Wall clock time and date at job start Mon Mar 30 2020 04:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.30687 * 121.38033 * 2 1 4 4 S 1.76452 * 109.77287 * 179.97438 * 3 2 1 5 5 C 1.76984 * 96.89564 * 0.05749 * 4 3 2 6 6 H 1.08004 * 127.54196 * 180.02562 * 5 4 3 7 7 C 1.49005 * 121.51135 * 180.02562 * 2 1 3 8 8 H 1.09004 * 109.10101 * 59.60452 * 7 2 1 9 9 C 1.50698 * 109.10257 * 300.52317 * 7 2 1 10 10 O 1.21279 * 119.99949 * 358.38981 * 9 7 2 11 11 N 1.34779 * 120.00015 * 178.39965 * 9 7 2 12 12 C 1.46497 * 120.00248 * 179.97438 * 11 9 7 13 13 H 1.09005 * 109.47164 * 325.00272 * 12 11 9 14 14 C 1.53001 * 109.47198 * 84.99628 * 12 11 9 15 15 C 1.50698 * 109.47496 * 204.99630 * 12 11 9 16 16 H 1.08005 * 119.99706 * 354.36611 * 15 12 11 17 17 C 1.37877 * 119.99915 * 174.36080 * 15 12 11 18 18 N 1.31521 * 119.99340 * 156.86838 * 17 15 12 19 19 Si 1.86798 * 120.00380 * 336.86843 * 17 15 12 20 20 H 1.48500 * 109.47063 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.46639 * 299.99865 * 19 17 15 22 22 H 1.48500 * 109.47107 * 59.99594 * 19 17 15 23 23 H 1.08998 * 109.46863 * 269.95160 * 1 2 3 24 24 H 1.09002 * 109.46710 * 29.95401 * 1 2 3 25 25 H 1.08999 * 109.47084 * 149.94879 * 1 2 3 26 26 H 1.07998 * 125.13568 * 359.97438 * 3 2 1 27 27 H 0.97001 * 119.99445 * 359.97438 * 11 9 7 28 28 H 1.08994 * 109.47265 * 173.09878 * 14 12 11 29 29 H 1.09002 * 109.47128 * 293.10629 * 14 12 11 30 30 H 1.09001 * 109.47164 * 53.09906 * 14 12 11 31 31 H 0.96994 * 120.00358 * 354.92933 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.1157 0.0000 4 16 3.9159 0.7607 0.0007 5 6 3.7705 -1.0032 -0.0007 6 1 4.5699 -1.7294 -0.0004 7 6 2.2858 -1.2703 -0.0006 8 1 2.0279 -1.8464 -0.8893 9 6 1.9270 -2.0693 1.2257 10 8 1.1370 -1.6231 2.0305 11 7 2.4841 -3.2797 1.4283 12 6 2.1358 -4.0563 2.6207 13 1 1.9752 -3.3802 3.4605 14 6 0.8564 -4.8523 2.3551 15 6 3.2594 -5.0058 2.9478 16 1 4.1034 -5.0942 2.2798 17 6 3.2098 -5.7615 4.0999 18 7 3.8992 -6.8785 4.1837 19 14 2.1638 -5.1991 5.5417 20 1 2.2818 -6.1793 6.6510 21 1 2.6340 -3.8689 6.0051 22 1 0.7447 -5.1015 5.1154 23 1 -0.3633 -0.0009 1.0277 24 1 -0.3633 0.8904 -0.5131 25 1 -0.3633 -0.8895 -0.5146 26 1 1.7571 2.1062 -0.0004 27 1 3.1158 -3.6366 0.7844 28 1 0.6644 -5.5217 3.1935 29 1 0.0183 -4.1650 2.2395 30 1 0.9751 -5.4371 1.4430 31 1 4.3834 -7.2087 3.4109 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725567355.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:08 Heat of formation + Delta-G solvation = -13.107342 kcal Electronic energy + Delta-G solvation = -15106.678858 eV Core-core repulsion = 12593.746077 eV Total energy + Delta-G solvation = -2512.932781 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -37.04124 -34.07275 -32.83407 -30.95758 -28.56432 -26.66877 -25.11511 -23.58662 -20.33793 -19.17520 -17.58773 -16.68654 -15.75528 -14.24521 -13.93218 -13.33047 -12.47676 -12.19197 -11.65744 -11.59141 -11.22229 -10.96677 -10.72566 -10.59447 -10.15920 -9.88824 -9.41739 -9.37666 -8.96117 -8.91797 -8.74987 -8.55684 -8.15928 -7.94406 -7.27234 -7.14383 -6.69452 -6.20862 -5.47148 -5.34895 -3.00254 -2.33211 4.34039 4.40312 4.43723 4.60323 4.93505 5.48531 5.72082 6.22325 6.36175 6.48044 7.17428 7.34088 7.49946 7.61149 7.68185 7.84130 7.92947 7.96557 8.11280 8.35477 8.47666 8.68749 8.75709 9.08975 9.13703 9.33004 9.43489 9.56617 10.00424 10.13288 10.55206 10.62722 11.26825 11.88914 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.035251 B = 0.006606 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.112511 B = 4237.389519 C = 4549.945409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.135 4.135 3 C -0.176 4.176 4 S -0.148 6.148 5 C -0.771 4.771 6 H 0.102 0.898 7 C 0.084 3.916 8 H 0.003 0.997 9 C 0.507 3.493 10 O -0.600 6.600 11 N -0.711 5.711 12 C 0.238 3.762 13 H 0.031 0.969 14 C -0.149 4.149 15 C -0.595 4.595 16 H 0.061 0.939 17 C 0.035 3.965 18 N -0.914 5.914 19 Si 1.038 2.962 20 H -0.291 1.291 21 H -0.282 1.282 22 H -0.275 1.275 23 H 0.063 0.937 24 H 0.036 0.964 25 H 0.043 0.957 26 H 0.120 0.880 27 H 0.388 0.612 28 H 0.048 0.952 29 H 0.026 0.974 30 H 0.038 0.962 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 4.574 -2.358 9.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.153 4.153 3 C -0.309 4.309 4 S 0.100 5.900 5 C -0.900 4.900 6 H 0.120 0.880 7 C 0.062 3.938 8 H 0.020 0.980 9 C 0.297 3.703 10 O -0.484 6.484 11 N -0.358 5.358 12 C 0.133 3.867 13 H 0.049 0.951 14 C -0.208 4.208 15 C -0.633 4.633 16 H 0.079 0.921 17 C -0.168 4.168 18 N -0.549 5.549 19 Si 0.866 3.134 20 H -0.217 1.217 21 H -0.208 1.208 22 H -0.202 1.202 23 H 0.082 0.918 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.138 0.862 27 H 0.220 0.780 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.238 5.274 -0.219 8.958 hybrid contribution -0.325 -0.784 -1.698 1.898 sum -7.563 4.490 -1.917 9.002 Atomic orbital electron populations 1.20382 0.93345 0.98941 1.01094 1.20916 0.94643 0.94742 1.05000 1.24106 0.98049 0.98487 1.10268 1.81803 1.04567 1.15050 1.88559 1.24161 0.91002 0.85995 1.88849 0.87979 1.17592 0.95006 0.90397 0.90830 0.97952 1.22689 0.77358 0.80057 0.90194 1.90364 1.37717 1.70684 1.49605 1.46033 1.46154 1.18469 1.25104 1.18729 0.92780 0.89711 0.85487 0.95106 1.22370 0.98915 0.99267 1.00221 1.22266 1.06562 1.24273 1.10233 0.92095 1.25594 0.98116 0.93005 1.00094 1.70839 1.31948 1.18003 1.34136 0.84156 0.77081 0.75945 0.76200 1.21692 1.20811 1.20156 0.91791 0.94511 0.93801 0.86232 0.78007 0.93337 0.95454 0.94325 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.66 9.28 36.00 0.33 -2.33 16 2 C -0.14 -5.30 4.93 -101.79 -0.50 -5.80 16 3 C -0.18 -6.70 10.79 29.10 0.31 -6.39 16 4 S -0.15 -5.99 22.98 -107.50 -2.47 -8.46 16 5 C -0.77 -34.21 11.28 36.08 0.41 -33.80 16 6 H 0.10 4.69 8.06 -52.48 -0.42 4.27 16 7 C 0.08 3.57 2.89 -94.81 -0.27 3.29 16 8 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 9 C 0.51 21.99 6.98 -10.99 -0.08 21.91 16 10 O -0.60 -26.80 14.37 5.56 0.08 -26.72 16 11 N -0.71 -30.07 4.96 -54.93 -0.27 -30.35 16 12 C 0.24 10.00 2.16 -69.08 -0.15 9.85 16 13 H 0.03 1.38 6.15 -51.93 -0.32 1.06 16 14 C -0.15 -5.74 9.21 37.16 0.34 -5.39 16 15 C -0.60 -25.64 8.95 -34.44 -0.31 -25.95 16 16 H 0.06 2.74 7.96 -52.48 -0.42 2.32 16 17 C 0.04 1.47 5.19 -17.82 -0.09 1.38 16 18 N -0.91 -38.25 13.70 55.43 0.76 -37.49 16 19 Si 1.04 38.17 26.44 -169.99 -4.50 33.68 16 20 H -0.29 -10.14 7.11 56.52 0.40 -9.74 16 21 H -0.28 -10.41 7.11 56.52 0.40 -10.00 16 22 H -0.28 -9.79 6.15 56.52 0.35 -9.45 16 23 H 0.06 2.24 7.40 -51.93 -0.38 1.85 16 24 H 0.04 1.08 8.09 -51.93 -0.42 0.66 16 25 H 0.04 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.12 4.02 8.06 -52.49 -0.42 3.60 16 27 H 0.39 16.10 8.40 -40.82 -0.34 15.76 16 28 H 0.05 1.80 5.48 -51.93 -0.28 1.51 16 29 H 0.03 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.04 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.26 11.00 8.73 -40.82 -0.36 10.64 16 LS Contribution 275.36 15.07 4.15 4.15 Total: -2.00 -87.45 275.36 -6.17 -93.61 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -3.91 Total: 14.80 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 0.00 Total: -43.23 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: 0.49 Total: -67.84 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: 0.08 Total: -26.72 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: -4.50 Total: 33.68 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -2.47 Total: -8.46 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -87.45 -6.17 -93.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567355.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.507 kcal (2) G-P(sol) polarization free energy of solvation -87.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds