Wall clock time and date at job start Mon Mar 30 2020 04:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31015 * 1 3 3 Si 1.86802 * 120.00300 * 2 1 4 4 H 1.48494 * 109.47290 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46480 * 299.99628 * 3 2 1 6 6 H 1.48495 * 109.47182 * 59.99670 * 3 2 1 7 7 C 1.39591 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99619 * 179.97438 * 7 2 1 9 9 N 1.36118 * 120.00393 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00113 * 180.02562 * 9 7 2 11 11 O 1.21495 * 120.00130 * 0.02562 * 10 9 7 12 12 C 1.48834 * 119.99606 * 179.97438 * 10 9 7 13 13 O 1.21434 * 120.00292 * 0.02562 * 12 10 9 14 14 N 1.34779 * 119.99857 * 179.97438 * 12 10 9 15 15 C 1.48363 * 127.15706 * 0.02915 * 14 12 10 16 16 C 1.56011 * 104.97876 * 182.55553 * 15 14 12 17 17 H 1.09000 * 116.79470 * 159.05517 * 16 15 14 18 18 C 1.57079 * 99.67102 * 32.79750 * 16 15 14 19 19 C 1.49379 * 127.10528 * 180.02562 * 14 12 10 20 20 H 1.08991 * 117.06002 * 14.95642 * 19 14 12 21 21 C 1.56164 * 103.69259 * 244.98859 * 19 14 12 22 22 O 1.44117 * 105.45431 * 288.36221 * 21 19 14 23 23 H 0.96997 * 119.99984 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99205 * 0.02562 * 9 7 2 25 25 H 1.09000 * 110.37174 * 63.67071 * 15 14 12 26 26 H 1.09005 * 110.34242 * 301.41888 * 15 14 12 27 27 H 1.09002 * 112.46134 * 63.73560 * 18 16 15 28 28 H 1.08998 * 112.46080 * 191.33562 * 18 16 15 29 29 H 1.09006 * 110.15699 * 169.40336 * 21 19 14 30 30 H 1.09000 * 110.38321 * 47.44189 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.7042 1.3463 0.0006 5 1 1.8855 2.3963 -1.2126 6 1 1.8855 2.3964 1.2124 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0001 9 7 1.3275 -2.3878 0.0005 10 6 2.0014 -3.5549 0.0016 11 8 3.2163 -3.5549 0.0030 12 6 1.2571 -4.8438 0.0022 13 8 0.0428 -4.8438 0.0012 14 7 1.9310 -6.0110 0.0027 15 6 3.4030 -6.1959 0.0034 16 6 3.6155 -7.7401 -0.0634 17 1 4.5847 -8.0877 -0.4211 18 6 2.3670 -8.1411 -0.9282 19 6 1.3498 -7.3871 0.0028 20 1 0.2931 -7.4791 -0.2481 21 6 1.7964 -7.9770 1.3780 22 8 3.2127 -8.2123 1.2533 23 1 -0.4850 0.8400 -0.0004 24 1 0.3575 -2.3876 -0.0002 25 1 3.8356 -5.7934 0.9193 26 1 3.8458 -5.7147 -0.8687 27 1 2.4033 -7.7193 -1.9327 28 1 2.1990 -9.2179 -0.9427 29 1 1.2738 -8.9136 1.5726 30 1 1.6014 -7.2633 2.1785 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718265844.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:11 Heat of formation + Delta-G solvation = -104.632910 kcal Electronic energy + Delta-G solvation = -17356.654802 eV Core-core repulsion = 14345.230131 eV Total energy + Delta-G solvation = -3011.424671 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -42.26333 -40.62395 -38.88618 -36.49877 -35.51299 -33.50095 -31.54326 -30.98343 -27.96497 -26.75425 -24.99134 -22.38540 -22.12846 -20.62628 -19.96807 -18.63257 -18.23348 -17.46509 -16.99757 -16.82075 -16.25765 -16.00502 -15.68269 -15.03213 -14.75399 -14.16260 -13.79812 -13.72828 -13.62602 -12.99771 -12.90552 -12.83496 -12.60648 -12.53908 -12.39959 -12.15454 -12.09607 -11.69656 -10.76928 -10.30851 -10.12568 -9.79693 -8.68692 -6.13639 0.52675 1.36862 1.43681 1.48233 1.60358 2.24069 2.29426 2.69559 2.95769 3.11192 3.31386 3.39325 3.63825 3.80548 3.93856 4.26259 4.42301 4.49987 4.62573 4.82272 4.83825 4.88356 4.95614 5.10555 5.22577 5.65379 5.66137 6.10402 6.26506 6.67106 6.91340 7.24052 7.76242 8.47619 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.052882 B = 0.005793 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.352539 B = 4832.647027 C = 5134.249493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.005 4.005 3 Si 1.012 2.988 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.344 4.344 8 H 0.099 0.901 9 N -0.512 5.512 10 C 0.390 3.610 11 O -0.607 6.607 12 C 0.531 3.469 13 O -0.568 6.568 14 N -0.602 5.602 15 C 0.086 3.914 16 C 0.073 3.927 17 H 0.189 0.811 18 C -0.149 4.149 19 C 0.083 3.917 20 H 0.142 0.858 21 C 0.040 3.960 22 O -0.390 6.390 23 H 0.289 0.711 24 H 0.399 0.601 25 H 0.060 0.940 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -14.332 -1.663 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.210 4.210 3 Si 0.833 3.167 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.474 4.474 8 H 0.117 0.883 9 N -0.146 5.146 10 C 0.175 3.825 11 O -0.496 6.496 12 C 0.317 3.683 13 O -0.448 6.448 14 N -0.337 5.337 15 C -0.036 4.036 16 C 0.017 3.983 17 H 0.206 0.794 18 C -0.187 4.187 19 C -0.018 4.018 20 H 0.160 0.840 21 C -0.037 4.037 22 O -0.309 6.309 23 H 0.099 0.901 24 H 0.234 0.766 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.134 0.866 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.059 -14.194 -1.483 14.837 hybrid contribution -0.612 1.282 0.073 1.423 sum 3.447 -12.912 -1.411 13.438 Atomic orbital electron populations 1.69558 1.07884 1.30803 1.45234 1.26571 0.96516 1.03521 0.94344 0.84614 0.78214 0.75130 0.78774 1.18771 1.18930 1.19076 1.20013 0.93647 0.82979 1.50736 0.88337 1.41651 1.10154 1.04736 1.58062 1.19508 0.87977 0.85022 0.89988 1.90533 1.13536 1.87033 1.58489 1.19910 0.86614 0.84924 0.76854 1.90667 1.14325 1.87754 1.52056 1.49184 1.09145 1.04679 1.70646 1.23321 0.78897 0.98500 1.02909 1.25444 1.01277 0.89024 0.82583 0.79399 1.24561 0.92697 1.02727 0.98724 1.24819 1.01141 0.78958 0.96914 0.84022 1.23978 0.82382 1.01336 0.95997 1.89046 1.23114 1.83446 1.35331 0.90061 0.76610 0.92133 0.90316 0.88421 0.85051 0.86597 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.77 13.03 21.77 0.28 -48.49 16 2 C -0.01 -0.29 5.51 85.14 0.47 0.18 16 3 Si 1.01 41.09 29.56 68.60 2.03 43.11 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.34 -19.64 9.67 84.36 0.82 -18.82 16 8 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 9 N -0.51 -28.80 5.25 -308.88 -1.62 -30.42 16 10 C 0.39 20.68 7.79 87.08 0.68 21.36 16 11 O -0.61 -33.40 13.95 -3.70 -0.05 -33.45 16 12 C 0.53 24.46 7.95 87.08 0.69 25.15 16 13 O -0.57 -27.82 16.85 -3.51 -0.06 -27.88 16 14 N -0.60 -21.65 2.97 -768.69 -2.28 -23.93 16 15 C 0.09 2.73 4.94 87.06 0.43 3.16 16 16 C 0.07 1.51 5.96 33.07 0.20 1.70 16 17 H 0.19 2.38 8.14 -2.39 -0.02 2.36 16 18 C -0.15 -2.60 6.86 33.49 0.23 -2.37 16 19 C 0.08 2.11 5.33 46.99 0.25 2.36 16 20 H 0.14 3.41 8.09 -2.39 -0.02 3.39 16 21 C 0.04 0.96 7.12 73.08 0.52 1.48 16 22 O -0.39 -9.70 11.24 -148.98 -1.67 -11.37 16 23 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 24 H 0.40 22.76 7.35 -92.71 -0.68 22.08 16 25 H 0.06 2.23 7.89 -2.39 -0.02 2.21 16 26 H 0.08 2.61 7.64 -2.38 -0.02 2.59 16 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -70.20 262.41 1.41 -68.80 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.50 Total: 29.43 kcal Atomic # 6 Polarization: 29.92 SS G_CDS: 4.28 Total: 34.20 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -3.62 Total: -102.84 kcal Atomic # 8 Polarization: -70.92 SS G_CDS: -1.79 Total: -72.70 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -70.20 1.41 -68.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718265844.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.838 kcal (2) G-P(sol) polarization free energy of solvation -70.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds