Wall clock time and date at job start Mon Mar 30 2020 04:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.47287 * 2 1 4 4 C 1.31323 * 120.76691 * 94.97477 * 3 2 1 5 5 C 1.50697 * 125.93215 * 0.19887 * 4 3 2 6 6 S 1.77560 * 108.13686 * 180.21656 * 4 3 2 7 7 C 1.83548 * 96.35467 * 14.78876 * 6 4 3 8 8 C 1.50697 * 111.22662 * 218.99593 * 7 6 4 9 9 O 1.21290 * 120.00421 * 81.00815 * 8 7 6 10 10 N 1.34776 * 119.99825 * 261.00710 * 8 7 6 11 11 C 1.37098 * 120.00574 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99620 * 359.97438 * 11 10 8 13 13 C 1.38947 * 120.00457 * 180.02562 * 11 10 8 14 14 N 1.31405 * 119.99939 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99908 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47380 * 89.99702 * 15 13 11 17 17 H 1.48500 * 109.46771 * 209.99813 * 15 13 11 18 18 H 1.48503 * 109.47463 * 329.99549 * 15 13 11 19 19 C 1.49613 * 120.76797 * 274.99960 * 3 2 1 20 20 H 1.09001 * 109.47117 * 300.00187 * 1 2 3 21 21 H 1.09001 * 109.47046 * 60.00025 * 1 2 3 22 22 H 1.08999 * 109.47213 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47209 * 239.99454 * 2 1 3 24 24 H 1.09001 * 109.47046 * 119.99975 * 2 1 3 25 25 H 1.09001 * 109.47330 * 179.97438 * 5 4 3 26 26 H 1.09003 * 109.47308 * 300.00336 * 5 4 3 27 27 H 1.09005 * 109.46984 * 60.00248 * 5 4 3 28 28 H 1.09001 * 111.23248 * 94.56245 * 7 6 4 29 29 H 0.97004 * 120.00220 * 0.02562 * 10 8 7 30 30 H 0.97001 * 119.99976 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.46626 * 40.98917 * 19 3 2 32 32 H 1.09007 * 109.46310 * 281.05561 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3485 2.0215 1.1241 5 6 2.2669 1.4181 2.5026 6 16 2.8884 3.6683 0.7379 7 6 2.2411 3.6968 -0.9794 8 6 3.1944 4.4010 -1.9102 9 8 4.1565 3.8103 -2.3537 10 7 2.9780 5.6872 -2.2498 11 6 3.8448 6.3278 -3.0970 12 1 4.7015 5.8019 -3.4919 13 6 3.6220 7.6539 -3.4467 14 7 2.5799 8.2940 -2.9658 15 14 4.8036 8.5269 -4.6004 16 1 4.3540 8.3406 -6.0034 17 1 4.8307 9.9761 -4.2775 18 1 6.1656 7.9580 -4.4375 19 6 2.1818 2.1797 -1.2807 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.5936 2.1512 3.2401 26 1 1.2376 1.1261 2.7112 27 1 2.9110 0.5402 2.5536 28 1 1.2489 4.1463 -1.0199 29 1 2.2088 6.1597 -1.8948 30 1 2.4241 9.2197 -3.2102 31 1 1.3302 1.9709 -1.9282 32 1 3.1008 1.8722 -1.7799 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725540052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:52 Heat of formation + Delta-G solvation = -40.225990 kcal Electronic energy + Delta-G solvation = -14946.148076 eV Core-core repulsion = 12418.383602 eV Total energy + Delta-G solvation = -2527.764474 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -38.57919 -37.30513 -34.09725 -32.20997 -31.45400 -31.21138 -27.25425 -25.01714 -23.57987 -22.99962 -19.42298 -18.15984 -17.75155 -16.57327 -16.07319 -15.06962 -14.72009 -14.21142 -13.99573 -13.73511 -13.42612 -13.00816 -12.85405 -12.76461 -12.28253 -12.00386 -11.74451 -11.52593 -11.44606 -11.16404 -10.84572 -10.79172 -10.44052 -10.29484 -9.77553 -9.63461 -9.38653 -8.53477 -8.07529 -7.01230 -6.51581 -3.90549 1.78938 2.06033 2.64068 3.16173 3.22997 3.29325 4.01307 4.10008 4.61258 4.83568 4.96578 5.12131 5.17414 5.26256 5.34203 5.41283 5.46832 5.57708 5.66116 5.83301 5.85456 5.91993 5.94295 6.12740 6.18689 6.30150 6.43006 6.79561 7.46386 7.94265 8.48864 9.06663 9.41056 9.92655 10.65230 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.046341 B = 0.005434 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.067493 B = 5151.159287 C = 5329.598113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.143 4.143 4 C -0.117 4.117 5 C -0.078 4.078 6 S -0.159 6.159 7 C -0.061 4.061 8 C 0.452 3.548 9 O -0.582 6.582 10 N -0.544 5.544 11 C -0.299 4.299 12 H 0.107 0.893 13 C 0.026 3.974 14 N -0.893 5.893 15 Si 0.934 3.066 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.078 4.078 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.394 0.606 30 H 0.275 0.725 31 H 0.082 0.918 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.536 -11.693 7.175 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.154 4.154 4 C -0.230 4.230 5 C -0.137 4.137 6 S 0.083 5.917 7 C -0.193 4.193 8 C 0.236 3.764 9 O -0.467 6.467 10 N -0.179 5.179 11 C -0.430 4.430 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.533 5.533 15 Si 0.760 3.240 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.117 4.117 20 H 0.073 0.927 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.312 -10.897 7.552 13.941 hybrid contribution -0.655 0.006 -1.026 1.217 sum -4.968 -10.891 6.526 13.634 Atomic orbital electron populations 1.21710 0.95016 1.01328 1.02220 1.20347 0.95786 0.92307 1.02560 1.21675 1.02924 0.97450 0.93382 1.23619 1.04315 0.97263 0.97759 1.20297 1.02162 1.00160 0.91045 1.86440 1.73985 1.16120 1.15117 1.24091 1.01977 0.99339 0.93858 1.18854 0.88038 0.83453 0.86045 1.90517 1.31598 1.65983 1.58626 1.41877 1.25619 1.09115 1.41285 1.19791 1.06669 0.94292 1.22202 0.87564 1.25339 0.97434 0.96627 0.98354 1.69617 1.27544 1.12184 1.43949 0.85797 0.80325 0.78147 0.79708 1.20216 1.20751 1.19213 1.20899 1.04800 0.89906 0.96056 0.92694 0.92506 0.92624 0.91146 0.91234 0.91411 0.90923 0.90990 0.87677 0.77199 0.91553 0.89967 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.07 -0.77 5.93 -27.89 -0.17 -0.94 16 3 C -0.14 -2.09 5.21 -101.67 -0.53 -2.62 16 4 C -0.12 -1.76 6.55 -36.11 -0.24 -2.00 16 5 C -0.08 -0.88 9.28 36.00 0.33 -0.54 16 6 S -0.16 -2.99 22.59 -107.50 -2.43 -5.41 16 7 C -0.06 -1.18 3.89 -26.94 -0.10 -1.29 16 8 C 0.45 11.06 7.03 -10.99 -0.08 10.98 16 9 O -0.58 -16.11 15.36 5.55 0.09 -16.02 16 10 N -0.54 -14.10 5.29 -10.97 -0.06 -14.16 16 11 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 12 H 0.11 3.09 7.16 -52.49 -0.38 2.72 16 13 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 14 N -0.89 -24.16 13.05 55.50 0.72 -23.43 16 15 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C -0.08 -1.33 5.77 -27.46 -0.16 -1.49 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.68 6.96 -51.93 -0.36 0.32 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 28 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 29 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.11 2.07 6.92 -51.92 -0.36 1.71 16 LS Contribution 286.09 15.07 4.31 4.31 Total: -1.00 -30.56 286.09 -7.54 -38.10 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.34 Total: 7.64 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.81 Total: -6.84 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.67 Total: -37.60 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -2.43 Total: -5.41 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.56 -7.54 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725540052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.122 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds