Wall clock time and date at job start Mon Mar 30 2020 03:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33418 * 125.15200 * 2 1 4 4 C 1.38771 * 114.87762 * 179.75226 * 3 2 1 5 5 N 1.40792 * 122.60775 * 180.22834 * 4 3 2 6 6 C 1.46498 * 119.99612 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46807 * 179.97438 * 6 5 4 8 8 O 1.21299 * 119.99984 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00211 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00178 * 179.97438 * 9 7 6 11 11 H 1.07996 * 119.99876 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99690 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00383 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99673 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47132 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46915 * 120.00536 * 14 12 10 17 17 H 1.48501 * 109.47185 * 240.00383 * 14 12 10 18 18 C 1.33742 * 114.78066 * 0.24723 * 4 3 2 19 19 S 1.75855 * 125.15623 * 180.13442 * 2 1 3 20 20 H 1.09002 * 109.47097 * 90.00483 * 1 2 3 21 21 H 1.09005 * 109.47249 * 210.00084 * 1 2 3 22 22 H 1.09005 * 109.47432 * 329.99961 * 1 2 3 23 23 H 1.08002 * 122.56380 * 0.02721 * 3 2 1 24 24 H 0.97003 * 120.00096 * 359.97438 * 5 4 3 25 25 H 1.08997 * 109.47000 * 299.99148 * 6 5 4 26 26 H 1.08999 * 109.47647 * 60.00148 * 6 5 4 27 27 H 0.97000 * 119.99275 * 0.02562 * 9 7 6 28 28 H 0.97004 * 120.00155 * 180.02562 * 13 12 10 29 29 H 1.08001 * 125.19475 * 179.97438 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2751 1.0909 0.0000 4 6 3.6406 0.8434 0.0054 5 7 4.5986 1.8750 0.0110 6 6 6.0267 1.5483 0.0160 7 6 6.8332 2.8214 0.0208 8 8 6.2703 3.8959 0.0195 9 7 8.1798 2.7661 0.0263 10 6 8.9135 3.9242 0.0301 11 1 8.4123 4.8809 0.0290 12 6 10.3018 3.8671 0.0364 13 7 10.9116 2.7030 0.0383 14 14 11.3014 5.4451 0.0423 15 1 10.3836 6.6125 0.0397 16 1 12.1522 5.4876 1.2587 17 1 12.1632 5.4897 -1.1663 18 6 3.9756 -0.4514 0.0046 19 16 2.5196 -1.4378 -0.0034 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 1.8656 2.0902 0.0004 24 1 4.3131 2.8021 0.0107 25 1 6.2628 0.9650 0.9060 26 1 6.2699 0.9680 -0.8740 27 1 8.6298 1.9068 0.0269 28 1 11.8808 2.6632 0.0430 29 1 4.9860 -0.8330 0.0079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710775034.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:59 Heat of formation + Delta-G solvation = -8.121800 kcal Electronic energy + Delta-G solvation = -14096.736453 eV Core-core repulsion = 11532.249689 eV Total energy + Delta-G solvation = -2564.486764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.89080 -37.90110 -34.50002 -33.80043 -31.40047 -30.83274 -27.18058 -26.51060 -24.44924 -21.60161 -19.51710 -19.01127 -18.14539 -17.40625 -15.94481 -15.24247 -14.88150 -14.77179 -14.23443 -13.95282 -13.82270 -13.42398 -12.99131 -12.72864 -12.24157 -11.93390 -11.77418 -11.77194 -11.60296 -11.14417 -10.66318 -10.40861 -10.31798 -9.65029 -9.44247 -8.60470 -8.44871 -8.09756 -7.02625 -6.51534 -3.93237 1.22477 1.83122 2.25726 3.09187 3.11582 3.22199 3.29078 3.75694 3.80610 4.15135 4.87200 4.93455 5.16878 5.20025 5.37649 5.40112 5.62269 5.79175 5.82106 5.96057 6.09172 6.12543 6.33682 6.38994 7.46374 7.52806 7.94276 8.19661 8.46625 9.05576 9.40176 9.88722 10.65617 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.070192 B = 0.004104 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.812937 B = 6820.509698 C = 7198.871473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.158 4.158 3 C -0.165 4.165 4 C 0.202 3.798 5 N -0.722 5.722 6 C 0.120 3.880 7 C 0.431 3.569 8 O -0.595 6.595 9 N -0.553 5.553 10 C -0.303 4.303 11 H 0.105 0.895 12 C 0.024 3.976 13 N -0.896 5.896 14 Si 0.932 3.068 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.280 1.280 18 C -0.327 4.327 19 S 0.079 5.921 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.138 0.862 24 H 0.410 0.590 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.395 0.605 28 H 0.273 0.727 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.436 -7.991 -0.074 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.276 4.276 3 C -0.199 4.199 4 C 0.090 3.910 5 N -0.357 5.357 6 C -0.009 4.009 7 C 0.217 3.783 8 O -0.481 6.481 9 N -0.188 5.188 10 C -0.433 4.433 11 H 0.123 0.877 12 C -0.178 4.178 13 N -0.537 5.537 14 Si 0.759 3.241 15 H -0.192 1.192 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.469 4.469 19 S 0.337 5.663 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.093 0.907 23 H 0.156 0.844 24 H 0.248 0.752 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.229 0.771 28 H 0.083 0.917 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.647 -8.891 -0.078 17.135 hybrid contribution 1.300 1.992 0.004 2.379 sum -13.347 -6.898 -0.074 15.025 Atomic orbital electron populations 1.20334 0.87992 1.03014 1.02645 1.24224 0.99596 0.95974 1.07766 1.19704 0.91607 0.99730 1.08849 1.16740 0.88763 0.88415 0.97053 1.44308 1.02376 1.06735 1.82279 1.20840 0.81536 0.96823 1.01664 1.19786 0.83431 0.89900 0.85231 1.90499 1.70407 1.30274 1.56932 1.41813 1.04025 1.09885 1.63057 1.19775 0.88266 0.87251 1.47985 0.87699 1.25318 0.96982 0.98617 0.96901 1.69619 1.10311 1.24042 1.49720 0.85757 0.79339 0.81181 0.77815 1.19156 1.20617 1.20612 1.24402 1.01457 0.94630 1.26404 1.83829 0.96591 1.09048 1.76794 0.90781 0.91332 0.90660 0.84393 0.75215 0.90990 0.91001 0.77148 0.91693 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.37 36.00 0.37 -0.30 15 2 C -0.16 -1.88 6.51 -35.99 -0.23 -2.11 15 3 C -0.16 -2.24 10.01 -41.07 -0.41 -2.65 15 4 C 0.20 3.16 6.62 -85.12 -0.56 2.60 15 5 N -0.72 -12.63 5.77 -60.86 -0.35 -12.98 15 6 C 0.12 2.19 5.63 -5.19 -0.03 2.16 15 7 C 0.43 10.09 7.85 -10.98 -0.09 10.00 15 8 O -0.59 -15.82 15.24 5.54 0.08 -15.73 15 9 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 15 10 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 15 11 H 0.11 3.03 7.16 -52.49 -0.38 2.65 15 12 C 0.02 0.64 5.50 -17.47 -0.10 0.55 15 13 N -0.90 -24.02 13.05 55.50 0.72 -23.29 15 14 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 15 15 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 18 C -0.33 -4.78 10.41 29.16 0.30 -4.48 15 19 S 0.08 0.96 23.32 -107.50 -2.51 -1.54 15 20 H 0.07 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.07 0.50 8.14 -51.93 -0.42 0.07 15 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.14 1.67 8.06 -52.49 -0.42 1.25 15 24 H 0.41 7.53 7.53 -40.82 -0.31 7.22 15 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.39 9.40 7.90 -40.82 -0.32 9.08 15 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 29 H 0.16 2.21 7.48 -52.49 -0.39 1.82 15 LS Contribution 273.25 15.07 4.12 4.12 Total: -1.00 -29.91 273.25 -6.97 -36.88 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -3.07 Total: 13.47 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.89 Total: -2.73 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.32 Total: -50.17 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.91 -6.97 -36.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710775034.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.762 kcal (2) G-P(sol) polarization free energy of solvation -29.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds