Wall clock time and date at job start Mon Mar 30 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81902 * 110.45525 * 2 1 4 4 C 1.76518 * 96.60305 * 118.72356 * 3 2 1 5 5 C 1.33382 * 110.06817 * 0.02562 * 4 3 2 6 6 C 1.41164 * 121.13478 * 179.97438 * 5 4 3 7 7 O 1.21841 * 119.99778 * 98.86620 * 6 5 4 8 8 N 1.34780 * 120.00435 * 278.86502 * 6 5 4 9 9 C 1.46502 * 119.99783 * 5.12632 * 8 6 5 10 10 C 1.36936 * 119.99902 * 185.12610 * 8 6 5 11 11 H 1.07998 * 120.00377 * 8.72747 * 10 8 6 12 12 C 1.38956 * 119.99707 * 188.72885 * 10 8 6 13 13 N 1.31435 * 120.00019 * 354.26070 * 12 10 8 14 14 Si 1.86802 * 120.00160 * 174.25730 * 12 10 8 15 15 H 1.48503 * 109.46609 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46853 * 119.99660 * 14 12 10 17 17 H 1.48494 * 109.47225 * 240.00069 * 14 12 10 18 18 C 1.48931 * 117.73026 * 0.27768 * 5 4 3 19 19 H 1.08992 * 109.13614 * 120.18627 * 18 5 4 20 20 C 1.52999 * 109.13665 * 239.25916 * 18 5 4 21 21 H 1.09003 * 109.46795 * 61.45598 * 1 2 3 22 22 H 1.08997 * 109.47121 * 181.45099 * 1 2 3 23 23 H 1.09000 * 109.46980 * 301.45395 * 1 2 3 24 24 H 1.09004 * 110.40543 * 237.54562 * 2 1 3 25 25 H 1.07991 * 124.96476 * 179.97438 * 4 3 2 26 26 H 1.08997 * 109.47152 * 234.71758 * 9 8 6 27 27 H 1.08999 * 109.47042 * 114.71570 * 9 8 6 28 28 H 1.09003 * 109.46937 * 354.71638 * 9 8 6 29 29 H 0.97005 * 120.00005 * 179.97438 * 13 12 10 30 30 H 1.09002 * 109.46964 * 60.19022 * 20 18 5 31 31 H 1.08998 * 109.47100 * 180.19704 * 20 18 5 32 32 H 1.09000 * 109.46918 * 300.19772 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1657 1.7043 0.0000 4 6 3.0262 1.6000 1.5377 5 6 2.8797 0.3825 2.0625 6 6 3.4755 0.0430 3.2963 7 8 2.8138 0.0659 4.3191 8 7 4.7764 -0.3065 3.3431 9 6 5.6003 -0.2262 2.1343 10 6 5.3279 -0.7366 4.5203 11 1 4.6954 -0.9308 5.3739 12 6 6.7015 -0.9233 4.6167 13 7 7.4584 -0.7966 3.5497 14 14 7.4724 -1.3541 6.2628 15 1 6.4119 -1.4382 7.2990 16 1 8.1655 -2.6632 6.1573 17 1 8.4522 -0.3042 6.6405 18 6 2.0718 -0.6086 1.2989 19 1 2.6952 -1.4704 1.0610 20 6 0.8944 -1.0672 2.1617 21 1 -0.3633 0.4911 -0.9028 22 1 -0.3633 -1.0273 0.0260 23 1 -0.3633 0.5363 0.8767 24 1 1.9100 -0.5482 -0.8621 25 1 3.5896 2.4041 1.9874 26 1 6.0680 -1.1930 1.9485 27 1 6.3725 0.5309 2.2707 28 1 4.9732 0.0434 1.2845 29 1 8.4174 -0.9265 3.6171 30 1 0.2725 -0.2083 2.4139 31 1 0.3011 -1.7958 1.6091 32 1 1.2709 -1.5243 3.0768 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725586627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:03 Heat of formation + Delta-G solvation = -19.433466 kcal Electronic energy + Delta-G solvation = -15749.144470 eV Core-core repulsion = 13222.281628 eV Total energy + Delta-G solvation = -2526.862842 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.17734 -38.40044 -36.70157 -34.09511 -33.06188 -29.91790 -28.41341 -26.92514 -26.27330 -24.29436 -21.43057 -19.72563 -18.99284 -18.37466 -17.60590 -16.95951 -16.30670 -15.86633 -15.66295 -15.21147 -14.58767 -14.29605 -14.16188 -13.67112 -13.50806 -12.96491 -12.82785 -12.77944 -12.64792 -12.51371 -12.39162 -12.29134 -12.14844 -11.84440 -11.36713 -11.08993 -11.06794 -10.42630 -9.95243 -8.40041 -8.32561 -5.98246 0.54068 0.70211 1.15872 1.34054 1.38961 1.53263 1.89745 2.24131 3.04256 3.14926 3.53032 3.76177 3.79397 4.18314 4.34397 4.41026 4.51825 4.56286 4.67157 4.76928 4.87104 4.99081 5.10443 5.15169 5.18781 5.30607 5.38260 5.42366 5.45847 5.97131 6.39996 7.08233 7.38208 7.92145 8.59934 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043262 B = 0.006924 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.056865 B = 4042.915042 C = 4336.579599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 S -0.139 6.139 4 C -0.121 4.121 5 C -0.147 4.147 6 C 0.478 3.522 7 O -0.635 6.635 8 N -0.450 5.450 9 C 0.132 3.868 10 C -0.343 4.343 11 H 0.078 0.922 12 C -0.003 4.003 13 N -0.893 5.893 14 Si 0.995 3.005 15 H -0.275 1.275 16 H -0.266 1.266 17 H -0.269 1.269 18 C -0.051 4.051 19 H 0.092 0.908 20 C -0.130 4.130 21 H 0.077 0.923 22 H 0.093 0.907 23 H 0.059 0.941 24 H 0.132 0.868 25 H 0.153 0.847 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.274 0.726 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 0.031 -10.197 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.179 4.179 3 S 0.103 5.897 4 C -0.253 4.253 5 C -0.163 4.163 6 C 0.267 3.733 7 O -0.525 6.525 8 N -0.167 5.167 9 C -0.011 4.011 10 C -0.471 4.471 11 H 0.096 0.904 12 C -0.204 4.204 13 N -0.533 5.533 14 Si 0.818 3.182 15 H -0.200 1.200 16 H -0.191 1.191 17 H -0.195 1.195 18 C -0.071 4.071 19 H 0.110 0.890 20 C -0.187 4.187 21 H 0.095 0.905 22 H 0.111 0.889 23 H 0.078 0.922 24 H 0.150 0.850 25 H 0.170 0.830 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.221 0.995 -10.700 13.530 hybrid contribution 1.125 -0.950 2.069 2.539 sum -7.096 0.045 -8.631 11.173 Atomic orbital electron populations 1.22049 0.89964 1.04099 1.03202 1.23891 1.01264 0.92869 0.99918 1.85462 1.61383 1.20451 1.22411 1.25364 1.02411 0.98976 0.98565 1.20173 1.02641 0.96789 0.96663 1.16775 0.82689 0.84577 0.89249 1.90645 1.63745 1.60794 1.37291 1.44037 1.08320 1.54160 1.10153 1.21599 0.92830 1.02522 0.84167 1.19797 0.91922 1.44074 0.91327 0.90375 1.26144 0.95821 0.95920 1.02541 1.70277 1.06392 1.47873 1.28737 0.84848 0.77878 0.78430 0.77017 1.19984 1.19074 1.19450 1.20167 0.96634 0.97216 0.93105 0.88955 1.21862 0.96616 1.01704 0.98556 0.90454 0.88866 0.92186 0.84998 0.82960 0.92512 0.92845 0.92833 0.91564 0.92267 0.88425 0.95296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.08 71.98 0.58 -1.82 16 2 C -0.05 -1.18 3.91 30.71 0.12 -1.06 16 3 S -0.14 -3.85 22.62 -56.49 -1.28 -5.13 16 4 C -0.12 -4.35 10.03 66.72 0.67 -3.68 16 5 C -0.15 -5.89 3.15 -20.79 -0.07 -5.95 16 6 C 0.48 24.64 6.34 84.96 0.54 25.18 16 7 O -0.63 -37.58 15.98 -4.80 -0.08 -37.66 16 8 N -0.45 -24.23 3.02 -669.43 -2.02 -26.25 16 9 C 0.13 6.22 8.68 127.77 1.11 7.33 16 10 C -0.34 -19.94 9.52 84.07 0.80 -19.14 16 11 H 0.08 4.85 7.22 -2.91 -0.02 4.83 16 12 C 0.00 -0.15 5.46 84.92 0.46 0.31 16 13 N -0.89 -46.89 9.47 21.67 0.21 -46.68 16 14 Si 1.00 42.69 29.56 68.60 2.03 44.72 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 C -0.05 -1.59 3.12 -11.97 -0.04 -1.63 16 19 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 20 C -0.13 -3.91 7.64 71.98 0.55 -3.36 16 21 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.09 1.29 6.84 -2.39 -0.02 1.27 16 23 H 0.06 1.24 6.57 -2.39 -0.02 1.23 16 24 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.15 5.56 8.06 -2.92 -0.02 5.54 16 26 H 0.06 2.79 7.09 -2.39 -0.02 2.78 16 27 H 0.05 2.66 7.02 -2.39 -0.02 2.64 16 28 H 0.05 2.18 5.74 -2.39 -0.01 2.16 16 29 H 0.27 13.36 8.31 -92.70 -0.77 12.59 16 30 H 0.06 1.80 6.64 -2.39 -0.02 1.79 16 31 H 0.10 2.10 6.73 -2.39 -0.02 2.08 16 32 H 0.03 1.08 7.28 -2.39 -0.02 1.07 16 Total: -1.00 -66.95 269.82 4.70 -62.25 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.12 Total: 12.57 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 4.73 Total: -3.82 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.82 Total: -72.93 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.08 Total: -37.66 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.28 Total: -5.13 kcal Total: -66.95 4.70 -62.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725586627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.812 kcal (2) G-P(sol) polarization free energy of solvation -66.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds