Wall clock time and date at job start Mon Mar 30 2020 04:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.30883 * 121.50897 * 2 1 4 4 S 1.76449 * 109.81716 * 179.97438 * 3 2 1 5 5 C 1.76981 * 96.89522 * 359.97438 * 4 3 2 6 6 H 1.08003 * 127.54605 * 180.02562 * 5 4 3 7 7 C 1.49000 * 121.51162 * 179.97438 * 2 1 3 8 8 H 1.09002 * 109.10247 * 300.43055 * 7 2 1 9 9 C 1.50708 * 109.10020 * 59.51018 * 7 2 1 10 10 O 1.21276 * 119.99877 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99851 * 180.02562 * 9 7 2 12 12 C 1.46493 * 120.00036 * 180.02562 * 11 9 7 13 13 H 1.09006 * 109.47194 * 325.00105 * 12 11 9 14 14 C 1.52997 * 109.47181 * 84.99862 * 12 11 9 15 15 C 1.50703 * 109.47210 * 204.99937 * 12 11 9 16 16 H 1.07989 * 119.99917 * 325.87345 * 15 12 11 17 17 C 1.37877 * 119.99665 * 145.87315 * 15 12 11 18 18 N 1.31518 * 119.99718 * 177.64134 * 17 15 12 19 19 Si 1.86798 * 120.00409 * 357.63523 * 17 15 12 20 20 H 1.48496 * 109.47597 * 274.92748 * 19 17 15 21 21 H 1.48509 * 109.46806 * 34.92742 * 19 17 15 22 22 H 1.48500 * 109.47336 * 154.92335 * 19 17 15 23 23 H 1.09008 * 109.47042 * 270.02584 * 1 2 3 24 24 H 1.08995 * 109.47526 * 30.02371 * 1 2 3 25 25 H 1.09001 * 109.47486 * 150.02700 * 1 2 3 26 26 H 1.07999 * 125.09065 * 359.97310 * 3 2 1 27 27 H 0.96997 * 120.00102 * 0.02562 * 11 9 7 28 28 H 1.09000 * 109.47220 * 56.13495 * 14 12 11 29 29 H 1.09000 * 109.47341 * 176.13400 * 14 12 11 30 30 H 1.08996 * 109.47554 * 296.13783 * 14 12 11 31 31 H 0.97004 * 119.99814 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1910 1.1159 0.0000 4 16 3.9189 0.7583 0.0007 5 6 3.7709 -1.0053 0.0019 6 1 4.5692 -1.7328 0.0030 7 6 2.2857 -1.2703 0.0006 8 1 2.0274 -1.8467 0.8889 9 6 1.9275 -2.0689 -1.2263 10 8 1.1163 -1.6352 -2.0166 11 7 2.5086 -3.2651 -1.4450 12 6 2.1608 -4.0412 -2.6378 13 1 1.1066 -3.8936 -2.8728 14 6 3.0163 -3.5745 -3.8173 15 6 2.4177 -5.5033 -2.3784 16 1 3.2418 -5.8032 -1.7482 17 6 1.6006 -6.4581 -2.9457 18 7 1.8524 -7.7351 -2.7573 19 14 0.1360 -5.9379 -3.9818 20 1 -1.0276 -5.6747 -3.0975 21 1 0.4754 -4.7031 -4.7340 22 1 -0.2041 -7.0221 -4.9379 23 1 -0.3633 0.0005 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.7621 2.1070 -0.0004 27 1 3.1571 -3.6122 -0.8127 28 1 4.0713 -3.6578 -3.5564 29 1 2.8068 -4.1973 -4.6870 30 1 2.7803 -2.5359 -4.0489 31 1 1.2773 -8.4068 -3.1561 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725567356.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:11 Heat of formation + Delta-G solvation = -85.030895 kcal Electronic energy + Delta-G solvation = -15121.936437 eV Core-core repulsion = 12605.884816 eV Total energy + Delta-G solvation = -2516.051621 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.080 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.40649 -37.18974 -36.03626 -34.25101 -31.88269 -29.78488 -28.02264 -27.30933 -23.66033 -22.48654 -20.94202 -19.59087 -18.67639 -17.49359 -17.13449 -16.73140 -15.70437 -15.53075 -14.69221 -14.53106 -14.44693 -14.28013 -13.63553 -13.40211 -13.27067 -12.98481 -12.77462 -12.52021 -12.38016 -12.01202 -11.80443 -11.74712 -11.22190 -11.19346 -10.83733 -10.49448 -9.99254 -9.49312 -8.51105 -8.36064 -6.41747 -5.70695 1.26628 1.32687 1.41995 1.49567 1.89311 2.31365 2.33813 2.84942 3.21172 3.22095 4.35705 4.40203 4.53004 4.73070 4.81471 4.82272 4.85299 4.91370 5.08557 5.17634 5.30529 5.37502 5.51561 5.64581 5.94677 6.04691 6.27176 6.31064 6.57373 6.67647 7.20910 7.24269 7.86934 8.80796 Molecular weight = 240.08amu Principal moments of inertia in cm(-1) A = 0.038157 B = 0.006621 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.625946 B = 4227.989937 C = 4551.844691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.153 4.153 3 C -0.165 4.165 4 S -0.148 6.148 5 C -0.815 4.815 6 H 0.073 0.927 7 C 0.075 3.925 8 H -0.004 1.004 9 C 0.504 3.496 10 O -0.616 6.616 11 N -0.711 5.711 12 C 0.234 3.766 13 H 0.026 0.974 14 C -0.134 4.134 15 C -0.530 4.530 16 H 0.042 0.958 17 C 0.032 3.968 18 N -0.931 5.931 19 Si 0.938 3.062 20 H -0.275 1.275 21 H -0.265 1.265 22 H -0.252 1.252 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.173 0.827 27 H 0.390 0.610 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.485 7.319 -1.005 9.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.170 4.170 3 C -0.297 4.297 4 S 0.099 5.901 5 C -0.944 4.944 6 H 0.091 0.909 7 C 0.052 3.948 8 H 0.013 0.987 9 C 0.294 3.706 10 O -0.501 6.501 11 N -0.358 5.358 12 C 0.130 3.870 13 H 0.044 0.956 14 C -0.193 4.193 15 C -0.568 4.568 16 H 0.061 0.939 17 C -0.168 4.168 18 N -0.570 5.570 19 Si 0.762 3.238 20 H -0.201 1.201 21 H -0.189 1.189 22 H -0.176 1.176 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.190 0.810 27 H 0.222 0.778 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.914 8.159 -1.612 10.205 hybrid contribution -0.852 -1.472 -0.088 1.703 sum -6.765 6.686 -1.700 9.663 Atomic orbital electron populations 1.20439 0.89817 1.02016 1.01282 1.21300 0.97278 0.93471 1.04901 1.24672 0.96107 1.00564 1.08391 1.81527 1.07177 1.11735 1.89637 1.24155 0.91389 0.88365 1.90499 0.90868 1.17689 0.94742 0.92269 0.90071 0.98691 1.22809 0.77435 0.80224 0.90134 1.90337 1.37561 1.70896 1.51299 1.46314 1.44521 1.19222 1.25718 1.18864 0.94448 0.89944 0.83752 0.95570 1.22074 1.00052 0.98034 0.99147 1.21176 1.14837 0.89409 1.31424 0.93924 1.25662 0.99768 0.94557 0.96773 1.70000 1.40249 1.00703 1.46044 0.85902 0.79533 0.78776 0.79629 1.20064 1.18935 1.17647 0.90618 0.90770 0.93959 0.81010 0.77813 0.93786 0.91962 0.95977 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -4.91 9.71 71.23 0.69 -4.22 16 2 C -0.15 -11.48 4.95 -16.89 -0.08 -11.56 16 3 C -0.17 -11.74 10.81 67.90 0.73 -11.01 16 4 S -0.15 -11.44 22.98 -56.49 -1.30 -12.73 16 5 C -0.81 -71.10 11.21 71.29 0.80 -70.30 16 6 H 0.07 6.69 8.06 -2.91 -0.02 6.67 16 7 C 0.07 6.24 2.90 -13.50 -0.04 6.20 16 8 H 0.00 -0.35 8.14 -2.39 -0.02 -0.37 16 9 C 0.50 43.08 6.90 87.66 0.60 43.69 16 10 O -0.62 -53.73 14.03 -3.02 -0.04 -53.78 16 11 N -0.71 -59.76 4.95 -446.10 -2.21 -61.96 16 12 C 0.23 19.24 2.16 44.25 0.10 19.33 16 13 H 0.03 2.23 4.89 -2.38 -0.01 2.22 16 14 C -0.13 -10.34 9.44 71.98 0.68 -9.66 16 15 C -0.53 -44.68 9.05 25.60 0.23 -44.45 16 16 H 0.04 3.80 8.06 -2.92 -0.02 3.78 16 17 C 0.03 2.56 5.47 84.65 0.46 3.02 16 18 N -0.93 -75.14 13.96 21.45 0.30 -74.84 16 19 Si 0.94 65.17 26.74 68.60 1.83 67.00 16 20 H -0.27 -19.07 7.11 99.48 0.71 -18.37 16 21 H -0.26 -18.63 6.87 99.48 0.68 -17.95 16 22 H -0.25 -15.83 7.11 99.48 0.71 -15.12 16 23 H 0.08 4.30 8.14 -2.38 -0.02 4.29 16 24 H 0.07 4.26 8.10 -2.39 -0.02 4.24 16 25 H 0.04 2.91 6.50 -2.39 -0.02 2.89 16 26 H 0.17 10.33 8.06 -2.91 -0.02 10.31 16 27 H 0.39 32.52 8.41 -92.71 -0.78 31.74 16 28 H 0.04 3.29 8.14 -2.39 -0.02 3.28 16 29 H 0.06 4.46 7.92 -2.39 -0.02 4.44 16 30 H 0.02 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.27 20.38 8.31 -92.71 -0.77 19.61 16 Total: -2.00 -175.06 277.20 3.10 -171.96 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: 0.33 Total: 43.29 kcal Atomic # 6 Polarization: -83.12 SS G_CDS: 4.18 Total: -78.95 kcal Atomic # 7 Polarization: -134.89 SS G_CDS: -1.91 Total: -136.80 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.04 Total: -53.78 kcal Atomic # 14 Polarization: 65.17 SS G_CDS: 1.83 Total: 67.00 kcal Atomic # 16 Polarization: -11.44 SS G_CDS: -1.30 Total: -12.73 kcal Total: -175.06 3.10 -171.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725567356.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.932 kcal (2) G-P(sol) polarization free energy of solvation -175.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -171.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds