Wall clock time and date at job start Mon Mar 30 2020 04:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46546 * 2 1 4 4 N 1.46503 * 109.47313 * 65.00542 * 3 2 1 5 5 C 1.34780 * 119.99371 * 274.99489 * 4 3 2 6 6 O 1.21276 * 120.00388 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99742 * 179.97438 * 5 4 3 8 8 H 1.09000 * 109.08440 * 57.64798 * 7 5 4 9 9 C 1.50867 * 109.10227 * 298.55262 * 7 5 4 10 10 H 1.07993 * 127.54612 * 59.46878 * 9 7 5 11 11 S 1.76987 * 104.90829 * 239.48832 * 9 7 5 12 12 C 1.76451 * 96.89532 * 359.97438 * 11 9 7 13 13 C 1.30883 * 109.81550 * 0.02562 * 12 11 9 14 14 C 1.50701 * 121.50571 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.46886 * 185.00175 * 3 2 1 16 16 N 1.27947 * 119.99709 * 235.00197 * 15 3 2 17 17 Si 1.86800 * 119.99941 * 55.00306 * 15 3 2 18 18 H 1.48508 * 109.46685 * 269.99646 * 17 15 3 19 19 H 1.48494 * 109.47357 * 29.99725 * 17 15 3 20 20 H 1.48494 * 109.47227 * 150.00243 * 17 15 3 21 21 H 1.09004 * 109.47514 * 60.00337 * 1 2 3 22 22 H 1.09004 * 109.46736 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47138 * 299.99783 * 1 2 3 24 24 H 1.08997 * 109.47138 * 240.00217 * 2 1 3 25 25 H 1.09000 * 109.47093 * 119.99889 * 2 1 3 26 26 H 1.09001 * 109.47319 * 304.99947 * 3 2 1 27 27 H 0.96990 * 120.00248 * 94.99929 * 4 3 2 28 28 H 1.08012 * 125.09288 * 180.02562 * 12 11 9 29 29 H 1.09005 * 109.47232 * 269.97568 * 14 13 12 30 30 H 1.09000 * 109.47759 * 29.97582 * 14 13 12 31 31 H 1.09000 * 109.47342 * 149.97702 * 14 13 12 32 32 H 0.97001 * 119.99976 * 359.97438 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.6523 2.0975 1.2519 5 6 0.4350 2.6643 1.3670 6 8 -0.3397 2.6318 0.4345 7 6 0.0361 3.3376 2.6549 8 1 0.7552 4.1242 2.8835 9 6 0.0473 2.3196 3.7683 10 1 0.8826 1.7257 4.1085 11 16 -1.6081 2.3112 4.3944 12 6 -2.2558 3.5318 3.2970 13 6 -1.3133 3.9472 2.4894 14 6 -1.5808 4.9953 1.4401 15 6 3.5418 1.4444 -0.1239 16 7 4.2547 2.0541 0.7463 17 14 4.3627 0.5567 -1.5478 18 1 4.6449 -0.8484 -1.1584 19 1 3.4601 0.5718 -2.7269 20 1 5.6355 1.2406 -1.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6052 1.9815 -0.8418 27 1 2.2718 2.1232 1.9977 28 1 -3.2770 3.8835 3.2925 29 1 -1.8959 4.5117 0.5154 30 1 -2.3686 5.6641 1.7870 31 1 -0.6715 5.5683 1.2588 32 1 3.8284 2.5154 1.4854 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725580724.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:55 Heat of formation + Delta-G solvation = -29.715966 kcal Electronic energy + Delta-G solvation = -15868.261702 eV Core-core repulsion = 13340.952977 eV Total energy + Delta-G solvation = -2527.308725 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04520 -38.38727 -36.58440 -34.57478 -33.38434 -30.44912 -28.36698 -27.77630 -23.67026 -22.90370 -22.03268 -20.80975 -19.49153 -18.08383 -17.68404 -17.11556 -16.32312 -15.79841 -15.70780 -14.97121 -14.81312 -14.16901 -14.11065 -13.74672 -13.41654 -13.40778 -12.95038 -12.71833 -12.57927 -12.46924 -12.22189 -12.06331 -11.85991 -11.66885 -11.43221 -11.34790 -10.58526 -10.36455 -10.13002 -9.85427 -8.63169 -5.82741 0.83141 1.21076 1.31991 1.70477 1.77648 1.90870 1.96770 2.07926 2.53969 3.14455 3.55617 4.01931 4.09947 4.25310 4.31773 4.43918 4.54354 4.63588 4.72504 4.81215 4.82846 4.89609 4.95805 5.05252 5.12761 5.20457 5.49228 5.54144 5.63910 5.84133 6.12559 6.55601 6.63798 6.72086 7.57757 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.035146 B = 0.007407 C = 0.007334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.475909 B = 3779.109645 C = 3816.816924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.103 3.897 4 N -0.731 5.731 5 C 0.525 3.475 6 O -0.580 6.580 7 C 0.077 3.923 8 H -0.004 1.004 9 C -0.807 4.807 10 H 0.078 0.922 11 S -0.164 6.164 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.073 4.073 15 C -0.046 4.046 16 N -0.651 5.651 17 Si 1.111 2.889 18 H -0.232 1.232 19 H -0.226 1.226 20 H -0.255 1.255 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.022 0.978 24 H 0.109 0.891 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.391 0.609 28 H 0.161 0.839 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 -2.736 -11.469 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C -0.004 4.004 4 N -0.384 5.384 5 C 0.316 3.684 6 O -0.461 6.461 7 C 0.054 3.946 8 H 0.014 0.986 9 C -0.936 4.936 10 H 0.096 0.904 11 S 0.083 5.917 12 C -0.300 4.300 13 C -0.171 4.171 14 C -0.132 4.132 15 C -0.286 4.286 16 N -0.265 5.265 17 Si 0.918 3.082 18 H -0.154 1.154 19 H -0.148 1.148 20 H -0.178 1.178 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.042 0.958 24 H 0.127 0.873 25 H 0.078 0.922 26 H 0.118 0.882 27 H 0.226 0.774 28 H 0.179 0.821 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.738 -3.756 -11.543 13.883 hybrid contribution -0.501 1.299 0.989 1.707 sum 6.237 -2.458 -10.554 12.503 Atomic orbital electron populations 1.21693 0.95950 1.00583 1.01357 1.21819 0.96193 0.94670 1.03352 1.21400 0.95525 0.95105 0.88367 1.46109 1.17194 1.59128 1.16001 1.22350 0.79926 0.77116 0.89039 1.90448 1.51522 1.62391 1.41708 1.17643 0.92606 0.93564 0.90766 0.98632 1.24096 0.94524 1.43995 1.31002 0.90405 1.82031 1.14278 1.49222 1.46153 1.24651 1.01460 1.02564 1.01375 1.21330 0.94672 1.01407 0.99698 1.20386 1.01160 0.95376 0.96272 1.33375 0.93871 0.96263 1.05113 1.69430 1.43002 1.08210 1.05829 0.83205 0.77523 0.77290 0.70190 1.15448 1.14846 1.17819 0.92802 0.92148 0.95850 0.87318 0.92218 0.88230 0.77378 0.82119 0.92033 0.90603 0.93080 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.51 71.98 0.61 -4.53 16 2 C -0.12 -3.71 5.30 30.59 0.16 -3.55 16 3 C 0.10 3.44 2.37 44.25 0.10 3.54 16 4 N -0.73 -30.84 4.60 -446.08 -2.05 -32.89 16 5 C 0.53 26.31 5.55 87.66 0.49 26.80 16 6 O -0.58 -29.83 11.92 -3.02 -0.04 -29.87 16 7 C 0.08 4.23 2.88 -13.51 -0.04 4.19 16 8 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 9 C -0.81 -49.44 11.34 71.29 0.81 -48.63 16 10 H 0.08 5.01 8.06 -2.91 -0.02 4.99 16 11 S -0.16 -9.36 22.98 -56.49 -1.30 -10.66 16 12 C -0.17 -8.56 10.81 67.90 0.73 -7.83 16 13 C -0.15 -7.90 4.92 -16.90 -0.08 -7.98 16 14 C -0.07 -3.00 9.32 71.24 0.66 -2.33 16 15 C -0.05 -1.26 5.37 88.68 0.48 -0.78 16 16 N -0.65 -20.16 13.39 24.11 0.32 -19.83 16 17 Si 1.11 19.48 28.12 68.60 1.93 21.40 16 18 H -0.23 -3.59 7.11 99.48 0.71 -2.89 16 19 H -0.23 -3.28 7.11 99.48 0.71 -2.57 16 20 H -0.25 -4.65 7.11 99.48 0.71 -3.94 16 21 H 0.05 1.98 7.85 -2.38 -0.02 1.96 16 22 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.02 1.10 5.64 -2.39 -0.01 1.08 16 24 H 0.11 2.32 6.41 -2.39 -0.02 2.30 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.10 3.41 7.58 -2.39 -0.02 3.40 16 27 H 0.39 16.42 6.62 -92.72 -0.61 15.81 16 28 H 0.16 6.87 8.06 -2.90 -0.02 6.84 16 29 H 0.06 2.59 7.43 -2.38 -0.02 2.57 16 30 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 32 H 0.31 10.56 6.35 -92.71 -0.59 9.97 16 Total: -1.00 -68.74 273.35 3.48 -65.26 By element: Atomic # 1 Polarization: 46.99 SS G_CDS: 0.69 Total: 47.68 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 3.93 Total: -41.10 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -1.73 Total: -52.72 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.04 Total: -29.87 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: 1.93 Total: 21.40 kcal Atomic # 16 Polarization: -9.36 SS G_CDS: -1.30 Total: -10.66 kcal Total: -68.74 3.48 -65.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725580724.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.543 kcal (2) G-P(sol) polarization free energy of solvation -68.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds