Wall clock time and date at job start Mon Mar 30 2020 04:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81695 * 110.38751 * 2 1 4 4 C 1.76517 * 96.58619 * 241.18917 * 3 2 1 5 5 C 1.33378 * 110.06896 * 0.03550 * 4 3 2 6 6 C 1.41167 * 121.13615 * 180.02562 * 5 4 3 7 7 O 1.21836 * 119.99692 * 261.75753 * 6 5 4 8 8 N 1.34779 * 120.00011 * 81.75963 * 6 5 4 9 9 C 1.46500 * 119.99955 * 5.71138 * 8 6 5 10 10 C 1.36936 * 119.99484 * 185.70740 * 8 6 5 11 11 H 1.07994 * 120.00714 * 352.90527 * 10 8 6 12 12 C 1.38963 * 119.99615 * 172.90495 * 10 8 6 13 13 N 1.31432 * 119.99839 * 5.29990 * 12 10 8 14 14 Si 1.86797 * 120.00070 * 185.29812 * 12 10 8 15 15 H 1.48502 * 109.47138 * 60.00280 * 14 12 10 16 16 H 1.48502 * 109.46918 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47191 * 300.00193 * 14 12 10 18 18 C 1.48927 * 117.72924 * 0.02562 * 5 4 3 19 19 H 1.08999 * 109.13785 * 239.53373 * 18 5 4 20 20 C 1.52994 * 109.14086 * 120.36140 * 18 5 4 21 21 H 1.09004 * 109.46953 * 175.04226 * 1 2 3 22 22 H 1.09001 * 109.47149 * 295.04086 * 1 2 3 23 23 H 1.08997 * 109.47404 * 55.04311 * 1 2 3 24 24 H 1.09004 * 110.50584 * 122.43160 * 2 1 3 25 25 H 1.07995 * 124.96377 * 180.02562 * 4 3 2 26 26 H 1.09002 * 109.47259 * 4.29747 * 9 8 6 27 27 H 1.08992 * 109.47135 * 124.30110 * 9 8 6 28 28 H 1.09006 * 109.46477 * 244.30103 * 9 8 6 29 29 H 0.97003 * 120.00023 * 179.97438 * 13 12 10 30 30 H 1.09003 * 109.47372 * 56.22796 * 20 18 5 31 31 H 1.08997 * 109.47400 * 176.23390 * 20 18 5 32 32 H 1.09004 * 109.47162 * 296.23125 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1629 1.7031 0.0000 4 6 3.0255 1.5985 -1.5365 5 6 2.8799 0.3809 -2.0611 6 6 3.4776 0.0412 -3.2941 7 8 2.8202 0.0747 -4.3194 8 7 4.7753 -0.3204 -3.3370 9 6 5.5321 -0.4821 -2.0932 10 6 5.3861 -0.5365 -4.5434 11 1 4.8035 -0.5301 -5.4526 12 6 6.7559 -0.7641 -4.5976 13 7 7.4480 -0.8756 -3.4858 14 14 7.6135 -0.9116 -6.2505 15 1 7.4282 0.3460 -7.0183 16 1 9.0634 -1.1510 -6.0362 17 1 7.0310 -2.0462 -7.0109 18 6 2.0654 -0.6079 -1.3018 19 1 2.6842 -1.4730 -1.0636 20 6 0.8872 -1.0579 -2.1679 21 1 -0.3633 -1.0239 -0.0888 22 1 -0.3633 0.4350 0.9311 23 1 -0.3634 0.5888 -0.8422 24 1 1.9118 -0.5475 0.8617 25 1 3.5888 2.4029 -1.9860 26 1 4.8656 -0.3443 -1.2417 27 1 5.9642 -1.4821 -2.0582 28 1 6.3297 0.2599 -2.0541 29 1 8.4041 -1.0349 -3.5236 30 1 1.2608 -1.4566 -3.1111 31 1 0.3253 -1.8310 -1.6438 32 1 0.2358 -0.2066 -2.3660 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725586621.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:00 Heat of formation + Delta-G solvation = -19.402809 kcal Electronic energy + Delta-G solvation = -15750.803863 eV Core-core repulsion = 13223.942350 eV Total energy + Delta-G solvation = -2526.861513 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.17765 -38.40112 -36.70632 -34.06302 -33.07094 -29.91311 -28.43743 -26.92334 -26.25413 -24.31846 -21.39980 -19.73189 -18.99630 -18.39946 -17.60148 -16.92656 -16.30801 -15.87906 -15.66339 -15.20767 -14.55508 -14.30947 -14.16231 -13.68274 -13.50776 -12.98208 -12.81403 -12.75632 -12.61871 -12.51545 -12.37591 -12.28890 -12.15499 -11.84820 -11.40961 -11.07670 -11.06999 -10.42737 -9.95662 -8.40009 -8.31779 -5.97698 0.54633 0.70340 1.16053 1.36946 1.39240 1.50010 1.91181 2.24142 3.04532 3.15788 3.53087 3.75727 3.79482 4.17686 4.35607 4.40261 4.51439 4.56188 4.67318 4.77276 4.87862 4.99399 5.10692 5.15136 5.19680 5.31430 5.38390 5.42303 5.46020 5.97021 6.40248 7.08178 7.38501 7.92248 8.60128 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043457 B = 0.006887 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.161289 B = 4064.853440 C = 4315.898214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 S -0.138 6.138 4 C -0.121 4.121 5 C -0.147 4.147 6 C 0.479 3.521 7 O -0.635 6.635 8 N -0.450 5.450 9 C 0.134 3.866 10 C -0.347 4.347 11 H 0.079 0.921 12 C -0.002 4.002 13 N -0.894 5.894 14 Si 0.996 3.004 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.270 1.270 18 C -0.052 4.052 19 H 0.094 0.906 20 C -0.131 4.131 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.133 0.867 25 H 0.151 0.849 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.274 0.726 30 H 0.028 0.972 31 H 0.096 0.904 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.998 -0.040 10.131 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.181 4.181 3 S 0.104 5.896 4 C -0.253 4.253 5 C -0.162 4.162 6 C 0.267 3.733 7 O -0.525 6.525 8 N -0.166 5.166 9 C -0.009 4.009 10 C -0.474 4.474 11 H 0.097 0.903 12 C -0.204 4.204 13 N -0.533 5.533 14 Si 0.819 3.181 15 H -0.199 1.199 16 H -0.190 1.190 17 H -0.195 1.195 18 C -0.072 4.072 19 H 0.112 0.888 20 C -0.189 4.189 21 H 0.111 0.889 22 H 0.096 0.904 23 H 0.078 0.922 24 H 0.151 0.849 25 H 0.169 0.831 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.207 0.906 10.644 13.471 hybrid contribution 1.134 -0.858 -2.069 2.510 sum -7.072 0.048 8.575 11.116 Atomic orbital electron populations 1.22054 0.89983 1.04089 1.03192 1.23875 1.01318 0.92937 0.99958 1.85429 1.61333 1.20372 1.22482 1.25328 1.02425 0.99009 0.98572 1.20168 1.02607 0.96796 0.96677 1.16759 0.82557 0.84702 0.89251 1.90641 1.63445 1.61114 1.37334 1.44030 1.08870 1.56336 1.07403 1.21573 0.93756 1.02517 0.83020 1.19754 0.92068 1.49199 0.86420 0.90302 1.26135 0.96261 0.95215 1.02758 1.70263 1.08751 1.46980 1.27305 0.84963 0.77304 0.78887 0.76988 1.19909 1.18983 1.19535 1.20197 0.96620 0.97303 0.93067 0.88842 1.21872 0.96590 1.01944 0.98475 0.88891 0.90432 0.92226 0.84949 0.83133 0.92975 0.92404 0.92844 0.91537 0.95239 0.88546 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.06 71.98 0.58 -1.82 16 2 C -0.05 -1.21 3.92 30.70 0.12 -1.09 16 3 S -0.14 -3.85 22.61 -56.49 -1.28 -5.13 16 4 C -0.12 -4.40 10.66 66.72 0.71 -3.69 16 5 C -0.15 -5.89 2.81 -20.79 -0.06 -5.95 16 6 C 0.48 24.65 6.32 84.96 0.54 25.19 16 7 O -0.64 -37.56 15.87 -4.78 -0.08 -37.64 16 8 N -0.45 -24.20 3.02 -669.43 -2.02 -26.23 16 9 C 0.13 6.32 8.72 127.77 1.11 7.44 16 10 C -0.35 -20.13 9.55 84.07 0.80 -19.33 16 11 H 0.08 4.88 7.18 -2.91 -0.02 4.86 16 12 C 0.00 -0.12 5.46 84.93 0.46 0.34 16 13 N -0.89 -46.83 9.45 21.67 0.20 -46.62 16 14 Si 1.00 42.63 29.56 68.60 2.03 44.66 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 16 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 C -0.05 -1.60 3.10 -11.98 -0.04 -1.64 16 19 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 20 C -0.13 -3.93 7.74 71.98 0.56 -3.37 16 21 H 0.09 1.30 6.73 -2.39 -0.02 1.29 16 22 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.23 6.68 -2.39 -0.02 1.22 16 24 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 25 H 0.15 5.60 8.06 -2.91 -0.02 5.58 16 26 H 0.05 2.10 6.17 -2.39 -0.01 2.09 16 27 H 0.06 2.85 7.06 -2.39 -0.02 2.83 16 28 H 0.05 2.64 7.04 -2.38 -0.02 2.63 16 29 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.03 1.11 7.08 -2.39 -0.02 1.09 16 31 H 0.10 2.07 6.85 -2.39 -0.02 2.05 16 32 H 0.06 1.84 6.51 -2.38 -0.02 1.82 16 Total: -1.00 -66.78 270.24 4.77 -62.02 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.12 Total: 12.86 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 4.79 Total: -3.92 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -1.82 Total: -72.85 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.08 Total: -37.64 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.28 Total: -5.13 kcal Total: -66.78 4.77 -62.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725586621.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.616 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds