Wall clock time and date at job start Mon Mar 30 2020 04:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.30687 * 121.38033 * 2 1 4 4 S 1.76452 * 109.77287 * 179.97438 * 3 2 1 5 5 C 1.76984 * 96.89564 * 0.05749 * 4 3 2 6 6 H 1.08004 * 127.54196 * 180.02562 * 5 4 3 7 7 C 1.49005 * 121.51135 * 180.02562 * 2 1 3 8 8 H 1.09004 * 109.10101 * 59.60452 * 7 2 1 9 9 C 1.50698 * 109.10257 * 300.52317 * 7 2 1 10 10 O 1.21279 * 119.99949 * 358.38981 * 9 7 2 11 11 N 1.34779 * 120.00015 * 178.39965 * 9 7 2 12 12 C 1.46497 * 120.00248 * 179.97438 * 11 9 7 13 13 H 1.09005 * 109.47164 * 325.00272 * 12 11 9 14 14 C 1.53001 * 109.47198 * 84.99628 * 12 11 9 15 15 C 1.50698 * 109.47496 * 204.99630 * 12 11 9 16 16 H 1.08005 * 119.99706 * 354.36611 * 15 12 11 17 17 C 1.37877 * 119.99915 * 174.36080 * 15 12 11 18 18 N 1.31521 * 119.99340 * 156.86838 * 17 15 12 19 19 Si 1.86798 * 120.00380 * 336.86843 * 17 15 12 20 20 H 1.48500 * 109.47063 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.46639 * 299.99865 * 19 17 15 22 22 H 1.48500 * 109.47107 * 59.99594 * 19 17 15 23 23 H 1.08998 * 109.46863 * 269.95160 * 1 2 3 24 24 H 1.09002 * 109.46710 * 29.95401 * 1 2 3 25 25 H 1.08999 * 109.47084 * 149.94879 * 1 2 3 26 26 H 1.07998 * 125.13568 * 359.97438 * 3 2 1 27 27 H 0.97001 * 119.99445 * 359.97438 * 11 9 7 28 28 H 1.08994 * 109.47265 * 173.09878 * 14 12 11 29 29 H 1.09002 * 109.47128 * 293.10629 * 14 12 11 30 30 H 1.09001 * 109.47164 * 53.09906 * 14 12 11 31 31 H 0.96994 * 120.00358 * 354.92933 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.1157 0.0000 4 16 3.9159 0.7607 0.0007 5 6 3.7705 -1.0032 -0.0007 6 1 4.5699 -1.7294 -0.0004 7 6 2.2858 -1.2703 -0.0006 8 1 2.0279 -1.8464 -0.8893 9 6 1.9270 -2.0693 1.2257 10 8 1.1370 -1.6231 2.0305 11 7 2.4841 -3.2797 1.4283 12 6 2.1358 -4.0563 2.6207 13 1 1.9752 -3.3802 3.4605 14 6 0.8564 -4.8523 2.3551 15 6 3.2594 -5.0058 2.9478 16 1 4.1034 -5.0942 2.2798 17 6 3.2098 -5.7615 4.0999 18 7 3.8992 -6.8785 4.1837 19 14 2.1638 -5.1991 5.5417 20 1 2.2818 -6.1793 6.6510 21 1 2.6340 -3.8689 6.0051 22 1 0.7447 -5.1015 5.1154 23 1 -0.3633 -0.0009 1.0277 24 1 -0.3633 0.8904 -0.5131 25 1 -0.3633 -0.8895 -0.5146 26 1 1.7571 2.1062 -0.0004 27 1 3.1158 -3.6366 0.7844 28 1 0.6644 -5.5217 3.1935 29 1 0.0183 -4.1650 2.2395 30 1 0.9751 -5.4371 1.4430 31 1 4.3834 -7.2087 3.4109 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725567355.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:06 Heat of formation + Delta-G solvation = -86.567339 kcal Electronic energy + Delta-G solvation = -15109.864323 eV Core-core repulsion = 12593.746077 eV Total energy + Delta-G solvation = -2516.118246 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.42774 -37.25732 -36.13121 -34.31262 -31.81814 -29.79430 -28.05659 -26.86093 -23.70843 -22.44428 -20.94449 -19.92848 -18.95941 -17.44014 -17.31236 -16.55235 -15.54045 -15.44648 -14.74649 -14.68594 -14.49673 -14.15263 -13.69614 -13.48854 -13.28040 -13.07665 -12.63784 -12.43605 -12.08769 -11.99461 -11.78783 -11.63522 -11.31929 -11.21177 -10.52092 -10.45687 -10.05132 -9.61001 -8.84269 -8.55587 -6.40862 -5.76315 1.40572 1.40748 1.50266 1.75335 1.86425 2.26956 2.43651 2.92791 3.02558 3.16782 4.33574 4.41643 4.51066 4.71968 4.77412 4.81763 4.83591 4.90321 5.08290 5.13022 5.27301 5.48181 5.60123 5.78559 5.87154 5.96368 6.06812 6.24969 6.54716 6.62434 7.14335 7.28849 7.82769 8.51489 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.035251 B = 0.006606 C = 0.006152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.112511 B = 4237.389519 C = 4549.945409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.152 4.152 3 C -0.164 4.164 4 S -0.153 6.153 5 C -0.818 4.818 6 H 0.066 0.934 7 C 0.077 3.923 8 H 0.001 0.999 9 C 0.504 3.496 10 O -0.613 6.613 11 N -0.712 5.712 12 C 0.241 3.759 13 H 0.008 0.992 14 C -0.137 4.137 15 C -0.626 4.626 16 H 0.023 0.977 17 C 0.002 3.998 18 N -0.912 5.912 19 Si 1.078 2.922 20 H -0.255 1.255 21 H -0.287 1.287 22 H -0.252 1.252 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.048 0.952 26 H 0.176 0.824 27 H 0.387 0.613 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 5.693 -1.483 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.168 4.168 3 C -0.296 4.296 4 S 0.093 5.907 5 C -0.948 4.948 6 H 0.084 0.916 7 C 0.054 3.946 8 H 0.018 0.982 9 C 0.294 3.706 10 O -0.497 6.497 11 N -0.358 5.358 12 C 0.136 3.864 13 H 0.026 0.974 14 C -0.196 4.196 15 C -0.664 4.664 16 H 0.041 0.959 17 C -0.199 4.199 18 N -0.546 5.546 19 Si 0.899 3.101 20 H -0.179 1.179 21 H -0.214 1.214 22 H -0.176 1.176 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.193 0.807 27 H 0.219 0.781 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.939 6.350 0.630 11.811 hybrid contribution 0.640 -1.182 -2.018 2.425 sum -9.299 5.168 -1.388 10.729 Atomic orbital electron populations 1.20389 0.89359 1.01860 1.01365 1.21271 0.97500 0.93312 1.04712 1.24629 0.95791 1.00775 1.08415 1.81564 1.07706 1.11657 1.89725 1.24166 0.91661 0.88420 1.90528 0.91592 1.17712 0.94357 0.92388 0.90122 0.98180 1.22829 0.77205 0.80137 0.90412 1.90336 1.38359 1.70934 1.50087 1.46125 1.45892 1.18579 1.25209 1.18748 0.93979 0.89112 0.84535 0.97424 1.22203 0.96960 0.99152 1.01274 1.22220 1.06693 1.26264 1.11208 0.95884 1.27049 0.98609 0.92082 1.02158 1.70931 1.31674 1.18309 1.33667 0.83642 0.76621 0.75939 0.73935 1.17869 1.21372 1.17611 0.92611 0.89316 0.93321 0.80721 0.78129 0.91863 0.94669 0.93480 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -4.43 9.28 71.24 0.66 -3.77 16 2 C -0.15 -11.31 4.93 -16.69 -0.08 -11.39 16 3 C -0.16 -11.69 10.79 68.10 0.73 -10.96 16 4 S -0.15 -12.11 22.98 -56.49 -1.30 -13.40 16 5 C -0.82 -72.97 11.28 71.29 0.80 -72.17 16 6 H 0.07 6.23 8.06 -2.91 -0.02 6.21 16 7 C 0.08 6.40 2.89 -13.51 -0.04 6.37 16 8 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 9 C 0.50 43.16 6.98 87.66 0.61 43.77 16 10 O -0.61 -53.34 14.37 -3.02 -0.04 -53.38 16 11 N -0.71 -60.25 4.96 -446.10 -2.21 -62.47 16 12 C 0.24 20.00 2.16 44.25 0.10 20.10 16 13 H 0.01 0.69 6.15 -2.38 -0.01 0.68 16 14 C -0.14 -10.20 9.21 71.98 0.66 -9.54 16 15 C -0.63 -54.00 8.95 25.60 0.23 -53.78 16 16 H 0.02 2.11 7.96 -2.91 -0.02 2.09 16 17 C 0.00 0.13 5.19 84.65 0.44 0.57 16 18 N -0.91 -74.93 13.70 21.45 0.29 -74.63 16 19 Si 1.08 74.62 26.44 68.60 1.81 76.44 16 20 H -0.25 -16.15 7.11 99.48 0.71 -15.44 16 21 H -0.29 -20.16 7.11 99.48 0.71 -19.46 16 22 H -0.25 -16.45 6.15 99.48 0.61 -15.84 16 23 H 0.06 3.61 7.40 -2.39 -0.02 3.60 16 24 H 0.09 4.65 8.09 -2.39 -0.02 4.63 16 25 H 0.05 2.96 8.14 -2.39 -0.02 2.95 16 26 H 0.18 10.48 8.06 -2.91 -0.02 10.46 16 27 H 0.39 32.67 8.40 -92.71 -0.78 31.90 16 28 H 0.06 4.46 5.48 -2.39 -0.01 4.45 16 29 H 0.03 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.05 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.26 21.22 8.73 -92.71 -0.81 20.41 16 Total: -2.00 -178.63 275.36 2.90 -175.74 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: 0.23 Total: 42.50 kcal Atomic # 6 Polarization: -94.90 SS G_CDS: 4.12 Total: -90.79 kcal Atomic # 7 Polarization: -135.18 SS G_CDS: -1.92 Total: -137.10 kcal Atomic # 8 Polarization: -53.34 SS G_CDS: -0.04 Total: -53.38 kcal Atomic # 14 Polarization: 74.62 SS G_CDS: 1.81 Total: 76.44 kcal Atomic # 16 Polarization: -12.11 SS G_CDS: -1.30 Total: -13.40 kcal Total: -178.63 2.90 -175.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567355.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.168 kcal (2) G-P(sol) polarization free energy of solvation -178.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -175.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds