Wall clock time and date at job start Mon Mar 30 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81902 * 110.45525 * 2 1 4 4 C 1.76518 * 96.60305 * 118.72356 * 3 2 1 5 5 C 1.33382 * 110.06817 * 0.02562 * 4 3 2 6 6 C 1.41164 * 121.13478 * 179.97438 * 5 4 3 7 7 O 1.21841 * 119.99778 * 98.86620 * 6 5 4 8 8 N 1.34780 * 120.00435 * 278.86502 * 6 5 4 9 9 C 1.46502 * 119.99783 * 5.12632 * 8 6 5 10 10 C 1.36936 * 119.99902 * 185.12610 * 8 6 5 11 11 H 1.07998 * 120.00377 * 8.72747 * 10 8 6 12 12 C 1.38956 * 119.99707 * 188.72885 * 10 8 6 13 13 N 1.31435 * 120.00019 * 354.26070 * 12 10 8 14 14 Si 1.86802 * 120.00160 * 174.25730 * 12 10 8 15 15 H 1.48503 * 109.46609 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46853 * 119.99660 * 14 12 10 17 17 H 1.48494 * 109.47225 * 240.00069 * 14 12 10 18 18 C 1.48931 * 117.73026 * 0.27768 * 5 4 3 19 19 H 1.08992 * 109.13614 * 120.18627 * 18 5 4 20 20 C 1.52999 * 109.13665 * 239.25916 * 18 5 4 21 21 H 1.09003 * 109.46795 * 61.45598 * 1 2 3 22 22 H 1.08997 * 109.47121 * 181.45099 * 1 2 3 23 23 H 1.09000 * 109.46980 * 301.45395 * 1 2 3 24 24 H 1.09004 * 110.40543 * 237.54562 * 2 1 3 25 25 H 1.07991 * 124.96476 * 179.97438 * 4 3 2 26 26 H 1.08997 * 109.47152 * 234.71758 * 9 8 6 27 27 H 1.08999 * 109.47042 * 114.71570 * 9 8 6 28 28 H 1.09003 * 109.46937 * 354.71638 * 9 8 6 29 29 H 0.97005 * 120.00005 * 179.97438 * 13 12 10 30 30 H 1.09002 * 109.46964 * 60.19022 * 20 18 5 31 31 H 1.08998 * 109.47100 * 180.19704 * 20 18 5 32 32 H 1.09000 * 109.46918 * 300.19772 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1657 1.7043 0.0000 4 6 3.0262 1.6000 1.5377 5 6 2.8797 0.3825 2.0625 6 6 3.4755 0.0430 3.2963 7 8 2.8138 0.0659 4.3191 8 7 4.7764 -0.3065 3.3431 9 6 5.6003 -0.2262 2.1343 10 6 5.3279 -0.7366 4.5203 11 1 4.6954 -0.9308 5.3739 12 6 6.7015 -0.9233 4.6167 13 7 7.4584 -0.7966 3.5497 14 14 7.4724 -1.3541 6.2628 15 1 6.4119 -1.4382 7.2990 16 1 8.1655 -2.6632 6.1573 17 1 8.4522 -0.3042 6.6405 18 6 2.0718 -0.6086 1.2989 19 1 2.6952 -1.4704 1.0610 20 6 0.8944 -1.0672 2.1617 21 1 -0.3633 0.4911 -0.9028 22 1 -0.3633 -1.0273 0.0260 23 1 -0.3633 0.5363 0.8767 24 1 1.9100 -0.5482 -0.8621 25 1 3.5896 2.4041 1.9874 26 1 6.0680 -1.1930 1.9485 27 1 6.3725 0.5309 2.2707 28 1 4.9732 0.0434 1.2845 29 1 8.4174 -0.9265 3.6171 30 1 0.2725 -0.2083 2.4139 31 1 0.3011 -1.7958 1.6091 32 1 1.2709 -1.5243 3.0768 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725586627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:03 Heat of formation + Delta-G solvation = -1.547123 kcal Electronic energy + Delta-G solvation = -15748.368860 eV Core-core repulsion = 13222.281628 eV Total energy + Delta-G solvation = -2526.087232 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.43795 -36.90551 -34.67413 -32.49006 -31.26619 -28.75392 -26.43765 -25.32246 -24.83514 -22.59639 -20.06033 -18.10230 -17.11149 -16.82134 -15.83650 -15.55110 -14.57852 -14.08870 -13.99721 -13.86916 -13.09400 -12.94332 -12.68299 -11.96021 -11.78460 -11.54214 -11.33567 -11.20693 -11.17301 -11.01869 -10.93185 -10.67725 -10.38756 -10.34413 -9.88155 -9.85024 -9.07574 -8.47076 -7.90298 -7.12042 -6.31046 -3.86397 1.93022 2.05877 2.50089 3.10663 3.22108 3.29784 3.74917 4.09947 4.65257 4.81791 4.92961 5.11450 5.25748 5.33617 5.51274 5.62202 5.69192 5.78029 5.93327 6.06030 6.13573 6.24527 6.37068 6.50969 6.63127 6.69875 7.08898 7.38233 7.51001 8.01906 8.43371 9.12775 9.37936 9.91509 10.63130 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043262 B = 0.006924 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.056865 B = 4042.915042 C = 4336.579599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 S -0.170 6.170 4 C -0.124 4.124 5 C -0.118 4.118 6 C 0.478 3.522 7 O -0.591 6.591 8 N -0.434 5.434 9 C 0.114 3.886 10 C -0.300 4.300 11 H 0.106 0.894 12 C 0.027 3.973 13 N -0.883 5.883 14 Si 0.931 3.069 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.280 1.280 18 C -0.052 4.052 19 H 0.094 0.906 20 C -0.137 4.137 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.105 0.895 25 H 0.160 0.840 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.025 0.975 29 H 0.266 0.734 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 0.260 -8.316 11.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.187 4.187 3 S 0.071 5.929 4 C -0.255 4.255 5 C -0.133 4.133 6 C 0.265 3.735 7 O -0.478 6.478 8 N -0.151 5.151 9 C -0.030 4.030 10 C -0.428 4.428 11 H 0.123 0.877 12 C -0.175 4.175 13 N -0.524 5.524 14 Si 0.758 3.242 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.205 1.205 18 C -0.072 4.072 19 H 0.112 0.888 20 C -0.194 4.194 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.123 0.877 25 H 0.178 0.822 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.778 1.216 -8.770 11.785 hybrid contribution 1.003 -1.072 1.531 2.121 sum -6.775 0.144 -7.238 9.916 Atomic orbital electron populations 1.22027 0.92107 1.02513 1.02823 1.23704 0.99577 0.94431 1.00943 1.85550 1.62600 1.18897 1.25860 1.25190 1.03422 0.99941 0.96984 1.20260 1.00529 0.94938 0.97524 1.16054 0.83250 0.86274 0.87963 1.90696 1.62861 1.59288 1.34959 1.43815 1.07493 1.53879 1.09928 1.21804 0.93126 1.03869 0.84170 1.19858 0.91107 1.41050 0.90802 0.87670 1.25384 0.96172 0.96844 0.99086 1.70201 1.05893 1.48793 1.27506 0.85773 0.79052 0.77932 0.81468 1.19134 1.20662 1.20537 1.20149 0.96966 0.98081 0.92030 0.88844 1.21891 0.96539 1.01166 0.99818 0.92278 0.91147 0.91019 0.87711 0.82241 0.91207 0.91266 0.95634 0.92293 0.91926 0.92363 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.08 37.16 0.30 -1.19 16 2 C -0.06 -0.77 3.91 -26.56 -0.10 -0.87 16 3 S -0.17 -2.59 22.62 -107.50 -2.43 -5.02 16 4 C -0.12 -2.26 10.03 29.04 0.29 -1.97 16 5 C -0.12 -2.35 3.15 -106.05 -0.33 -2.69 16 6 C 0.48 11.85 6.34 -15.15 -0.10 11.76 16 7 O -0.59 -16.60 15.98 5.06 0.08 -16.52 16 8 N -0.43 -11.29 3.02 -125.60 -0.38 -11.67 16 9 C 0.11 2.65 8.68 59.85 0.52 3.17 16 10 C -0.30 -8.37 9.52 -15.01 -0.14 -8.52 16 11 H 0.11 3.07 7.22 -52.49 -0.38 2.69 16 12 C 0.03 0.72 5.46 -17.46 -0.10 0.63 16 13 N -0.88 -23.12 9.47 55.50 0.53 -22.60 16 14 Si 0.93 20.69 29.56 -169.99 -5.02 15.66 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 C -0.05 -0.85 3.12 -92.44 -0.29 -1.14 16 19 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 20 C -0.14 -2.12 7.64 37.16 0.28 -1.84 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.07 0.66 6.84 -51.93 -0.36 0.30 16 23 H 0.07 0.86 6.57 -51.93 -0.34 0.52 16 24 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.16 2.89 8.06 -52.49 -0.42 2.47 16 26 H 0.07 1.70 7.09 -51.93 -0.37 1.33 16 27 H 0.07 1.70 7.02 -51.93 -0.36 1.34 16 28 H 0.03 0.52 5.74 -51.93 -0.30 0.22 16 29 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.06 0.98 6.64 -51.93 -0.34 0.63 16 31 H 0.06 0.71 6.73 -51.93 -0.35 0.36 16 32 H 0.07 1.28 7.28 -51.93 -0.38 0.90 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -29.86 269.82 -6.83 -36.70 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.00 Total: 2.05 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 0.34 Total: -2.67 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.15 Total: -34.27 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.08 Total: -16.52 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.43 Total: -5.02 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.86 -6.83 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725586627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.149 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds