Wall clock time and date at job start Mon Mar 30 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00199 * 2 1 4 4 H 1.48489 * 109.47324 * 270.00193 * 3 2 1 5 5 H 1.48503 * 109.46767 * 30.00386 * 3 2 1 6 6 H 1.48501 * 109.47133 * 149.99884 * 3 2 1 7 7 C 1.37880 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00173 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99807 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.48784 * 300.02880 * 9 7 2 11 11 C 1.53091 * 109.48010 * 179.97438 * 9 7 2 12 12 C 1.53176 * 109.21206 * 182.43847 * 11 9 7 13 13 C 1.53174 * 109.03724 * 56.94941 * 12 11 9 14 14 C 1.53084 * 109.16456 * 303.01556 * 13 12 11 15 15 H 1.08997 * 109.48095 * 297.62758 * 14 13 12 16 16 C 1.50703 * 109.48277 * 177.60348 * 14 13 12 17 17 C 1.31735 * 126.52246 * 114.71297 * 16 14 13 18 18 C 1.49578 * 116.78396 * 180.02562 * 17 16 14 19 19 N 1.48303 * 110.75725 * 340.81433 * 18 17 16 20 20 S 1.77526 * 126.52449 * 295.02637 * 16 14 13 21 21 O 1.42906 * 109.41372 * 57.61236 * 14 13 12 22 22 H 0.97006 * 120.00117 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.52401 * 62.50000 * 11 9 7 24 24 H 1.09004 * 109.52068 * 302.37645 * 11 9 7 25 25 H 1.09004 * 109.53956 * 176.81728 * 12 11 9 26 26 H 1.08995 * 109.54545 * 297.07504 * 12 11 9 27 27 H 1.09007 * 109.52410 * 62.92341 * 13 12 11 28 28 H 1.09000 * 109.52423 * 183.04692 * 13 12 11 29 29 H 1.08003 * 121.60912 * 0.24688 * 17 16 14 30 30 H 1.09000 * 109.38955 * 220.34541 * 18 17 16 31 31 H 1.09004 * 108.95471 * 101.00376 * 18 17 16 32 32 H 1.00903 * 111.00246 * 269.10259 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8754 -0.6793 -0.8891 11 6 4.0220 -2.6374 -0.0001 12 6 5.5524 -2.6308 0.0621 13 6 5.9986 -1.8565 1.3061 14 6 5.4132 -0.4429 1.2550 15 1 5.8030 0.0806 0.3821 16 6 5.7991 0.3064 2.5043 17 6 6.5780 1.3665 2.5736 18 6 6.8179 1.9390 3.9345 19 7 5.7771 1.4828 4.8875 20 16 5.2969 -0.0762 4.1635 21 8 3.9890 -0.5215 1.1671 22 1 -0.4850 0.8401 0.0004 23 1 3.6966 -3.1389 -0.9116 24 1 3.6244 -3.1645 0.8673 25 1 5.9195 -3.6556 0.1192 26 1 5.9515 -2.1485 -0.8302 27 1 5.6410 -2.3668 2.2005 28 1 7.0869 -1.8003 1.3294 29 1 7.0192 1.8035 1.6899 30 1 6.8005 3.0273 3.8775 31 1 7.7963 1.6136 4.2881 32 1 5.0002 2.1262 4.9098 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725628932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:31 Heat of formation + Delta-G solvation = -16.916931 kcal Electronic energy + Delta-G solvation = -15734.942082 eV Core-core repulsion = 13208.188365 eV Total energy + Delta-G solvation = -2526.753717 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.77208 -36.91406 -33.23524 -32.82998 -31.92059 -29.63088 -26.39201 -25.18453 -23.07235 -21.59832 -20.09880 -19.28909 -17.38455 -16.77026 -16.13718 -15.34256 -15.07894 -14.53494 -14.17679 -13.92877 -13.51608 -13.28229 -12.77363 -12.49056 -12.26384 -12.05840 -11.21441 -11.09820 -10.77139 -10.61810 -10.48017 -10.22373 -10.03607 -9.99410 -9.74283 -9.63615 -9.08607 -8.60076 -8.17738 -7.27722 -6.14411 -4.22047 1.66500 1.89798 2.19444 3.33673 3.41048 3.61814 4.33575 4.49193 4.52340 4.94791 5.18890 5.26178 5.31205 5.36645 5.40545 5.55157 5.63020 5.78621 5.82693 6.00597 6.15432 6.21676 6.37459 6.42282 6.46657 6.53428 6.62321 6.70825 7.16320 7.59824 8.37473 8.46972 8.88972 9.49579 10.95841 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.010325 C = 0.008208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.986558 B = 2711.198193 C = 3410.390182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.085 3.915 3 Si 0.873 3.127 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.226 1.226 7 C -0.513 4.513 8 H 0.081 0.919 9 C 0.184 3.816 10 H 0.013 0.987 11 C -0.135 4.135 12 C -0.122 4.122 13 C -0.139 4.139 14 C 0.146 3.854 15 H 0.059 0.941 16 C -0.086 4.086 17 C -0.228 4.228 18 C 0.058 3.942 19 N -0.589 5.589 20 S 0.039 5.961 21 O -0.363 6.363 22 H 0.266 0.734 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.143 0.857 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.562 2.136 4.145 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.120 4.120 3 Si 0.699 3.301 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.149 1.149 7 C -0.550 4.550 8 H 0.099 0.901 9 C 0.129 3.871 10 H 0.030 0.970 11 C -0.173 4.173 12 C -0.159 4.159 13 C -0.177 4.177 14 C 0.085 3.915 15 H 0.077 0.923 16 C -0.200 4.200 17 C -0.260 4.260 18 C -0.072 4.072 19 N -0.307 5.307 20 S 0.168 5.832 21 O -0.284 6.284 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.160 0.840 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.231 1.293 5.635 15.360 hybrid contribution 0.435 2.164 -1.675 2.770 sum 14.666 3.457 3.960 15.579 Atomic orbital electron populations 1.69925 1.06670 1.27487 1.48433 1.25049 0.94647 0.99842 0.92452 0.87009 0.82861 0.82267 0.77914 1.21417 1.21951 1.14913 1.20923 0.87247 0.94905 1.51892 0.90098 1.20220 0.95098 0.87845 0.83938 0.96976 1.22075 0.92994 1.00123 1.02095 1.21646 0.97848 0.99419 0.97001 1.22118 0.99807 0.96069 0.99688 1.20190 0.87406 0.93238 0.90621 0.92318 1.24525 0.98987 0.97830 0.98679 1.23539 1.03793 0.99290 0.99364 1.21684 0.97062 1.00971 0.87493 1.67094 1.14683 1.07026 1.41927 1.86924 1.81193 1.16275 0.98792 1.88546 1.14500 1.77724 1.47614 0.92469 0.91737 0.91705 0.92276 0.92489 0.91035 0.91948 0.83989 0.89312 0.87683 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 2 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 3 Si 0.87 21.94 26.99 -169.99 -4.59 17.35 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.23 -5.47 5.17 56.52 0.29 -5.18 16 7 C -0.51 -14.56 9.38 -34.44 -0.32 -14.88 16 8 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 9 C 0.18 4.36 1.99 -27.84 -0.06 4.30 16 10 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 11 C -0.14 -2.68 5.35 -26.59 -0.14 -2.82 16 12 C -0.12 -1.95 6.03 -26.55 -0.16 -2.11 16 13 C -0.14 -2.25 5.40 -26.60 -0.14 -2.39 16 14 C 0.15 2.71 2.96 -27.84 -0.08 2.63 16 15 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 16 C -0.09 -1.47 5.53 -36.19 -0.20 -1.67 16 17 C -0.23 -3.20 10.30 -36.73 -0.38 -3.58 16 18 C 0.06 0.69 7.04 -4.74 -0.03 0.66 16 19 N -0.59 -8.16 8.34 -11.00 -0.09 -8.25 16 20 S 0.04 0.67 23.85 -107.50 -2.56 -1.89 16 21 O -0.36 -8.43 6.93 -35.23 -0.24 -8.67 16 22 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.35 4.52 9.00 -36.94 -0.33 4.19 16 LS Contribution 273.07 15.07 4.12 4.12 Total: -1.00 -31.12 273.07 -8.83 -39.96 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.62 Total: 1.37 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.62 Total: -17.47 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.68 Total: -34.75 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.24 Total: -8.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.59 Total: 17.35 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.56 Total: -1.89 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.12 -8.83 -39.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725628932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.039 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds