Wall clock time and date at job start Mon Mar 30 2020 04:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46497 * 109.47195 * 64.99866 * 3 2 1 5 5 C 1.34777 * 120.00660 * 275.00187 * 4 3 2 6 6 O 1.21281 * 119.99633 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.00373 * 179.97438 * 5 4 3 8 8 H 1.08996 * 109.08771 * 300.70115 * 7 5 4 9 9 C 1.50865 * 109.10115 * 59.80465 * 7 5 4 10 10 H 1.07997 * 127.54782 * 300.46528 * 9 7 5 11 11 S 1.76768 * 105.01773 * 120.53148 * 9 7 5 12 12 C 1.76462 * 96.87362 * 359.93120 * 11 9 7 13 13 C 1.30881 * 109.81429 * 0.04208 * 12 11 9 14 14 C 1.50703 * 121.50316 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 16 16 N 1.27948 * 120.00035 * 85.00152 * 15 3 2 17 17 Si 1.86803 * 119.99976 * 264.99992 * 15 3 2 18 18 H 1.48496 * 109.47144 * 89.99875 * 17 15 3 19 19 H 1.48500 * 109.47206 * 210.00047 * 17 15 3 20 20 H 1.48504 * 109.46925 * 329.99769 * 17 15 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 26 26 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 27 27 H 0.97010 * 119.99804 * 95.00047 * 4 3 2 28 28 H 1.07998 * 125.09094 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.47240 * 269.97702 * 14 13 12 30 30 H 1.09004 * 109.46903 * 29.98043 * 14 13 12 31 31 H 1.09001 * 109.46507 * 149.97767 * 14 13 12 32 32 H 0.97003 * 119.99475 * 180.02562 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.6524 2.0975 1.2518 5 6 0.4351 2.6644 1.3670 6 8 -0.3397 2.6319 0.4345 7 6 0.0362 3.3376 2.6549 8 1 0.0815 2.6108 3.4659 9 6 1.0009 4.4609 2.9441 10 1 2.0696 4.3913 3.0835 11 16 0.0018 5.9178 3.0075 12 6 -1.5428 5.1289 2.6822 13 6 -1.3601 3.8420 2.5294 14 6 -2.5103 2.9124 2.2392 15 6 3.5419 1.4444 -0.1239 16 7 4.0886 1.3807 -1.2789 17 14 4.6054 1.5396 1.4089 18 1 4.8956 0.1672 1.8961 19 1 5.8798 2.2298 1.0851 20 1 3.8861 2.2977 2.4640 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8934 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6053 1.9816 -0.8418 27 1 2.2720 2.1231 1.9978 28 1 -2.4960 5.6326 2.6189 29 1 -2.9288 2.5482 3.1774 30 1 -3.2789 3.4482 1.6821 31 1 -2.1548 2.0684 1.6480 32 1 5.0553 1.3816 -1.3586 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725580725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:03 Heat of formation + Delta-G solvation = -26.644294 kcal Electronic energy + Delta-G solvation = -15860.229214 eV Core-core repulsion = 13333.053687 eV Total energy + Delta-G solvation = -2527.175527 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 5.13 seconds Orbital eigenvalues (eV) -40.88931 -38.14046 -36.52275 -35.10728 -33.23328 -30.44118 -28.41122 -27.58585 -23.59161 -22.97108 -21.43817 -21.32801 -19.12174 -18.03298 -17.52853 -17.12820 -16.43469 -16.03084 -15.35636 -15.09685 -14.78000 -14.55520 -14.00940 -13.95728 -13.64198 -13.37383 -12.91039 -12.66260 -12.57463 -12.33563 -12.19131 -12.05064 -11.81916 -11.79828 -11.42522 -11.25868 -10.50122 -10.10480 -10.01573 -9.74698 -8.57485 -5.75764 0.65563 0.94213 1.27350 1.37620 1.56460 1.81502 1.83850 2.17339 2.60154 3.21920 3.43345 4.13849 4.21348 4.33206 4.40014 4.51846 4.63393 4.72598 4.80124 4.88893 4.90986 4.97677 5.04090 5.14532 5.22500 5.24780 5.53054 5.62260 5.75539 5.93144 6.20528 6.64439 6.74963 6.85319 7.67992 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.026200 B = 0.009370 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.454665 B = 2987.400465 C = 3719.684625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.169 3.831 4 N -0.729 5.729 5 C 0.523 3.477 6 O -0.582 6.582 7 C 0.076 3.924 8 H 0.007 0.993 9 C -0.812 4.812 10 H 0.082 0.918 11 S -0.169 6.169 12 C -0.171 4.171 13 C -0.151 4.151 14 C -0.077 4.077 15 C -0.014 4.014 16 N -0.637 5.637 17 Si 0.953 3.047 18 H -0.205 1.205 19 H -0.234 1.234 20 H -0.259 1.259 21 H 0.068 0.932 22 H 0.037 0.963 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.398 0.602 28 H 0.159 0.841 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 -10.545 -2.548 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C 0.063 3.937 4 N -0.385 5.385 5 C 0.313 3.687 6 O -0.464 6.464 7 C 0.054 3.946 8 H 0.024 0.976 9 C -0.941 4.941 10 H 0.100 0.900 11 S 0.078 5.922 12 C -0.304 4.304 13 C -0.167 4.167 14 C -0.136 4.136 15 C -0.262 4.262 16 N -0.251 5.251 17 Si 0.769 3.231 18 H -0.127 1.127 19 H -0.157 1.157 20 H -0.185 1.185 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.237 0.763 28 H 0.177 0.823 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.701 -9.267 -3.235 10.884 hybrid contribution 0.604 -0.756 0.273 1.005 sum 5.305 -10.023 -2.961 11.721 Atomic orbital electron populations 1.21721 0.95393 1.00917 1.01505 1.21809 0.96473 0.93633 1.03530 1.19933 0.90814 0.95117 0.87816 1.46455 1.17694 1.58560 1.15826 1.22410 0.80545 0.73651 0.92051 1.90466 1.52783 1.60390 1.42724 1.17630 0.90930 0.95743 0.90341 0.97576 1.24167 0.94818 0.88845 1.86301 0.90016 1.81999 1.02435 1.21371 1.86420 1.24644 0.99784 0.97522 1.08405 1.21361 0.95958 0.95257 1.04160 1.20448 0.94390 0.97967 1.00808 1.30659 1.00371 0.92242 1.02896 1.68024 1.19780 1.09076 1.28245 0.85405 0.77831 0.83596 0.76280 1.12669 1.15680 1.18471 0.91312 0.94373 0.94087 0.90094 0.89432 0.91028 0.76312 0.82335 0.91117 0.91759 0.92387 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.51 71.98 0.61 -3.90 16 2 C -0.11 -3.36 5.59 30.59 0.17 -3.19 16 3 C 0.17 5.96 2.55 44.24 0.11 6.07 16 4 N -0.73 -30.60 4.69 -446.10 -2.09 -32.69 16 5 C 0.52 26.20 5.46 87.66 0.48 26.67 16 6 O -0.58 -30.38 11.57 -3.03 -0.04 -30.41 16 7 C 0.08 4.15 2.90 -13.51 -0.04 4.11 16 8 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 9 C -0.81 -49.42 11.26 71.29 0.80 -48.62 16 10 H 0.08 5.17 8.06 -2.91 -0.02 5.15 16 11 S -0.17 -9.66 22.98 -56.49 -1.30 -10.96 16 12 C -0.17 -8.73 10.81 67.90 0.73 -8.00 16 13 C -0.15 -7.67 4.94 -16.89 -0.08 -7.75 16 14 C -0.08 -3.14 9.72 71.24 0.69 -2.45 16 15 C -0.01 -0.40 5.01 88.67 0.44 0.05 16 16 N -0.64 -17.31 13.82 24.11 0.33 -16.98 16 17 Si 0.95 23.36 27.86 68.60 1.91 25.28 16 18 H -0.20 -4.03 7.11 99.48 0.71 -3.32 16 19 H -0.23 -5.29 7.11 99.48 0.71 -4.58 16 20 H -0.26 -8.24 5.82 99.48 0.58 -7.66 16 21 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.04 1.45 5.64 -2.39 -0.01 1.44 16 23 H 0.04 1.47 7.85 -2.39 -0.02 1.45 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.07 2.99 7.58 -2.39 -0.02 2.97 16 27 H 0.40 16.04 4.88 -92.70 -0.45 15.59 16 28 H 0.16 6.83 8.06 -2.91 -0.02 6.80 16 29 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 30 H 0.06 2.38 8.10 -2.38 -0.02 2.36 16 31 H 0.06 2.45 6.55 -2.39 -0.02 2.43 16 32 H 0.35 7.39 8.23 -92.71 -0.76 6.63 16 Total: -1.00 -67.93 273.34 3.29 -64.64 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: 0.55 Total: 38.13 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 3.93 Total: -37.00 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -1.76 Total: -49.67 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.04 Total: -30.41 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: 1.91 Total: 25.28 kcal Atomic # 16 Polarization: -9.66 SS G_CDS: -1.30 Total: -10.96 kcal Total: -67.93 3.29 -64.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725580725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.999 kcal (2) G-P(sol) polarization free energy of solvation -67.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.13 seconds