Wall clock time and date at job start Mon Mar 30 2020 04:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46844 * 2 1 4 4 N 1.27942 * 120.00153 * 335.00174 * 3 2 1 5 5 Si 1.86798 * 119.99716 * 155.00255 * 3 2 1 6 6 H 1.48506 * 109.47297 * 269.99799 * 5 3 2 7 7 H 1.48503 * 109.47261 * 149.99980 * 5 3 2 8 8 H 1.48500 * 109.47454 * 29.99973 * 5 3 2 9 9 C 1.50698 * 109.46918 * 240.00186 * 2 1 3 10 10 O 1.21289 * 120.00051 * 120.00045 * 9 2 1 11 11 N 1.34776 * 120.00446 * 299.99514 * 9 2 1 12 12 C 1.46497 * 120.00371 * 179.97438 * 11 9 2 13 13 H 1.08998 * 109.46884 * 35.00701 * 12 11 9 14 14 C 1.52994 * 109.47378 * 275.00340 * 12 11 9 15 15 C 1.52999 * 109.47033 * 155.00276 * 12 11 9 16 16 H 1.08999 * 109.08884 * 60.89805 * 15 12 11 17 17 C 1.50872 * 109.10700 * 301.90725 * 15 12 11 18 18 H 1.07995 * 127.54234 * 59.44767 * 17 15 12 19 19 S 1.76976 * 104.91213 * 239.49256 * 17 15 12 20 20 C 1.76454 * 96.89832 * 359.97438 * 19 17 15 21 21 C 1.30880 * 109.81464 * 0.02562 * 20 19 17 22 22 H 1.09000 * 109.46576 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47122 * 299.99276 * 1 2 3 24 24 H 1.08994 * 109.47249 * 59.99781 * 1 2 3 25 25 H 1.08994 * 109.47249 * 120.00219 * 2 1 3 26 26 H 0.96998 * 120.00089 * 179.97438 * 4 3 2 27 27 H 0.97006 * 119.99595 * 0.02562 * 11 9 2 28 28 H 1.08998 * 109.47250 * 180.02562 * 14 12 11 29 29 H 1.08998 * 109.47408 * 300.00040 * 14 12 11 30 30 H 1.08998 * 109.47204 * 59.99688 * 14 12 11 31 31 H 1.08002 * 125.09392 * 180.02562 * 20 19 17 32 32 H 1.08003 * 121.51009 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 1.2987 2.3587 -0.4682 5 14 3.7260 1.8127 0.6836 6 1 3.6170 2.1138 2.1338 7 1 4.2857 2.9911 -0.0258 8 1 4.6217 0.6448 0.4865 9 6 2.0323 -0.7104 -1.2305 10 8 2.7296 -0.1209 -2.0289 11 7 1.7068 -2.0007 -1.4438 12 6 2.1946 -2.6911 -2.6403 13 1 3.1937 -2.3309 -2.8856 14 6 1.2501 -2.4119 -3.8110 15 6 2.2464 -4.1970 -2.3747 16 1 1.2420 -4.5533 -2.1458 17 6 3.1428 -4.4590 -1.1898 18 1 3.0280 -4.0863 -0.1827 19 16 4.4241 -5.5095 -1.8115 20 6 3.8378 -5.5981 -3.4734 21 6 2.7432 -4.8911 -3.5960 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 1.6219 3.2733 -0.4679 27 1 1.1489 -2.4721 -0.8055 28 1 1.6128 -2.9259 -4.7011 29 1 0.2510 -2.7720 -3.5657 30 1 1.2132 -1.3391 -4.0002 31 1 4.3112 -6.1526 -4.2702 32 1 2.2231 -4.8149 -4.5395 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725570700.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:07 Heat of formation + Delta-G solvation = -30.337830 kcal Electronic energy + Delta-G solvation = -15535.732719 eV Core-core repulsion = 13008.397028 eV Total energy + Delta-G solvation = -2527.335691 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95686 -38.15928 -36.90249 -34.94831 -33.13006 -30.85993 -28.57715 -26.27208 -23.81324 -23.17184 -21.64480 -20.49108 -19.41736 -18.15268 -17.67622 -17.11597 -16.87574 -15.93341 -15.34675 -15.09524 -14.79658 -14.74228 -14.03604 -13.89611 -13.22687 -13.07604 -12.99053 -12.86730 -12.48979 -12.31762 -12.27970 -12.22524 -12.06939 -11.62840 -11.55522 -10.88750 -10.61106 -10.18056 -9.87848 -9.71018 -8.66065 -5.59035 0.75720 1.05668 1.33637 1.43682 1.58293 1.78014 1.85590 2.00035 2.59748 3.37261 3.45743 3.96025 4.14977 4.30118 4.31716 4.45430 4.56396 4.63264 4.72471 4.77574 4.97924 5.04842 5.07160 5.12877 5.17191 5.39625 5.54017 5.69830 5.79323 6.06884 6.42230 6.78842 6.89953 6.91118 7.41922 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.007046 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.222094 B = 3973.190436 C = 4366.228657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.088 4.088 3 C 0.012 3.988 4 N -0.634 5.634 5 Si 0.966 3.034 6 H -0.211 1.211 7 H -0.247 1.247 8 H -0.276 1.276 9 C 0.515 3.485 10 O -0.593 6.593 11 N -0.690 5.690 12 C 0.155 3.845 13 H 0.028 0.972 14 C -0.148 4.148 15 C 0.089 3.911 16 H -0.011 1.011 17 C -0.823 4.823 18 H 0.071 0.929 19 S -0.186 6.186 20 C -0.160 4.160 21 C -0.203 4.203 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.054 0.946 25 H 0.132 0.868 26 H 0.346 0.654 27 H 0.403 0.597 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.162 0.838 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 9.940 3.185 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.110 4.110 3 C -0.237 4.237 4 N -0.247 5.247 5 Si 0.783 3.217 6 H -0.133 1.133 7 H -0.170 1.170 8 H -0.200 1.200 9 C 0.301 3.699 10 O -0.475 6.475 11 N -0.337 5.337 12 C 0.049 3.951 13 H 0.046 0.954 14 C -0.207 4.207 15 C 0.069 3.931 16 H 0.006 0.994 17 C -0.951 4.951 18 H 0.089 0.911 19 S 0.060 5.940 20 C -0.293 4.293 21 C -0.238 4.238 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.073 0.927 25 H 0.150 0.850 26 H 0.163 0.837 27 H 0.238 0.762 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.179 0.821 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.308 10.054 3.213 11.401 hybrid contribution -0.608 0.529 -0.340 0.875 sum -4.916 10.583 2.873 12.018 Atomic orbital electron populations 1.21540 0.89843 1.02595 1.03761 1.20690 1.00279 0.92959 0.97046 1.29922 1.04136 0.95478 0.94135 1.68069 1.38883 1.05734 1.11992 0.85323 0.74319 0.80607 0.81490 1.13324 1.17037 1.20010 1.20825 0.79511 0.82050 0.87494 1.90582 1.40612 1.67126 1.49221 1.45810 1.51691 1.10818 1.25417 1.21306 0.94756 0.95169 0.83879 0.95371 1.22126 0.99844 1.00217 0.98466 1.17713 0.95258 0.89625 0.90531 0.99392 1.24256 1.17969 1.54077 0.98828 0.91098 1.82179 1.41847 1.63295 1.06712 1.24906 1.00927 1.04766 0.98665 1.22738 0.99118 1.02263 0.99664 0.91367 0.89538 0.92661 0.85007 0.83690 0.76208 0.91238 0.91849 0.94301 0.82055 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.58 71.98 0.62 -2.30 16 2 C -0.09 -2.59 2.66 -12.29 -0.03 -2.63 16 3 C 0.01 0.34 4.17 88.67 0.37 0.71 16 4 N -0.63 -17.00 12.70 24.11 0.31 -16.69 16 5 Si 0.97 24.22 29.14 68.60 2.00 26.22 16 6 H -0.21 -4.12 7.11 99.48 0.71 -3.41 16 7 H -0.25 -6.08 7.11 99.48 0.71 -5.38 16 8 H -0.28 -9.10 7.11 99.48 0.71 -8.40 16 9 C 0.52 20.77 7.03 87.66 0.62 21.39 16 10 O -0.59 -28.26 15.41 -3.06 -0.05 -28.31 16 11 N -0.69 -28.93 4.48 -442.55 -1.98 -30.92 16 12 C 0.15 7.30 2.13 44.99 0.10 7.40 16 13 H 0.03 1.57 7.58 -2.39 -0.02 1.55 16 14 C -0.15 -5.78 9.22 71.98 0.66 -5.12 16 15 C 0.09 4.62 2.35 -12.76 -0.03 4.59 16 16 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 17 C -0.82 -49.64 11.02 71.29 0.79 -48.85 16 18 H 0.07 4.53 8.06 -2.91 -0.02 4.51 16 19 S -0.19 -10.51 22.98 -56.49 -1.30 -11.81 16 20 C -0.16 -7.74 11.14 67.90 0.76 -6.98 16 21 C -0.20 -9.63 8.83 25.24 0.22 -9.40 16 22 H 0.07 1.53 7.56 -2.39 -0.02 1.51 16 23 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.52 7.79 -2.39 -0.02 1.50 16 25 H 0.13 3.27 7.85 -2.39 -0.02 3.25 16 26 H 0.35 7.55 8.23 -92.71 -0.76 6.79 16 27 H 0.40 15.39 8.00 -92.70 -0.74 14.64 16 28 H 0.07 2.52 6.60 -2.39 -0.02 2.50 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.16 6.40 8.06 -2.91 -0.02 6.38 16 32 H 0.13 5.31 7.00 -2.91 -0.02 5.29 16 Total: -1.00 -70.62 282.45 3.42 -67.20 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: 0.38 Total: 35.51 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 4.07 Total: -41.20 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -1.68 Total: -47.61 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: 2.00 Total: 26.22 kcal Atomic # 16 Polarization: -10.51 SS G_CDS: -1.30 Total: -11.81 kcal Total: -70.62 3.42 -67.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725570700.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.860 kcal (2) G-P(sol) polarization free energy of solvation -70.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds