atomic # 16 Polarization: 18.27 SS G_CDS: -1.08 Total: 17.19 kcal Total: -58.86 4.03 -54.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705427085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.770 kcal (2) G-P(sol) polarization free energy of solvation -58.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds