Wall clock time and date at job start Mon Mar 30 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 5 5 C 1.34777 * 120.00660 * 275.00187 * 4 3 2 6 6 O 1.21281 * 119.99633 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00373 * 179.97438 * 5 4 3 8 8 H 1.08996 * 109.08771 * 300.70115 * 7 5 4 9 9 C 1.50865 * 109.10115 * 59.80465 * 7 5 4 10 10 H 1.07997 * 127.54782 * 300.46528 * 9 7 5 11 11 S 1.76768 * 105.01773 * 120.53148 * 9 7 5 12 12 C 1.76462 * 96.87362 * 359.93120 * 11 9 7 13 13 C 1.30881 * 109.81429 * 0.04208 * 12 11 9 14 14 C 1.50703 * 121.50316 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 16 16 N 1.27948 * 120.00035 * 85.00152 * 15 3 2 17 17 Si 1.86803 * 119.99976 * 264.99992 * 15 3 2 18 18 H 1.48496 * 109.47144 * 89.99875 * 17 15 3 19 19 H 1.48500 * 109.47206 * 210.00047 * 17 15 3 20 20 H 1.48504 * 109.46925 * 329.99769 * 17 15 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 27 27 H 0.97010 * 119.99804 * 95.00047 * 4 3 2 28 28 H 1.07998 * 125.09094 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.47240 * 269.97702 * 14 13 12 30 30 H 1.09004 * 109.46903 * 29.98043 * 14 13 12 31 31 H 1.09001 * 109.46507 * 149.97767 * 14 13 12 32 32 H 0.97003 * 119.99475 * 180.02562 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.6524 2.0975 1.2518 5 6 0.4351 2.6644 1.3670 6 8 -0.3397 2.6319 0.4345 7 6 0.0362 3.3376 2.6549 8 1 0.0815 2.6108 3.4659 9 6 1.0009 4.4609 2.9441 10 1 2.0696 4.3913 3.0835 11 16 0.0018 5.9178 3.0075 12 6 -1.5428 5.1289 2.6822 13 6 -1.3601 3.8420 2.5294 14 6 -2.5103 2.9124 2.2392 15 6 3.5419 1.4444 -0.1239 16 7 4.0886 1.3807 -1.2789 17 14 4.6054 1.5396 1.4089 18 1 4.8956 0.1672 1.8961 19 1 5.8798 2.2298 1.0851 20 1 3.8861 2.2977 2.4640 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6053 1.9816 -0.8418 27 1 2.2720 2.1231 1.9978 28 1 -2.4960 5.6326 2.6189 29 1 -2.9288 2.5482 3.1774 30 1 -3.2789 3.4482 1.6821 31 1 -2.1548 2.0684 1.6480 32 1 5.0553 1.3816 -1.3586 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725580725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:05 Heat of formation + Delta-G solvation = -6.240990 kcal Electronic energy + Delta-G solvation = -15859.344461 eV Core-core repulsion = 13333.053687 eV Total energy + Delta-G solvation = -2526.290773 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -39.07271 -36.57337 -34.67624 -33.57686 -31.67110 -28.55539 -26.72165 -25.84620 -21.94998 -21.21877 -19.88762 -19.58878 -17.21792 -16.60433 -15.66388 -15.29170 -14.83643 -14.39773 -14.01148 -13.41071 -13.19631 -12.88078 -12.64412 -12.27523 -11.78811 -11.66329 -11.56122 -11.39032 -11.00147 -10.95272 -10.54370 -10.46655 -10.17564 -10.01462 -9.73811 -9.22816 -8.79612 -8.41089 -8.11311 -7.96375 -6.39832 -3.48872 1.79869 2.06409 2.33024 2.65124 2.87949 3.39759 3.91698 4.09918 4.23676 4.76206 5.40257 5.48535 5.52857 5.74350 5.99054 6.12510 6.26537 6.28645 6.33119 6.40550 6.52379 6.58147 6.61664 6.80853 6.87308 7.04092 7.28073 7.44159 7.63972 7.89403 8.01924 8.34355 8.62841 8.93298 9.61014 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.009370 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.454665 B = 2987.400465 C = 3719.684625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C 0.172 3.828 4 N -0.736 5.736 5 C 0.519 3.481 6 O -0.568 6.568 7 C 0.088 3.912 8 H 0.010 0.990 9 C -0.773 4.773 10 H 0.103 0.897 11 S -0.132 6.132 12 C -0.165 4.165 13 C -0.149 4.149 14 C -0.082 4.082 15 C -0.002 4.002 16 N -0.632 5.632 17 Si 0.917 3.083 18 H -0.237 1.237 19 H -0.247 1.247 20 H -0.216 1.216 21 H 0.039 0.961 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.393 0.607 28 H 0.124 0.876 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.491 -8.648 -2.047 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.066 3.934 4 N -0.394 5.394 5 C 0.310 3.690 6 O -0.447 6.447 7 C 0.066 3.934 8 H 0.027 0.973 9 C -0.902 4.902 10 H 0.120 0.880 11 S 0.118 5.882 12 C -0.298 4.298 13 C -0.167 4.167 14 C -0.142 4.142 15 C -0.251 4.251 16 N -0.245 5.245 17 Si 0.733 3.267 18 H -0.161 1.161 19 H -0.170 1.170 20 H -0.139 1.139 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.231 0.769 28 H 0.142 0.858 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.518 -7.319 -2.706 9.017 hybrid contribution 0.668 -1.311 0.149 1.479 sum 5.186 -8.631 -2.556 10.388 Atomic orbital electron populations 1.21793 0.94356 0.99841 1.03916 1.21816 0.97484 0.95150 1.01503 1.19829 0.88537 0.94315 0.90754 1.46622 1.18928 1.59430 1.14415 1.23265 0.79272 0.73080 0.93341 1.90478 1.52002 1.59502 1.42716 1.17569 0.90269 0.96235 0.89323 0.97257 1.24183 0.95089 0.87128 1.83808 0.87950 1.82077 1.00418 1.20953 1.84757 1.24309 0.99771 0.97540 1.08170 1.20862 0.95257 0.94309 1.06236 1.20428 0.95622 0.98939 0.99196 1.30666 1.01756 0.91352 1.01328 1.68118 1.18205 1.10023 1.28165 0.85850 0.78746 0.82484 0.79577 1.16060 1.17020 1.13876 0.94158 0.91576 0.92148 0.92251 0.91522 0.87915 0.76882 0.85772 0.93967 0.93652 0.91842 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.51 37.16 0.32 -2.10 16 2 C -0.12 -1.87 5.59 -26.73 -0.15 -2.02 16 3 C 0.17 3.10 2.55 -69.09 -0.18 2.92 16 4 N -0.74 -15.39 4.69 -54.93 -0.26 -15.64 16 5 C 0.52 12.88 5.46 -10.99 -0.06 12.82 16 6 O -0.57 -14.74 11.57 5.56 0.06 -14.68 16 7 C 0.09 2.39 2.90 -94.81 -0.27 2.11 16 8 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 9 C -0.77 -22.84 11.26 36.09 0.41 -22.43 16 10 H 0.10 3.09 8.06 -52.49 -0.42 2.67 16 11 S -0.13 -3.69 22.98 -107.50 -2.47 -6.16 16 12 C -0.16 -4.28 10.81 29.05 0.31 -3.97 16 13 C -0.15 -3.85 4.94 -101.84 -0.50 -4.35 16 14 C -0.08 -1.78 9.72 36.01 0.35 -1.43 16 15 C 0.00 -0.03 5.01 -13.90 -0.07 -0.09 16 16 N -0.63 -9.26 13.82 56.23 0.78 -8.48 16 17 Si 0.92 12.19 27.86 -169.99 -4.74 7.45 16 18 H -0.24 -2.84 7.11 56.52 0.40 -2.44 16 19 H -0.25 -3.15 7.11 56.52 0.40 -2.75 16 20 H -0.22 -3.38 5.82 56.52 0.33 -3.05 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 1.29 5.64 -51.93 -0.29 1.00 16 23 H 0.06 1.10 7.85 -51.93 -0.41 0.70 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.10 2.12 7.58 -51.93 -0.39 1.73 16 27 H 0.39 7.82 4.88 -40.82 -0.20 7.62 16 28 H 0.12 2.83 8.06 -52.49 -0.42 2.40 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.06 1.39 6.55 -51.93 -0.34 1.05 16 32 H 0.33 3.94 8.23 -40.82 -0.34 3.61 16 LS Contribution 273.34 15.07 4.12 4.12 Total: -1.00 -31.02 273.34 -6.57 -37.58 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -4.22 Total: 14.37 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 0.15 Total: -18.55 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.52 Total: -24.12 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.06 Total: -14.68 kcal Atomic # 14 Polarization: 12.19 SS G_CDS: -4.74 Total: 7.45 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -2.47 Total: -6.16 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.02 -6.57 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725580725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.344 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds