Wall clock time and date at job start Mon Mar 30 2020 03:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33418 * 125.15200 * 2 1 4 4 C 1.38771 * 114.87762 * 179.75226 * 3 2 1 5 5 N 1.40792 * 122.60775 * 180.22834 * 4 3 2 6 6 C 1.46498 * 119.99612 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46807 * 179.97438 * 6 5 4 8 8 O 1.21299 * 119.99984 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00211 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00178 * 179.97438 * 9 7 6 11 11 H 1.07996 * 119.99876 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99690 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00383 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99673 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47132 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46915 * 120.00536 * 14 12 10 17 17 H 1.48501 * 109.47185 * 240.00383 * 14 12 10 18 18 C 1.33742 * 114.78066 * 0.24723 * 4 3 2 19 19 S 1.75855 * 125.15623 * 180.13442 * 2 1 3 20 20 H 1.09002 * 109.47097 * 90.00483 * 1 2 3 21 21 H 1.09005 * 109.47249 * 210.00084 * 1 2 3 22 22 H 1.09005 * 109.47432 * 329.99961 * 1 2 3 23 23 H 1.08002 * 122.56380 * 0.02721 * 3 2 1 24 24 H 0.97003 * 120.00096 * 359.97438 * 5 4 3 25 25 H 1.08997 * 109.47000 * 299.99148 * 6 5 4 26 26 H 1.08999 * 109.47647 * 60.00148 * 6 5 4 27 27 H 0.97000 * 119.99275 * 0.02562 * 9 7 6 28 28 H 0.97004 * 120.00155 * 180.02562 * 13 12 10 29 29 H 1.08001 * 125.19475 * 179.97438 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2751 1.0909 0.0000 4 6 3.6406 0.8434 0.0054 5 7 4.5986 1.8750 0.0110 6 6 6.0267 1.5483 0.0160 7 6 6.8332 2.8214 0.0208 8 8 6.2703 3.8959 0.0195 9 7 8.1798 2.7661 0.0263 10 6 8.9135 3.9242 0.0301 11 1 8.4123 4.8809 0.0290 12 6 10.3018 3.8671 0.0364 13 7 10.9116 2.7030 0.0383 14 14 11.3014 5.4451 0.0423 15 1 10.3836 6.6125 0.0397 16 1 12.1522 5.4876 1.2587 17 1 12.1632 5.4897 -1.1663 18 6 3.9756 -0.4514 0.0046 19 16 2.5196 -1.4378 -0.0034 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5139 23 1 1.8656 2.0902 0.0004 24 1 4.3131 2.8021 0.0107 25 1 6.2628 0.9650 0.9060 26 1 6.2699 0.9680 -0.8740 27 1 8.6298 1.9068 0.0269 28 1 11.8808 2.6632 0.0430 29 1 4.9860 -0.8330 0.0079 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710775034.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:59 Heat of formation + Delta-G solvation = -28.465659 kcal Electronic energy + Delta-G solvation = -14097.618629 eV Core-core repulsion = 11532.249689 eV Total energy + Delta-G solvation = -2565.368940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49493 -39.31208 -36.22890 -35.29311 -33.38965 -31.90731 -28.74066 -27.51515 -26.26645 -22.71779 -21.28094 -20.13489 -20.07013 -18.77558 -17.45667 -16.62702 -16.60579 -16.36268 -15.92294 -15.38456 -14.94065 -14.49204 -14.20977 -14.08614 -13.67187 -13.54071 -13.05127 -13.00800 -12.84810 -12.65368 -12.46857 -12.13255 -11.63151 -11.60131 -10.60043 -10.55830 -10.11290 -9.44489 -8.53282 -8.20011 -6.03312 0.21035 0.85523 1.18702 1.33434 1.40929 1.55058 1.89052 2.00919 2.22480 2.54221 3.13754 3.20214 3.98174 4.21169 4.35936 4.40843 4.48426 4.54508 4.66343 4.80749 5.10211 5.11205 5.26505 5.35654 5.38621 5.87759 6.28252 6.49349 6.82034 7.02551 7.43141 7.94999 8.63860 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.070192 B = 0.004104 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.812937 B = 6820.509698 C = 7198.871473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.147 4.147 3 C -0.190 4.190 4 C 0.185 3.815 5 N -0.733 5.733 6 C 0.136 3.864 7 C 0.431 3.569 8 O -0.630 6.630 9 N -0.561 5.561 10 C -0.338 4.338 11 H 0.082 0.918 12 C -0.011 4.011 13 N -0.915 5.915 14 Si 0.997 3.003 15 H -0.273 1.273 16 H -0.270 1.270 17 H -0.269 1.269 18 C -0.345 4.345 19 S 0.110 5.890 20 H 0.088 0.912 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.146 0.854 24 H 0.403 0.597 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.399 0.601 28 H 0.280 0.720 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.243 -8.872 -0.082 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.265 4.265 3 C -0.224 4.224 4 C 0.074 3.926 5 N -0.368 5.368 6 C 0.008 3.992 7 C 0.218 3.782 8 O -0.518 6.518 9 N -0.197 5.197 10 C -0.467 4.467 11 H 0.100 0.900 12 C -0.211 4.211 13 N -0.555 5.555 14 Si 0.820 3.180 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.195 1.195 18 C -0.486 4.486 19 S 0.369 5.631 20 H 0.107 0.893 21 H 0.102 0.898 22 H 0.105 0.895 23 H 0.164 0.836 24 H 0.239 0.761 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.234 0.766 28 H 0.090 0.910 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.467 -9.828 -0.086 18.326 hybrid contribution 1.449 2.176 0.005 2.615 sum -14.018 -7.652 -0.081 15.970 Atomic orbital electron populations 1.20502 0.85287 1.04379 1.03984 1.24729 1.01354 0.95205 1.05189 1.19822 0.90973 1.00859 1.10699 1.17023 0.89280 0.88226 0.98087 1.44275 1.02167 1.06911 1.83489 1.20685 0.81472 0.93901 1.03185 1.20644 0.83159 0.91230 0.83155 1.90469 1.71036 1.32321 1.57938 1.41855 1.04659 1.09475 1.63704 1.19735 0.89244 0.87324 1.50421 0.90014 1.26116 0.97337 1.01871 0.95812 1.69674 1.10957 1.25504 1.49397 0.84817 0.77660 0.77090 0.78431 1.19718 1.19472 1.19462 1.24663 1.02885 0.95001 1.26096 1.83708 0.95044 1.08386 1.75930 0.89302 0.89823 0.89455 0.83604 0.76058 0.89335 0.89347 0.76620 0.91036 0.82325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.37 71.24 0.74 -0.38 15 2 C -0.15 -3.16 6.51 24.59 0.16 -3.00 15 3 C -0.19 -4.94 10.01 21.31 0.21 -4.73 15 4 C 0.18 5.65 6.62 36.81 0.24 5.89 15 5 N -0.73 -25.65 5.77 -346.47 -2.00 -27.65 15 6 C 0.14 4.93 5.63 85.63 0.48 5.42 15 7 C 0.43 20.53 7.85 87.66 0.69 21.22 15 8 O -0.63 -34.42 15.24 -3.09 -0.05 -34.46 15 9 N -0.56 -28.64 5.29 -306.98 -1.62 -30.26 15 10 C -0.34 -19.00 9.68 84.04 0.81 -18.19 15 11 H 0.08 4.90 7.16 -2.91 -0.02 4.88 15 12 C -0.01 -0.57 5.50 84.93 0.47 -0.10 15 13 N -0.92 -48.71 13.05 21.66 0.28 -48.43 15 14 Si 1.00 42.30 29.55 68.60 2.03 44.32 15 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 18 C -0.34 -9.69 10.41 66.80 0.70 -8.99 15 19 S 0.11 2.46 23.32 -56.49 -1.32 1.14 15 20 H 0.09 1.00 8.14 -2.39 -0.02 0.98 15 21 H 0.08 0.91 8.14 -2.38 -0.02 0.89 15 22 H 0.09 1.02 8.14 -2.38 -0.02 1.00 15 23 H 0.15 3.43 8.06 -2.91 -0.02 3.41 15 24 H 0.40 15.11 7.53 -92.71 -0.70 14.41 15 25 H 0.09 2.92 8.14 -2.39 -0.02 2.90 15 26 H 0.09 2.92 8.14 -2.39 -0.02 2.90 15 27 H 0.40 19.27 7.90 -92.71 -0.73 18.53 15 28 H 0.28 13.87 8.31 -92.71 -0.77 13.10 15 29 H 0.16 4.28 7.48 -2.91 -0.02 4.26 15 Total: -1.00 -63.97 273.25 1.58 -62.39 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.24 Total: 35.81 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 4.50 Total: -2.87 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -3.34 Total: -106.34 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.05 Total: -34.46 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.32 Total: 1.14 kcal Total: -63.97 1.58 -62.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710775034.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.924 kcal (2) G-P(sol) polarization free energy of solvation -63.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds