Wall clock time and date at job start Mon Mar 30 2020 04:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.83553 * 111.22750 * 2 1 4 4 C 1.77561 * 96.35112 * 265.43199 * 3 2 1 5 5 C 1.31316 * 108.14220 * 345.21599 * 4 3 2 6 6 C 1.50695 * 120.76908 * 179.82723 * 5 4 3 7 7 N 1.46495 * 109.47516 * 94.97782 * 6 5 4 8 8 C 1.34773 * 120.00407 * 180.02562 * 7 6 5 9 9 O 1.21691 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.46372 * 120.00238 * 179.97438 * 8 7 6 11 11 H 1.08003 * 120.00209 * 0.02562 * 10 8 7 12 12 C 1.40052 * 120.00071 * 179.97438 * 10 8 7 13 13 N 1.30675 * 120.00151 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99996 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47136 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46995 * 120.00377 * 14 12 10 17 17 H 1.48501 * 109.47015 * 240.00188 * 14 12 10 18 18 C 1.49617 * 118.46536 * 359.80369 * 5 4 3 19 19 H 1.09002 * 109.46825 * 138.98655 * 18 5 4 20 20 C 1.52997 * 109.42544 * 258.94588 * 18 5 4 21 21 H 1.09001 * 109.47032 * 171.01181 * 1 2 3 22 22 H 1.08998 * 109.47618 * 291.01171 * 1 2 3 23 23 H 1.09001 * 109.46961 * 51.01391 * 1 2 3 24 24 H 1.08993 * 111.07330 * 124.52218 * 2 1 3 25 25 H 1.08004 * 125.92732 * 165.23954 * 4 3 2 26 26 H 1.09004 * 109.47366 * 214.97868 * 6 5 4 27 27 H 1.09006 * 109.47191 * 334.97098 * 6 5 4 28 28 H 0.97003 * 119.99728 * 0.02562 * 7 6 5 29 29 H 0.96993 * 120.00065 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.46847 * 179.33526 * 20 18 5 31 31 H 1.09000 * 109.47654 * 299.33449 * 20 18 5 32 32 H 1.09007 * 109.47142 * 59.33794 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1946 1.7110 0.0000 4 6 2.3967 1.8432 -1.7591 5 6 2.3149 0.6371 -2.2719 6 6 2.4445 0.4205 -3.7575 7 7 3.8319 0.0803 -4.0823 8 6 4.1859 -0.1577 -5.3608 9 8 3.3530 -0.0905 -6.2454 10 6 5.5723 -0.4971 -5.6853 11 1 6.3115 -0.5572 -4.9002 12 6 5.9400 -0.7450 -7.0137 13 7 5.0455 -0.6728 -7.9636 14 14 7.7094 -1.1774 -7.4279 15 1 8.5194 -1.1936 -6.1834 16 1 7.7552 -2.5179 -8.0653 17 1 8.2602 -0.1650 -8.3644 18 6 2.0905 -0.5173 -1.3469 19 1 1.3773 -1.2089 -1.7955 20 6 3.4170 -1.2397 -1.1035 21 1 -0.3633 -1.0151 -0.1606 22 1 -0.3634 0.3685 0.9593 23 1 -0.3633 0.6465 -0.7988 24 1 1.9219 -0.5764 0.8379 25 1 2.5592 2.7570 -2.3114 26 1 1.7892 -0.3946 -4.0645 27 1 2.1612 1.3322 -4.2837 28 1 4.4958 0.0264 -3.3771 29 1 5.3003 -0.8441 -8.8837 30 1 3.2565 -2.0738 -0.4204 31 1 3.8055 -1.6150 -2.0503 32 1 4.1342 -0.5449 -0.6664 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725585273.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:54 Heat of formation + Delta-G solvation = -57.311533 kcal Electronic energy + Delta-G solvation = -15092.213228 eV Core-core repulsion = 12563.707870 eV Total energy + Delta-G solvation = -2528.505358 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97206 -38.67596 -35.24497 -34.47062 -32.75035 -30.91615 -29.03323 -26.77616 -24.99921 -22.95326 -21.73506 -20.10577 -18.94496 -18.15973 -17.43829 -16.48623 -16.02478 -15.66337 -15.31097 -15.18928 -14.53005 -14.34092 -14.30789 -13.75663 -13.49707 -13.15470 -13.06181 -12.76357 -12.68804 -12.59738 -12.29286 -12.12118 -11.98263 -11.75243 -11.37937 -10.95542 -10.85736 -9.90766 -9.50912 -8.49256 -8.27243 -6.86752 0.61389 0.78685 1.31610 1.40225 1.40721 1.58630 2.25263 2.46057 3.24181 3.42083 3.57099 3.67106 3.87704 4.14569 4.33094 4.37167 4.49954 4.52751 4.68018 4.77948 4.86778 4.93679 4.96658 5.14476 5.25119 5.31171 5.32163 5.49121 5.85916 6.18017 6.24921 6.86036 7.51668 8.47104 8.66066 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.045265 B = 0.005202 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.426415 B = 5381.428585 C = 5510.397076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 S -0.200 6.200 4 C -0.120 4.120 5 C -0.139 4.139 6 C 0.188 3.812 7 N -0.746 5.746 8 C 0.538 3.462 9 O -0.633 6.633 10 C -0.572 4.572 11 H 0.086 0.914 12 C 0.030 3.970 13 N -0.822 5.822 14 Si 0.998 3.002 15 H -0.247 1.247 16 H -0.267 1.267 17 H -0.269 1.269 18 C -0.060 4.060 19 H 0.096 0.904 20 C -0.140 4.140 21 H 0.084 0.916 22 H 0.077 0.923 23 H 0.050 0.950 24 H 0.138 0.862 25 H 0.161 0.839 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.394 0.606 29 H 0.275 0.725 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 -0.450 17.054 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 S 0.040 5.960 4 C -0.252 4.252 5 C -0.150 4.150 6 C 0.061 3.939 7 N -0.401 5.401 8 C 0.342 3.658 9 O -0.520 6.520 10 C -0.608 4.608 11 H 0.105 0.895 12 C -0.185 4.185 13 N -0.452 5.452 14 Si 0.817 3.183 15 H -0.170 1.170 16 H -0.192 1.192 17 H -0.194 1.194 18 C -0.080 4.080 19 H 0.114 0.886 20 C -0.197 4.197 21 H 0.103 0.897 22 H 0.096 0.904 23 H 0.069 0.931 24 H 0.156 0.844 25 H 0.179 0.821 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.227 0.773 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.318 0.439 17.289 17.825 hybrid contribution 0.539 -0.664 -1.497 1.724 sum -3.779 -0.224 15.791 16.239 Atomic orbital electron populations 1.21954 0.91077 1.03383 1.03147 1.24441 0.99821 0.92072 1.00243 1.86147 1.81127 1.23239 1.05455 1.25004 1.03834 1.00156 0.96164 1.21901 1.03277 0.94515 0.95286 1.19580 0.85273 0.98752 0.90271 1.45862 1.09071 1.76561 1.08582 1.18643 0.89810 0.76682 0.80669 1.90556 1.54310 1.58949 1.48193 1.21443 0.93813 1.50860 0.94709 0.89540 1.26967 1.04067 0.92051 0.95465 1.70191 1.37122 1.36450 1.01394 0.84970 0.75607 0.78359 0.79347 1.17010 1.19234 1.19383 1.20755 0.99581 0.95656 0.91991 0.88623 1.21789 0.95272 1.00441 1.02244 0.89709 0.90375 0.93093 0.84427 0.82133 0.93912 0.94277 0.77257 0.91532 0.89626 0.93241 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.32 71.98 0.67 -1.49 16 2 C -0.04 -0.70 3.60 31.21 0.11 -0.59 16 3 S -0.20 -4.75 22.61 -56.49 -1.28 -6.02 16 4 C -0.12 -3.35 10.92 67.47 0.74 -2.62 16 5 C -0.14 -4.09 4.56 -17.14 -0.08 -4.17 16 6 C 0.19 7.42 5.88 85.63 0.50 7.93 16 7 N -0.75 -33.81 5.25 -471.15 -2.47 -36.28 16 8 C 0.54 31.43 7.75 86.36 0.67 32.10 16 9 O -0.63 -42.80 15.02 -4.32 -0.06 -42.86 16 10 C -0.57 -32.53 9.54 24.83 0.24 -32.30 16 11 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 12 C 0.03 1.65 5.50 85.31 0.47 2.12 16 13 N -0.82 -50.54 11.83 21.84 0.26 -50.28 16 14 Si 1.00 40.93 29.56 68.60 2.03 42.96 16 15 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 16 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 17 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 18 C -0.06 -1.41 2.60 -11.27 -0.03 -1.44 16 19 H 0.10 2.20 7.91 -2.39 -0.02 2.18 16 20 C -0.14 -3.18 8.78 71.98 0.63 -2.55 16 21 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.14 2.00 7.87 -2.39 -0.02 1.98 16 25 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 26 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.04 1.66 8.05 -2.38 -0.02 1.64 16 28 H 0.39 15.80 7.65 -92.71 -0.71 15.09 16 29 H 0.27 15.23 8.29 -92.71 -0.77 14.46 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.37 7.29 -2.39 -0.02 1.35 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -73.56 285.85 2.80 -70.76 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.41 Total: 24.74 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 3.92 Total: -3.01 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.22 Total: -86.56 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.06 Total: -42.86 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -1.28 Total: -6.02 kcal Total: -73.56 2.80 -70.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725585273.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.448 kcal (2) G-P(sol) polarization free energy of solvation -73.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds