Wall clock time and date at job start Mon Mar 30 2020 04:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47260 * 2 1 4 4 N 1.46494 * 109.47533 * 120.00337 * 2 1 3 5 5 C 1.36831 * 120.00258 * 246.99745 * 4 2 1 6 6 H 1.07999 * 120.00041 * 38.62499 * 5 4 2 7 7 C 1.39057 * 120.00023 * 218.62965 * 5 4 2 8 8 N 1.31360 * 120.00132 * 17.19266 * 7 5 4 9 9 Si 1.86805 * 119.99728 * 197.19652 * 7 5 4 10 10 H 1.48490 * 109.47074 * 90.00194 * 9 7 5 11 11 H 1.48501 * 109.46859 * 210.00091 * 9 7 5 12 12 H 1.48493 * 109.46987 * 329.99441 * 9 7 5 13 13 C 1.34781 * 119.99833 * 66.99320 * 4 2 1 14 14 O 1.21677 * 119.99840 * 185.82939 * 13 4 2 15 15 C 1.46955 * 120.00255 * 5.83073 * 13 4 2 16 16 C 1.38498 * 128.00548 * 186.00162 * 15 13 4 17 17 C 1.37543 * 111.24650 * 180.26472 * 16 15 13 18 18 N 1.29568 * 117.95887 * 359.97438 * 17 16 15 19 19 S 1.56309 * 110.39882 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.46715 * 305.94409 * 1 2 3 21 21 H 1.08998 * 109.47340 * 65.94097 * 1 2 3 22 22 H 1.08995 * 109.47133 * 185.94610 * 1 2 3 23 23 H 1.09000 * 109.46771 * 240.00196 * 2 1 3 24 24 H 1.09000 * 109.47203 * 181.20380 * 3 2 1 25 25 H 1.09002 * 109.47180 * 301.20524 * 3 2 1 26 26 H 1.09003 * 109.47032 * 61.20269 * 3 2 1 27 27 H 0.96996 * 120.00187 * 179.97438 * 8 7 5 28 28 H 1.08007 * 124.37261 * 0.24654 * 16 15 13 29 29 H 1.08003 * 121.01627 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.6831 0.0086 2.1664 6 1 2.3624 1.0059 2.4289 7 6 3.7716 -0.5649 2.8145 8 7 4.3733 -1.6081 2.2900 9 14 4.3780 0.1483 4.4310 10 1 3.6742 -0.5132 5.5588 11 1 5.8397 -0.0821 4.5563 12 1 4.1025 1.6071 4.4627 13 6 1.8130 -2.0148 1.3407 14 8 2.1232 -2.5688 2.3787 15 6 1.2144 -2.7896 0.2448 16 6 0.8273 -4.1193 0.2528 17 6 0.3106 -4.4954 -0.9652 18 7 0.2581 -3.6041 -1.9041 19 16 0.8281 -2.2410 -1.3938 20 1 -0.3633 0.6033 0.8320 21 1 -0.3634 0.4189 -0.9384 22 1 -0.3633 -1.0221 0.1065 23 1 1.8933 -0.5138 -0.8900 24 1 3.1298 1.4425 -0.0216 25 1 1.6592 1.9625 -0.8790 26 1 1.6944 1.9500 0.9006 27 1 5.1328 -2.0079 2.7419 28 1 0.9195 -4.7762 1.1053 29 1 -0.0404 -5.5028 -1.1337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705429893.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:44 Heat of formation + Delta-G solvation = 28.559209 kcal Electronic energy + Delta-G solvation = -15634.433443 eV Core-core repulsion = 13071.537287 eV Total energy + Delta-G solvation = -2562.896156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.89662 -38.20210 -35.22523 -32.73122 -30.57415 -30.08109 -27.26178 -25.56679 -24.31146 -21.54204 -20.70872 -18.74229 -17.97176 -16.22462 -16.11455 -15.01128 -14.68334 -14.22617 -13.91649 -13.89177 -12.98120 -12.57696 -12.49969 -12.13235 -11.89094 -11.70899 -11.25160 -10.93915 -10.85298 -10.72895 -10.60988 -10.33768 -10.26281 -9.70974 -8.98670 -8.81371 -8.28380 -8.02874 -7.26788 -6.26266 -3.94062 1.10225 2.00359 2.59542 2.92392 3.25842 3.31662 3.35111 4.13978 4.60027 4.69685 5.18088 5.42104 5.44808 5.64163 5.68620 5.82207 5.90039 6.09141 6.23421 6.29256 6.40609 6.44179 6.55640 6.75179 6.89726 7.16363 7.46311 8.07006 8.84727 9.02407 9.46000 10.13991 10.80746 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.010042 C = 0.008256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.856996 B = 2787.667127 C = 3390.500752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.117 3.883 3 C -0.131 4.131 4 N -0.431 5.431 5 C -0.327 4.327 6 H 0.091 0.909 7 C 0.060 3.940 8 N -0.813 5.813 9 Si 0.918 3.082 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.271 1.271 13 C 0.527 3.473 14 O -0.522 6.522 15 C -0.203 4.203 16 C -0.166 4.166 17 C 0.061 3.939 18 N -0.578 5.578 19 S 0.389 5.611 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.269 0.731 28 H 0.163 0.837 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 2.044 -5.587 8.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.010 3.990 3 C -0.189 4.189 4 N -0.153 5.153 5 C -0.455 4.455 6 H 0.109 0.891 7 C -0.152 4.152 8 N -0.447 5.447 9 Si 0.744 3.256 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.314 3.686 14 O -0.400 6.400 15 C -0.337 4.337 16 C -0.201 4.201 17 C -0.131 4.131 18 N -0.405 5.405 19 S 0.544 5.456 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.181 0.819 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.396 2.759 -6.898 9.182 hybrid contribution 0.496 -1.299 1.998 2.434 sum -4.900 1.460 -4.900 7.082 Atomic orbital electron populations 1.22556 0.96336 1.02288 1.02079 1.21278 0.93386 0.95124 0.89215 1.21777 1.02310 0.93846 1.00967 1.43341 1.49364 1.06054 1.16545 1.19149 1.09939 1.01168 1.15226 0.89147 1.25286 0.94899 0.95985 0.99057 1.69853 1.17929 1.20089 1.36838 0.86106 0.77529 0.78890 0.83046 1.20211 1.21144 1.19621 1.16296 0.83857 0.82697 0.85713 1.90637 1.52248 1.69039 1.28090 1.27632 1.06047 0.99256 1.00746 1.21875 1.03470 0.95227 0.99491 1.22021 1.02082 1.00202 0.88829 1.72050 1.26201 1.07706 1.34568 1.82096 1.50009 1.12127 1.01412 0.91828 0.91761 0.92509 0.92501 0.91411 0.93205 0.91692 0.92117 0.81936 0.81836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 7.86 37.16 0.29 -2.54 15 2 C 0.12 2.22 2.82 -67.93 -0.19 2.03 15 3 C -0.13 -2.20 8.19 37.16 0.30 -1.89 15 4 N -0.43 -10.50 2.66 -109.11 -0.29 -10.79 15 5 C -0.33 -8.44 7.98 -15.02 -0.12 -8.56 15 6 H 0.09 2.18 6.52 -52.49 -0.34 1.84 15 7 C 0.06 1.61 4.43 -17.45 -0.08 1.53 15 8 N -0.81 -23.46 11.30 55.50 0.63 -22.83 15 9 Si 0.92 20.91 29.59 -169.99 -5.03 15.88 15 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 13 C 0.53 13.67 6.50 -12.73 -0.08 13.59 15 14 O -0.52 -15.56 14.48 5.21 0.08 -15.49 15 15 C -0.20 -4.40 5.56 -35.96 -0.20 -4.60 15 16 C -0.17 -3.21 10.41 -39.74 -0.41 -3.62 15 17 C 0.06 1.04 11.14 -18.76 -0.21 0.84 15 18 N -0.58 -10.52 11.29 21.67 0.24 -10.27 15 19 S 0.39 6.99 16.50 -107.50 -1.77 5.22 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 22 H 0.06 0.99 5.09 -42.74 -0.22 0.77 15 23 H 0.06 1.07 5.17 -29.05 -0.15 0.92 15 24 H 0.07 1.22 7.97 -51.93 -0.41 0.81 15 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 15 26 H 0.06 1.09 6.85 -51.93 -0.36 0.74 15 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 28 H 0.16 2.99 8.06 -52.48 -0.42 2.56 15 29 H 0.16 2.18 8.06 -52.48 -0.42 1.76 15 LS Contribution 252.47 15.07 3.80 3.80 Total: -1.00 -31.76 252.47 -5.77 -37.53 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -2.73 Total: 0.18 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.70 Total: -3.23 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.58 Total: -43.89 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.49 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.77 Total: 5.22 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.76 -5.77 -37.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705429893.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.089 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds