Wall clock time and date at job start Mon Mar 30 2020 04:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31015 * 1 3 3 Si 1.86802 * 120.00300 * 2 1 4 4 H 1.48494 * 109.47290 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46480 * 299.99628 * 3 2 1 6 6 H 1.48495 * 109.47182 * 59.99670 * 3 2 1 7 7 C 1.39591 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99619 * 179.97438 * 7 2 1 9 9 N 1.36118 * 120.00393 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00113 * 180.02562 * 9 7 2 11 11 O 1.21495 * 120.00130 * 0.02562 * 10 9 7 12 12 C 1.48834 * 119.99606 * 179.97438 * 10 9 7 13 13 O 1.21434 * 120.00292 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99857 * 179.97438 * 12 10 9 15 15 C 1.48363 * 127.15706 * 0.02915 * 14 12 10 16 16 C 1.56011 * 104.97876 * 182.55553 * 15 14 12 17 17 H 1.09000 * 116.79470 * 159.05517 * 16 15 14 18 18 C 1.57079 * 99.67102 * 32.79750 * 16 15 14 19 19 C 1.49379 * 127.10528 * 180.02562 * 14 12 10 20 20 H 1.08991 * 117.06002 * 14.95642 * 19 14 12 21 21 C 1.56164 * 103.69259 * 244.98859 * 19 14 12 22 22 O 1.44117 * 105.45431 * 288.36221 * 21 19 14 23 23 H 0.96997 * 119.99984 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99205 * 0.02562 * 9 7 2 25 25 H 1.09000 * 110.37174 * 63.67071 * 15 14 12 26 26 H 1.09005 * 110.34242 * 301.41888 * 15 14 12 27 27 H 1.09002 * 112.46134 * 63.73560 * 18 16 15 28 28 H 1.08998 * 112.46080 * 191.33562 * 18 16 15 29 29 H 1.09006 * 110.15699 * 169.40336 * 21 19 14 30 30 H 1.09000 * 110.38321 * 47.44189 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7042 1.3463 0.0006 5 1 1.8855 2.3963 -1.2126 6 1 1.8855 2.3964 1.2124 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0001 9 7 1.3275 -2.3878 0.0005 10 6 2.0014 -3.5549 0.0016 11 8 3.2163 -3.5549 0.0030 12 6 1.2571 -4.8438 0.0022 13 8 0.0428 -4.8438 0.0012 14 7 1.9310 -6.0110 0.0027 15 6 3.4030 -6.1959 0.0034 16 6 3.6155 -7.7401 -0.0634 17 1 4.5847 -8.0877 -0.4211 18 6 2.3670 -8.1411 -0.9282 19 6 1.3498 -7.3871 0.0028 20 1 0.2931 -7.4791 -0.2481 21 6 1.7964 -7.9770 1.3780 22 8 3.2127 -8.2123 1.2533 23 1 -0.4850 0.8400 -0.0004 24 1 0.3575 -2.3876 -0.0002 25 1 3.8356 -5.7934 0.9193 26 1 3.8458 -5.7147 -0.8687 27 1 2.4033 -7.7193 -1.9327 28 1 2.1990 -9.2179 -0.9427 29 1 1.2738 -8.9136 1.5726 30 1 1.6014 -7.2633 2.1785 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718265844.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:11 Heat of formation + Delta-G solvation = -80.219563 kcal Electronic energy + Delta-G solvation = -17355.596160 eV Core-core repulsion = 14345.230131 eV Total energy + Delta-G solvation = -3010.366028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.00357 -38.85359 -36.99632 -34.70846 -33.93184 -31.46235 -30.28542 -29.86741 -26.08834 -25.39599 -23.31381 -21.33018 -20.65104 -18.84351 -18.19384 -17.06599 -16.74167 -15.96882 -15.52925 -15.19712 -14.61783 -14.49397 -13.90424 -13.31503 -13.18338 -12.56139 -12.52030 -12.37580 -11.86686 -11.82842 -11.68897 -11.49860 -11.31702 -11.22276 -10.51454 -10.42563 -10.32380 -9.75086 -9.61074 -8.40259 -8.24024 -8.19696 -6.69221 -4.01446 2.38147 2.96762 3.11904 3.16487 3.24350 3.67044 4.01225 4.13781 4.32471 4.49398 4.67673 4.75019 4.84365 5.16328 5.29799 5.50524 5.56288 5.62906 5.68652 5.82450 5.96327 6.03737 6.10947 6.43735 6.69457 7.29020 7.67651 7.76910 8.24280 8.52761 8.93349 9.29312 9.82310 10.45789 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.052882 B = 0.005793 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.352539 B = 4832.647027 C = 5134.249493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.113 0.887 9 N -0.499 5.499 10 C 0.397 3.603 11 O -0.591 6.591 12 C 0.532 3.468 13 O -0.546 6.546 14 N -0.607 5.607 15 C 0.097 3.903 16 C 0.057 3.943 17 H 0.148 0.852 18 C -0.169 4.169 19 C 0.098 3.902 20 H 0.135 0.865 21 C 0.038 3.962 22 O -0.378 6.378 23 H 0.280 0.720 24 H 0.404 0.596 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -12.829 -1.129 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.435 4.435 8 H 0.131 0.869 9 N -0.134 5.134 10 C 0.181 3.819 11 O -0.479 6.479 12 C 0.319 3.681 13 O -0.423 6.423 14 N -0.344 5.344 15 C -0.026 4.026 16 C 0.000 4.000 17 H 0.166 0.834 18 C -0.208 4.208 19 C -0.006 4.006 20 H 0.152 0.848 21 C -0.039 4.039 22 O -0.297 6.297 23 H 0.091 0.909 24 H 0.240 0.760 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.411 -12.637 -0.951 13.124 hybrid contribution -0.441 0.929 -0.114 1.035 sum 2.970 -11.708 -1.065 12.126 Atomic orbital electron populations 1.69492 1.06546 1.29289 1.45369 1.25598 0.95633 1.00497 0.95903 0.85657 0.79855 0.79962 0.78080 1.18709 1.20273 1.20268 1.19929 0.93985 0.81796 1.47825 0.86903 1.41555 1.10460 1.04144 1.57220 1.18822 0.87834 0.83975 0.91253 1.90568 1.12752 1.86329 1.58245 1.20556 0.87018 0.84560 0.75931 1.90691 1.13869 1.87343 1.50399 1.49071 1.07830 1.04114 1.73369 1.23136 0.80345 0.94532 1.04553 1.25184 0.98795 0.93110 0.82906 0.83416 1.24541 0.95514 1.01053 0.99655 1.24336 0.99756 0.81627 0.94837 0.84766 1.23953 0.82240 1.00263 0.97490 1.89042 1.22783 1.83788 1.34129 0.90944 0.76047 0.89527 0.89560 0.88899 0.88822 0.90339 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.32 13.03 55.53 0.72 -22.60 16 2 C 0.03 0.79 5.51 -17.40 -0.10 0.70 16 3 Si 0.94 20.04 29.56 -169.99 -5.02 15.02 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 7 C -0.30 -8.40 9.67 -15.15 -0.15 -8.54 16 8 H 0.11 3.17 7.15 -52.49 -0.38 2.80 16 9 N -0.50 -13.44 5.25 -11.59 -0.06 -13.51 16 10 C 0.40 10.10 7.79 -11.88 -0.09 10.01 16 11 O -0.59 -15.64 13.95 5.37 0.07 -15.57 16 12 C 0.53 11.93 7.95 -11.87 -0.09 11.83 16 13 O -0.55 -13.04 16.85 5.42 0.09 -12.95 16 14 N -0.61 -10.97 2.97 -156.92 -0.47 -11.43 16 15 C 0.10 1.56 4.94 -1.40 -0.01 1.55 16 16 C 0.06 0.68 5.96 -22.91 -0.14 0.54 16 17 H 0.15 1.28 8.14 -51.93 -0.42 0.86 16 18 C -0.17 -1.82 6.86 -22.26 -0.15 -1.98 16 19 C 0.10 1.35 5.33 -62.38 -0.33 1.01 16 20 H 0.13 1.76 8.09 -51.93 -0.42 1.34 16 21 C 0.04 0.50 7.12 38.85 0.28 0.77 16 22 O -0.38 -5.25 11.24 -35.23 -0.40 -5.64 16 23 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 24 H 0.40 10.99 7.35 -40.82 -0.30 10.69 16 25 H 0.09 1.55 7.89 -51.93 -0.41 1.15 16 26 H 0.09 1.43 7.64 -51.93 -0.40 1.03 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 262.41 15.07 3.95 3.95 Total: -1.00 -31.29 262.41 -5.03 -36.32 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -3.15 Total: 10.50 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: -0.78 Total: 15.90 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.20 Total: -47.54 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -0.23 Total: -34.16 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.29 -5.03 -36.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718265844.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.895 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds