Wall clock time and date at job start Mon Mar 30 2020 04:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46546 * 2 1 4 4 N 1.46503 * 109.47313 * 65.00542 * 3 2 1 5 5 C 1.34780 * 119.99371 * 274.99489 * 4 3 2 6 6 O 1.21276 * 120.00388 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99742 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.08440 * 57.64798 * 7 5 4 9 9 C 1.50867 * 109.10227 * 298.55262 * 7 5 4 10 10 H 1.07993 * 127.54612 * 59.46878 * 9 7 5 11 11 S 1.76987 * 104.90829 * 239.48832 * 9 7 5 12 12 C 1.76451 * 96.89532 * 359.97438 * 11 9 7 13 13 C 1.30883 * 109.81550 * 0.02562 * 12 11 9 14 14 C 1.50701 * 121.50571 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.46886 * 185.00175 * 3 2 1 16 16 N 1.27947 * 119.99709 * 235.00197 * 15 3 2 17 17 Si 1.86800 * 119.99941 * 55.00306 * 15 3 2 18 18 H 1.48508 * 109.46685 * 269.99646 * 17 15 3 19 19 H 1.48494 * 109.47357 * 29.99725 * 17 15 3 20 20 H 1.48494 * 109.47227 * 150.00243 * 17 15 3 21 21 H 1.09004 * 109.47514 * 60.00337 * 1 2 3 22 22 H 1.09004 * 109.46736 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47138 * 299.99783 * 1 2 3 24 24 H 1.08997 * 109.47138 * 240.00217 * 2 1 3 25 25 H 1.09000 * 109.47093 * 119.99889 * 2 1 3 26 26 H 1.09001 * 109.47319 * 304.99947 * 3 2 1 27 27 H 0.96990 * 120.00248 * 94.99929 * 4 3 2 28 28 H 1.08012 * 125.09288 * 180.02562 * 12 11 9 29 29 H 1.09005 * 109.47232 * 269.97568 * 14 13 12 30 30 H 1.09000 * 109.47759 * 29.97582 * 14 13 12 31 31 H 1.09000 * 109.47342 * 149.97702 * 14 13 12 32 32 H 0.97001 * 119.99976 * 359.97438 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.6523 2.0975 1.2519 5 6 0.4350 2.6643 1.3670 6 8 -0.3397 2.6318 0.4345 7 6 0.0361 3.3376 2.6549 8 1 0.7552 4.1242 2.8835 9 6 0.0473 2.3196 3.7683 10 1 0.8826 1.7257 4.1085 11 16 -1.6081 2.3112 4.3944 12 6 -2.2558 3.5318 3.2970 13 6 -1.3133 3.9472 2.4894 14 6 -1.5808 4.9953 1.4401 15 6 3.5418 1.4444 -0.1239 16 7 4.2547 2.0541 0.7463 17 14 4.3627 0.5567 -1.5478 18 1 4.6449 -0.8484 -1.1584 19 1 3.4601 0.5718 -2.7269 20 1 5.6355 1.2406 -1.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6052 1.9815 -0.8418 27 1 2.2718 2.1232 1.9977 28 1 -3.2770 3.8835 3.2925 29 1 -1.8959 4.5117 0.5154 30 1 -2.3686 5.6641 1.7870 31 1 -0.6715 5.5683 1.2588 32 1 3.8284 2.5154 1.4854 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725580724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:56 Heat of formation + Delta-G solvation = -9.370066 kcal Electronic energy + Delta-G solvation = -15867.379437 eV Core-core repulsion = 13340.952977 eV Total energy + Delta-G solvation = -2526.426460 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.26051 -36.75781 -34.65541 -33.14847 -31.68657 -28.52529 -26.67308 -26.03330 -21.68707 -21.51422 -20.29331 -19.20277 -17.65313 -16.34103 -15.88279 -15.19119 -14.85524 -14.42711 -14.20073 -13.17070 -12.99804 -12.72681 -12.36839 -12.28853 -11.87769 -11.71423 -11.47205 -11.39453 -11.21599 -10.99695 -10.58938 -10.36968 -10.24713 -10.07408 -9.79649 -9.33403 -9.05929 -8.50218 -8.15866 -8.03723 -6.44344 -3.54494 1.91101 2.14347 2.48904 2.77933 2.79795 3.34755 3.86182 4.04262 4.20066 4.90894 5.33989 5.42576 5.50245 5.76896 5.91754 6.07970 6.17036 6.24360 6.33510 6.40698 6.52784 6.57603 6.62843 6.73166 6.90328 7.10914 7.19593 7.31183 7.58015 7.94460 7.97618 8.28150 8.51337 8.88023 9.51777 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.035146 B = 0.007407 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.475909 B = 3779.109645 C = 3816.816924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.111 3.889 4 N -0.736 5.736 5 C 0.519 3.481 6 O -0.568 6.568 7 C 0.089 3.911 8 H 0.007 0.993 9 C -0.769 4.769 10 H 0.102 0.898 11 S -0.130 6.130 12 C -0.164 4.164 13 C -0.150 4.150 14 C -0.079 4.079 15 C -0.043 4.043 16 N -0.635 5.635 17 Si 1.078 2.922 18 H -0.248 1.248 19 H -0.248 1.248 20 H -0.252 1.252 21 H 0.055 0.945 22 H 0.039 0.961 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.391 0.609 28 H 0.125 0.875 29 H 0.062 0.938 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 -2.422 -8.996 11.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.003 3.997 4 N -0.391 5.391 5 C 0.311 3.689 6 O -0.447 6.447 7 C 0.067 3.933 8 H 0.024 0.976 9 C -0.898 4.898 10 H 0.120 0.880 11 S 0.120 5.880 12 C -0.298 4.298 13 C -0.168 4.168 14 C -0.139 4.139 15 C -0.288 4.288 16 N -0.250 5.250 17 Si 0.892 3.108 18 H -0.171 1.171 19 H -0.171 1.171 20 H -0.176 1.176 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.226 0.774 28 H 0.143 0.857 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.329 -3.454 -9.075 11.590 hybrid contribution -0.401 1.150 0.219 1.237 sum 5.928 -2.304 -8.855 10.903 Atomic orbital electron populations 1.21796 0.93976 1.00120 1.04212 1.21792 0.98104 0.95148 1.01217 1.21041 0.93213 0.94762 0.90655 1.46288 1.18469 1.59878 1.14470 1.23309 0.78730 0.76716 0.90139 1.90469 1.50935 1.61667 1.41638 1.17591 0.91592 0.94130 0.90019 0.97573 1.24181 0.94236 1.42666 1.28755 0.87993 1.82134 1.14623 1.46945 1.44343 1.24297 0.99734 1.03433 1.02287 1.20852 0.95502 1.01163 0.99269 1.20381 0.99589 0.96123 0.97802 1.32228 0.95663 0.96801 1.04139 1.69362 1.43186 1.07005 1.05406 0.83433 0.77890 0.77486 0.72018 1.17143 1.17139 1.17608 0.92600 0.94196 0.90555 0.92109 0.91807 0.88029 0.77405 0.85718 0.91911 0.93938 0.93846 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.51 37.16 0.32 -2.43 16 2 C -0.12 -2.02 5.30 -26.73 -0.14 -2.16 16 3 C 0.11 1.93 2.37 -69.08 -0.16 1.77 16 4 N -0.74 -15.35 4.60 -54.93 -0.25 -15.60 16 5 C 0.52 12.85 5.55 -10.98 -0.06 12.79 16 6 O -0.57 -14.64 11.92 5.56 0.07 -14.58 16 7 C 0.09 2.41 2.88 -94.81 -0.27 2.14 16 8 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 9 C -0.77 -22.68 11.34 36.09 0.41 -22.27 16 10 H 0.10 3.10 8.06 -52.49 -0.42 2.68 16 11 S -0.13 -3.63 22.98 -107.50 -2.47 -6.11 16 12 C -0.16 -4.26 10.81 29.05 0.31 -3.95 16 13 C -0.15 -3.88 4.92 -101.85 -0.50 -4.38 16 14 C -0.08 -1.73 9.32 36.01 0.34 -1.40 16 15 C -0.04 -0.64 5.37 -13.89 -0.07 -0.71 16 16 N -0.63 -10.07 13.39 56.23 0.75 -9.31 16 17 Si 1.08 11.61 28.12 -169.99 -4.78 6.83 16 18 H -0.25 -2.53 7.11 56.52 0.40 -2.13 16 19 H -0.25 -2.46 7.11 56.52 0.40 -2.06 16 20 H -0.25 -2.75 7.11 56.52 0.40 -2.35 16 21 H 0.05 1.06 7.85 -51.93 -0.41 0.66 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.83 5.64 -51.93 -0.29 1.53 16 24 H 0.06 0.78 6.41 -51.93 -0.33 0.45 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.10 1.83 7.58 -51.93 -0.39 1.43 16 27 H 0.39 7.94 6.62 -40.82 -0.27 7.67 16 28 H 0.12 2.83 8.06 -52.48 -0.42 2.40 16 29 H 0.06 1.39 7.43 -51.93 -0.39 1.00 16 30 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.33 5.39 6.35 -40.82 -0.26 5.13 16 LS Contribution 273.35 15.07 4.12 4.12 Total: -1.00 -30.82 273.35 -6.50 -37.32 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -4.09 Total: 17.93 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 0.16 Total: -20.60 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.50 Total: -24.92 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.07 Total: -14.58 kcal Atomic # 14 Polarization: 11.61 SS G_CDS: -4.78 Total: 6.83 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.47 Total: -6.11 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.82 -6.50 -37.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725580724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.953 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds