Wall clock time and date at job start Mon Mar 30 2020 04:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46844 * 2 1 4 4 N 1.27942 * 120.00153 * 335.00174 * 3 2 1 5 5 Si 1.86798 * 119.99716 * 155.00255 * 3 2 1 6 6 H 1.48506 * 109.47297 * 269.99799 * 5 3 2 7 7 H 1.48503 * 109.47261 * 149.99980 * 5 3 2 8 8 H 1.48500 * 109.47454 * 29.99973 * 5 3 2 9 9 C 1.50698 * 109.46918 * 240.00186 * 2 1 3 10 10 O 1.21289 * 120.00051 * 120.00045 * 9 2 1 11 11 N 1.34776 * 120.00446 * 299.99514 * 9 2 1 12 12 C 1.46497 * 120.00371 * 179.97438 * 11 9 2 13 13 H 1.08998 * 109.46884 * 35.00701 * 12 11 9 14 14 C 1.52994 * 109.47378 * 275.00340 * 12 11 9 15 15 C 1.52999 * 109.47033 * 155.00276 * 12 11 9 16 16 H 1.08999 * 109.08884 * 60.89805 * 15 12 11 17 17 C 1.50872 * 109.10700 * 301.90725 * 15 12 11 18 18 H 1.07995 * 127.54234 * 59.44767 * 17 15 12 19 19 S 1.76976 * 104.91213 * 239.49256 * 17 15 12 20 20 C 1.76454 * 96.89832 * 359.97438 * 19 17 15 21 21 C 1.30880 * 109.81464 * 0.02562 * 20 19 17 22 22 H 1.09000 * 109.46576 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47122 * 299.99276 * 1 2 3 24 24 H 1.08994 * 109.47249 * 59.99781 * 1 2 3 25 25 H 1.08994 * 109.47249 * 120.00219 * 2 1 3 26 26 H 0.96998 * 120.00089 * 179.97438 * 4 3 2 27 27 H 0.97006 * 119.99595 * 0.02562 * 11 9 2 28 28 H 1.08998 * 109.47250 * 180.02562 * 14 12 11 29 29 H 1.08998 * 109.47408 * 300.00040 * 14 12 11 30 30 H 1.08998 * 109.47204 * 59.99688 * 14 12 11 31 31 H 1.08002 * 125.09392 * 180.02562 * 20 19 17 32 32 H 1.08003 * 121.51009 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.2987 2.3587 -0.4682 5 14 3.7260 1.8127 0.6836 6 1 3.6170 2.1138 2.1338 7 1 4.2857 2.9911 -0.0258 8 1 4.6217 0.6448 0.4865 9 6 2.0323 -0.7104 -1.2305 10 8 2.7296 -0.1209 -2.0289 11 7 1.7068 -2.0007 -1.4438 12 6 2.1946 -2.6911 -2.6403 13 1 3.1937 -2.3309 -2.8856 14 6 1.2501 -2.4119 -3.8110 15 6 2.2464 -4.1970 -2.3747 16 1 1.2420 -4.5533 -2.1458 17 6 3.1428 -4.4590 -1.1898 18 1 3.0280 -4.0863 -0.1827 19 16 4.4241 -5.5095 -1.8115 20 6 3.8378 -5.5981 -3.4734 21 6 2.7432 -4.8911 -3.5960 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.6219 3.2733 -0.4679 27 1 1.1489 -2.4721 -0.8055 28 1 1.6128 -2.9259 -4.7011 29 1 0.2510 -2.7720 -3.5657 30 1 1.2132 -1.3391 -4.0002 31 1 4.3112 -6.1526 -4.2702 32 1 2.2231 -4.8149 -4.5395 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725570700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:08 Heat of formation + Delta-G solvation = -9.012413 kcal Electronic energy + Delta-G solvation = -15534.807980 eV Core-core repulsion = 13008.397028 eV Total energy + Delta-G solvation = -2526.410951 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.35066 -36.45771 -35.44627 -33.15035 -31.78487 -29.18320 -26.58952 -25.10569 -22.14403 -21.14737 -19.95213 -18.98216 -17.55876 -16.75521 -16.26660 -15.35816 -15.02004 -14.39044 -13.81831 -13.62026 -13.43149 -13.07650 -12.35557 -12.23831 -12.04728 -11.88370 -11.65448 -11.19144 -11.10159 -11.07292 -10.51540 -10.44536 -10.19106 -10.12412 -9.57980 -9.05722 -8.84047 -8.70131 -8.17501 -7.82313 -6.47179 -3.32239 1.86232 2.13547 2.39947 2.65689 3.03576 3.35235 3.45063 3.91618 4.13744 4.60314 5.28359 5.34008 5.46386 5.57084 5.83412 6.03970 6.12184 6.13547 6.30094 6.32854 6.40371 6.47267 6.67056 6.86398 6.95628 7.10357 7.40074 7.73240 7.73488 7.94998 8.05872 8.44806 8.64826 9.04097 9.15320 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.007046 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.222094 B = 3973.190436 C = 4366.228657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C 0.026 3.974 4 N -0.629 5.629 5 Si 0.935 3.065 6 H -0.246 1.246 7 H -0.249 1.249 8 H -0.227 1.227 9 C 0.521 3.479 10 O -0.556 6.556 11 N -0.688 5.688 12 C 0.143 3.857 13 H 0.071 0.929 14 C -0.160 4.160 15 C 0.094 3.906 16 H -0.011 1.011 17 C -0.782 4.782 18 H 0.097 0.903 19 S -0.137 6.137 20 C -0.162 4.162 21 C -0.208 4.208 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.332 0.668 27 H 0.395 0.605 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.121 0.879 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 9.208 3.612 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.110 4.110 3 C -0.224 4.224 4 N -0.241 5.241 5 Si 0.751 3.249 6 H -0.170 1.170 7 H -0.172 1.172 8 H -0.149 1.149 9 C 0.305 3.695 10 O -0.435 6.435 11 N -0.334 5.334 12 C 0.038 3.962 13 H 0.089 0.911 14 C -0.218 4.218 15 C 0.074 3.926 16 H 0.007 0.993 17 C -0.910 4.910 18 H 0.115 0.885 19 S 0.111 5.889 20 C -0.295 4.295 21 C -0.246 4.246 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.128 0.872 26 H 0.148 0.852 27 H 0.228 0.772 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.882 9.295 3.626 10.385 hybrid contribution -1.036 0.779 -0.406 1.358 sum -3.918 10.074 3.221 11.279 Atomic orbital electron populations 1.21562 0.91726 1.01832 1.03324 1.20597 0.98744 0.92683 0.98979 1.29739 1.03285 0.95834 0.93496 1.68117 1.38349 1.04928 1.12660 0.85690 0.76860 0.82824 0.79539 1.17026 1.17177 1.14870 1.19991 0.80505 0.82537 0.86474 1.90609 1.39024 1.66419 1.47481 1.45841 1.51539 1.10288 1.25746 1.21854 0.95712 0.97075 0.81554 0.91087 1.22256 0.99808 1.00096 0.99683 1.17697 0.96223 0.87867 0.90859 0.99338 1.24241 1.16020 1.52273 0.98466 0.88508 1.82170 1.40933 1.62290 1.03475 1.24540 1.00872 1.04332 0.99799 1.22335 0.99385 1.04066 0.98791 0.92247 0.91989 0.91179 0.87237 0.85168 0.77183 0.92412 0.93769 0.94087 0.86074 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.58 37.16 0.32 -1.36 16 2 C -0.09 -1.35 2.66 -92.92 -0.25 -1.59 16 3 C 0.03 0.38 4.17 -13.90 -0.06 0.32 16 4 N -0.63 -8.99 12.70 56.23 0.71 -8.27 16 5 Si 0.93 12.27 29.14 -169.99 -4.95 7.32 16 6 H -0.25 -2.83 7.11 56.52 0.40 -2.43 16 7 H -0.25 -3.24 7.11 56.52 0.40 -2.84 16 8 H -0.23 -3.59 7.11 56.52 0.40 -3.19 16 9 C 0.52 10.51 7.03 -10.99 -0.08 10.43 16 10 O -0.56 -13.05 15.41 5.55 0.09 -12.96 16 11 N -0.69 -14.43 4.48 -53.81 -0.24 -14.67 16 12 C 0.14 3.39 2.13 -67.94 -0.14 3.25 16 13 H 0.07 1.94 7.58 -51.93 -0.39 1.55 16 14 C -0.16 -3.29 9.22 37.15 0.34 -2.95 16 15 C 0.09 2.47 2.35 -93.65 -0.22 2.25 16 16 H -0.01 -0.29 8.14 -51.93 -0.42 -0.71 16 17 C -0.78 -23.08 11.02 36.09 0.40 -22.69 16 18 H 0.10 2.97 8.06 -52.49 -0.42 2.55 16 19 S -0.14 -3.84 22.98 -107.50 -2.47 -6.31 16 20 C -0.16 -4.09 11.14 29.05 0.32 -3.76 16 21 C -0.21 -5.21 8.83 -36.80 -0.33 -5.54 16 22 H 0.06 0.73 7.56 -51.93 -0.39 0.33 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.03 7.79 -51.93 -0.40 0.62 16 25 H 0.11 1.43 7.85 -51.93 -0.41 1.03 16 26 H 0.33 3.95 8.23 -40.82 -0.34 3.61 16 27 H 0.39 7.58 8.00 -40.82 -0.33 7.26 16 28 H 0.06 1.14 6.60 -51.93 -0.34 0.79 16 29 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 32 H 0.09 2.08 7.00 -52.48 -0.37 1.72 16 LS Contribution 282.45 15.07 4.26 4.26 Total: -1.00 -32.05 282.45 -6.60 -38.65 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -4.30 Total: 13.62 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 0.31 Total: -21.64 kcal Atomic # 7 Polarization: -23.41 SS G_CDS: 0.47 Total: -22.94 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 12.27 SS G_CDS: -4.95 Total: 7.32 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.47 Total: -6.31 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -32.05 -6.60 -38.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725570700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.642 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds