Wall clock time and date at job start Mon Mar 30 2020 04:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30883 * 121.50897 * 2 1 4 4 S 1.76449 * 109.81716 * 179.97438 * 3 2 1 5 5 C 1.76981 * 96.89522 * 359.97438 * 4 3 2 6 6 H 1.08003 * 127.54605 * 180.02562 * 5 4 3 7 7 C 1.49000 * 121.51162 * 179.97438 * 2 1 3 8 8 H 1.09002 * 109.10247 * 300.43055 * 7 2 1 9 9 C 1.50708 * 109.10020 * 59.51018 * 7 2 1 10 10 O 1.21276 * 119.99877 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99851 * 180.02562 * 9 7 2 12 12 C 1.46493 * 120.00036 * 180.02562 * 11 9 7 13 13 H 1.09006 * 109.47194 * 325.00105 * 12 11 9 14 14 C 1.52997 * 109.47181 * 84.99862 * 12 11 9 15 15 C 1.50703 * 109.47210 * 204.99937 * 12 11 9 16 16 H 1.07989 * 119.99917 * 325.87345 * 15 12 11 17 17 C 1.37877 * 119.99665 * 145.87315 * 15 12 11 18 18 N 1.31518 * 119.99718 * 177.64134 * 17 15 12 19 19 Si 1.86798 * 120.00409 * 357.63523 * 17 15 12 20 20 H 1.48496 * 109.47597 * 274.92748 * 19 17 15 21 21 H 1.48509 * 109.46806 * 34.92742 * 19 17 15 22 22 H 1.48500 * 109.47336 * 154.92335 * 19 17 15 23 23 H 1.09008 * 109.47042 * 270.02584 * 1 2 3 24 24 H 1.08995 * 109.47526 * 30.02371 * 1 2 3 25 25 H 1.09001 * 109.47486 * 150.02700 * 1 2 3 26 26 H 1.07999 * 125.09065 * 359.97310 * 3 2 1 27 27 H 0.96997 * 120.00102 * 0.02562 * 11 9 7 28 28 H 1.09000 * 109.47220 * 56.13495 * 14 12 11 29 29 H 1.09000 * 109.47341 * 176.13400 * 14 12 11 30 30 H 1.08996 * 109.47554 * 296.13783 * 14 12 11 31 31 H 0.97004 * 119.99814 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1159 0.0000 4 16 3.9189 0.7583 0.0007 5 6 3.7709 -1.0053 0.0019 6 1 4.5692 -1.7328 0.0030 7 6 2.2857 -1.2703 0.0006 8 1 2.0274 -1.8467 0.8889 9 6 1.9275 -2.0689 -1.2263 10 8 1.1163 -1.6352 -2.0166 11 7 2.5086 -3.2651 -1.4450 12 6 2.1608 -4.0412 -2.6378 13 1 1.1066 -3.8936 -2.8728 14 6 3.0163 -3.5745 -3.8173 15 6 2.4177 -5.5033 -2.3784 16 1 3.2418 -5.8032 -1.7482 17 6 1.6006 -6.4581 -2.9457 18 7 1.8524 -7.7351 -2.7573 19 14 0.1360 -5.9379 -3.9818 20 1 -1.0276 -5.6747 -3.0975 21 1 0.4754 -4.7031 -4.7340 22 1 -0.2041 -7.0221 -4.9379 23 1 -0.3633 0.0005 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.7621 2.1070 -0.0004 27 1 3.1571 -3.6122 -0.8127 28 1 4.0713 -3.6578 -3.5564 29 1 2.8068 -4.1973 -4.6870 30 1 2.7803 -2.5359 -4.0489 31 1 1.2773 -8.4068 -3.1561 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725567356.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:13 Heat of formation + Delta-G solvation = -13.038919 kcal Electronic energy + Delta-G solvation = -15118.814630 eV Core-core repulsion = 12605.884816 eV Total energy + Delta-G solvation = -2512.929814 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -37.04407 -34.02511 -32.75722 -30.95311 -28.62666 -26.65935 -25.07571 -24.05120 -20.32606 -19.23677 -17.61784 -16.42658 -15.43634 -14.31319 -13.81631 -13.53875 -12.54999 -12.27368 -11.60504 -11.44126 -11.34345 -11.06844 -10.68343 -10.46259 -10.08467 -9.97686 -9.64542 -9.29030 -9.19960 -8.88766 -8.80176 -8.58504 -8.10982 -7.88286 -7.61585 -7.26679 -6.66173 -6.11826 -5.34969 -5.15623 -3.10850 -2.32960 4.18034 4.25535 4.42736 4.43441 4.93765 5.38678 5.73633 6.11216 6.47416 6.52360 7.26730 7.38246 7.48331 7.59350 7.70246 7.91550 8.02334 8.05094 8.15630 8.37641 8.54758 8.59537 8.72838 8.76824 9.10636 9.35589 9.53431 9.60720 9.92274 10.12706 10.50893 10.60847 11.28186 11.97888 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.006621 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.625946 B = 4227.989937 C = 4551.844691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.133 4.133 3 C -0.177 4.177 4 S -0.151 6.151 5 C -0.773 4.773 6 H 0.103 0.897 7 C 0.082 3.918 8 H 0.007 0.993 9 C 0.508 3.492 10 O -0.602 6.602 11 N -0.711 5.711 12 C 0.230 3.770 13 H 0.039 0.961 14 C -0.143 4.143 15 C -0.503 4.503 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.910 5.910 19 Si 0.876 3.124 20 H -0.276 1.276 21 H -0.259 1.259 22 H -0.294 1.294 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.390 0.610 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.029 0.971 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 6.130 -0.015 7.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.150 4.150 3 C -0.310 4.310 4 S 0.097 5.903 5 C -0.902 4.902 6 H 0.121 0.879 7 C 0.060 3.940 8 H 0.024 0.976 9 C 0.298 3.702 10 O -0.486 6.486 11 N -0.358 5.358 12 C 0.126 3.874 13 H 0.057 0.943 14 C -0.202 4.202 15 C -0.541 4.541 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.550 5.550 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.183 1.183 22 H -0.221 1.221 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.222 0.778 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.682 7.009 -0.624 7.942 hybrid contribution -1.595 -1.005 -0.467 1.942 sum -5.277 6.004 -1.091 8.068 Atomic orbital electron populations 1.20447 0.93345 1.01678 0.98834 1.20987 0.94672 0.94719 1.04643 1.24171 0.97991 0.98472 1.10339 1.81779 1.04628 1.15133 1.88729 1.24116 0.90965 0.85869 1.89214 0.87948 1.17580 0.94981 0.90471 0.91011 0.97623 1.22651 0.77618 0.80045 0.89907 1.90367 1.36950 1.70525 1.50763 1.46214 1.44834 1.19326 1.25416 1.18866 0.94851 0.90362 0.83355 0.94348 1.22174 1.00407 0.98325 0.99295 1.21294 1.14394 0.88568 1.29878 0.90587 1.24916 0.97316 0.94715 0.96042 1.69952 1.39187 0.99733 1.46146 0.86852 0.83772 0.78177 0.80802 1.20154 1.18348 1.22060 0.94219 0.94048 0.91424 0.86311 0.77762 0.93924 0.94058 0.95177 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.89 9.71 36.00 0.35 -2.54 16 2 C -0.13 -5.21 4.95 -101.85 -0.50 -5.71 16 3 C -0.18 -6.70 10.81 29.05 0.31 -6.39 16 4 S -0.15 -6.01 22.98 -107.50 -2.47 -8.49 16 5 C -0.77 -33.71 11.21 36.08 0.40 -33.31 16 6 H 0.10 4.59 8.06 -52.48 -0.42 4.17 16 7 C 0.08 3.47 2.90 -94.80 -0.27 3.19 16 8 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 9 C 0.51 21.91 6.90 -10.98 -0.08 21.84 16 10 O -0.60 -26.81 14.03 5.56 0.08 -26.73 16 11 N -0.71 -29.79 4.95 -54.93 -0.27 -30.07 16 12 C 0.23 9.55 2.16 -69.09 -0.15 9.40 16 13 H 0.04 1.66 4.89 -51.93 -0.25 1.41 16 14 C -0.14 -5.61 9.44 37.16 0.35 -5.26 16 15 C -0.50 -21.23 9.05 -34.44 -0.31 -21.54 16 16 H 0.08 3.33 8.06 -52.49 -0.42 2.91 16 17 C 0.07 2.88 5.47 -17.82 -0.10 2.78 16 18 N -0.91 -37.62 13.96 55.43 0.77 -36.85 16 19 Si 0.88 32.42 26.74 -169.99 -4.55 27.88 16 20 H -0.28 -10.21 7.11 56.52 0.40 -9.80 16 21 H -0.26 -9.70 6.87 56.52 0.39 -9.31 16 22 H -0.29 -10.25 7.11 56.52 0.40 -9.85 16 23 H 0.04 1.23 8.14 -51.92 -0.42 0.81 16 24 H 0.04 1.31 8.10 -51.93 -0.42 0.89 16 25 H 0.07 2.46 6.50 -51.93 -0.34 2.12 16 26 H 0.12 3.99 8.06 -52.49 -0.42 3.57 16 27 H 0.39 16.00 8.41 -40.82 -0.34 15.66 16 28 H 0.04 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.04 1.52 7.92 -51.93 -0.41 1.11 16 30 H 0.03 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.26 9.99 8.31 -40.82 -0.34 9.66 16 LS Contribution 277.20 15.07 4.18 4.18 Total: -2.00 -86.36 277.20 -6.13 -92.49 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -3.87 Total: 15.12 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 0.01 Total: -37.53 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: 0.50 Total: -66.91 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: 0.08 Total: -26.73 kcal Atomic # 14 Polarization: 32.42 SS G_CDS: -4.55 Total: 27.88 kcal Atomic # 16 Polarization: -6.01 SS G_CDS: -2.47 Total: -8.49 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -86.36 -6.13 -92.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567356.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.449 kcal (2) G-P(sol) polarization free energy of solvation -86.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds