Wall clock time and date at job start Mon Mar 30 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.83553 * 111.22750 * 2 1 4 4 C 1.77561 * 96.35112 * 265.43199 * 3 2 1 5 5 C 1.31316 * 108.14220 * 345.21599 * 4 3 2 6 6 C 1.50695 * 120.76908 * 179.82723 * 5 4 3 7 7 N 1.46495 * 109.47516 * 94.97782 * 6 5 4 8 8 C 1.34773 * 120.00407 * 180.02562 * 7 6 5 9 9 O 1.21691 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.46372 * 120.00238 * 179.97438 * 8 7 6 11 11 H 1.08003 * 120.00209 * 0.02562 * 10 8 7 12 12 C 1.40052 * 120.00071 * 179.97438 * 10 8 7 13 13 N 1.30675 * 120.00151 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99996 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47136 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46995 * 120.00377 * 14 12 10 17 17 H 1.48501 * 109.47015 * 240.00188 * 14 12 10 18 18 C 1.49617 * 118.46536 * 359.80369 * 5 4 3 19 19 H 1.09002 * 109.46825 * 138.98655 * 18 5 4 20 20 C 1.52997 * 109.42544 * 258.94588 * 18 5 4 21 21 H 1.09001 * 109.47032 * 171.01181 * 1 2 3 22 22 H 1.08998 * 109.47618 * 291.01171 * 1 2 3 23 23 H 1.09001 * 109.46961 * 51.01391 * 1 2 3 24 24 H 1.08993 * 111.07330 * 124.52218 * 2 1 3 25 25 H 1.08004 * 125.92732 * 165.23954 * 4 3 2 26 26 H 1.09004 * 109.47366 * 214.97868 * 6 5 4 27 27 H 1.09006 * 109.47191 * 334.97098 * 6 5 4 28 28 H 0.97003 * 119.99728 * 0.02562 * 7 6 5 29 29 H 0.96993 * 120.00065 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.46847 * 179.33526 * 20 18 5 31 31 H 1.09000 * 109.47654 * 299.33449 * 20 18 5 32 32 H 1.09007 * 109.47142 * 59.33794 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1946 1.7110 0.0000 4 6 2.3967 1.8432 -1.7591 5 6 2.3149 0.6371 -2.2719 6 6 2.4445 0.4205 -3.7575 7 7 3.8319 0.0803 -4.0823 8 6 4.1859 -0.1577 -5.3608 9 8 3.3530 -0.0905 -6.2454 10 6 5.5723 -0.4971 -5.6853 11 1 6.3115 -0.5572 -4.9002 12 6 5.9400 -0.7450 -7.0137 13 7 5.0455 -0.6728 -7.9636 14 14 7.7094 -1.1774 -7.4279 15 1 8.5194 -1.1936 -6.1834 16 1 7.7552 -2.5179 -8.0653 17 1 8.2602 -0.1650 -8.3644 18 6 2.0905 -0.5173 -1.3469 19 1 1.3773 -1.2089 -1.7955 20 6 3.4170 -1.2397 -1.1035 21 1 -0.3633 -1.0151 -0.1606 22 1 -0.3634 0.3685 0.9593 23 1 -0.3633 0.6465 -0.7988 24 1 1.9219 -0.5764 0.8379 25 1 2.5592 2.7570 -2.3114 26 1 1.7892 -0.3946 -4.0645 27 1 2.1612 1.3322 -4.2837 28 1 4.4958 0.0264 -3.3771 29 1 5.3003 -0.8441 -8.8837 30 1 3.2565 -2.0738 -0.4204 31 1 3.8055 -1.6150 -2.0503 32 1 4.1342 -0.5449 -0.6664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725585273.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:54 Heat of formation + Delta-G solvation = -35.164813 kcal Electronic energy + Delta-G solvation = -15091.252874 eV Core-core repulsion = 12563.707870 eV Total energy + Delta-G solvation = -2527.545004 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.54591 -36.86557 -33.58254 -32.42380 -31.27922 -29.97186 -27.08606 -25.00247 -24.08002 -21.87598 -19.70227 -18.71962 -17.35315 -16.83122 -15.35651 -15.01568 -14.66318 -14.01206 -13.96971 -13.80616 -13.55250 -12.98156 -12.77588 -12.27818 -12.16794 -11.75462 -11.69962 -11.25964 -11.19117 -11.11276 -10.89136 -10.70556 -10.44284 -10.25481 -10.19206 -9.81533 -8.87058 -7.71983 -7.52664 -7.33854 -6.19599 -4.65342 1.66792 1.95999 2.37848 3.12396 3.20804 3.25301 4.10864 4.36794 4.57224 4.65932 4.74029 5.07699 5.12643 5.34562 5.42115 5.50597 5.56343 5.66714 5.71724 5.82099 5.94088 5.98725 6.10031 6.20235 6.32524 6.44673 6.73219 7.42542 7.91101 8.06215 8.31916 9.01518 9.51559 10.58398 10.76719 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.045265 B = 0.005202 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.426415 B = 5381.428585 C = 5510.397076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 S -0.202 6.202 4 C -0.122 4.122 5 C -0.132 4.132 6 C 0.183 3.817 7 N -0.761 5.761 8 C 0.554 3.446 9 O -0.581 6.581 10 C -0.544 4.544 11 H 0.068 0.932 12 C 0.088 3.912 13 N -0.768 5.768 14 Si 0.907 3.093 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.061 4.061 19 H 0.093 0.907 20 C -0.144 4.144 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.114 0.886 25 H 0.162 0.838 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.381 0.619 29 H 0.268 0.732 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.943 0.215 14.951 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 S 0.037 5.963 4 C -0.253 4.253 5 C -0.142 4.142 6 C 0.056 3.944 7 N -0.418 5.418 8 C 0.358 3.642 9 O -0.464 6.464 10 C -0.581 4.581 11 H 0.086 0.914 12 C -0.132 4.132 13 N -0.397 5.397 14 Si 0.732 3.268 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.201 1.201 18 C -0.080 4.080 19 H 0.111 0.889 20 C -0.201 4.201 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.132 0.868 25 H 0.180 0.820 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.213 0.787 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.390 1.091 15.108 16.078 hybrid contribution 0.953 -0.913 -0.917 1.607 sum -4.437 0.178 14.190 14.869 Atomic orbital electron populations 1.21943 0.92346 1.02519 1.02881 1.24310 0.98864 0.93824 1.00795 1.86131 1.81132 1.21266 1.07723 1.24858 1.05535 1.00388 0.94552 1.22118 1.01397 0.93096 0.97594 1.19649 0.87422 1.00240 0.87133 1.46226 1.07375 1.78130 1.10038 1.18266 0.89634 0.76858 0.79442 1.90603 1.53022 1.56636 1.46126 1.20912 0.93332 1.50474 0.93406 0.91389 1.25708 0.98382 0.93060 0.96044 1.70030 1.33816 1.35313 1.00543 0.86324 0.82932 0.78468 0.79086 1.18760 1.20160 1.20150 1.20748 0.99165 0.96650 0.91467 0.88909 1.21816 0.95639 0.99683 1.02980 0.91422 0.91766 0.91675 0.86807 0.82010 0.92609 0.92517 0.78694 0.92154 0.92291 0.90744 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.32 37.16 0.35 -0.94 16 2 C -0.05 -0.53 3.60 -25.79 -0.09 -0.63 16 3 S -0.20 -2.61 22.61 -107.50 -2.43 -5.04 16 4 C -0.12 -1.75 10.92 28.93 0.32 -1.43 16 5 C -0.13 -1.96 4.56 -101.67 -0.46 -2.42 16 6 C 0.18 3.49 5.88 -5.20 -0.03 3.45 16 7 N -0.76 -16.83 5.25 -62.91 -0.33 -17.16 16 8 C 0.55 15.68 7.75 -12.99 -0.10 15.58 16 9 O -0.58 -18.79 15.02 5.20 0.08 -18.71 16 10 C -0.54 -15.33 9.54 -35.63 -0.34 -15.67 16 11 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 12 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 13 N -0.77 -23.03 11.83 55.55 0.66 -22.38 16 14 Si 0.91 20.09 29.56 -169.99 -5.02 15.06 16 15 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 C -0.06 -0.76 2.60 -91.35 -0.24 -1.00 16 19 H 0.09 1.14 7.91 -51.93 -0.41 0.73 16 20 C -0.14 -1.77 8.78 37.16 0.33 -1.44 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.11 1.07 7.87 -51.93 -0.41 0.66 16 25 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 28 H 0.38 7.60 7.65 -40.82 -0.31 7.29 16 29 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.06 7.29 -51.93 -0.38 0.68 16 32 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 LS Contribution 285.85 15.07 4.31 4.31 Total: -1.00 -33.05 285.85 -7.55 -40.60 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.43 Total: 5.47 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.37 Total: -2.15 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.33 Total: -39.54 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: 0.08 Total: -18.71 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -2.43 Total: -5.04 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.05 -7.55 -40.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725585273.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.436 kcal (2) G-P(sol) polarization free energy of solvation -33.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds